Entry: PS51485

Forthcoming changes to the profile format
General information about the entry

Entry name [info] PHYTOCYANIN
Accession [info] PS51485
Entry type [info] MATRIX
Date [info] APR-2010 (CREATED); OCT-2013 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51485
Associated ProRule [info] PRU00818

Name and characterization of the entry

Description [info] Phytocyanin domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=102;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=97;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.3764598; R2=0.0071132; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=16488.13964; R2=23.84234; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=1213; N_SCORE=12.0; H_SCORE=30317; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=440; N_SCORE=6.5; H_SCORE=26955; MODE=1; TEXT='?';
/DEFAULT: M0=-66; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='T'; M=  35,-182, -47,   9,  -8,-180, -62, -47,  34, -75, -24,-169, -61, -53,   9, -32,  50,   0,-186,   2;
/M: SY='N'; M=-171,-186,  30,  22,-183, -56, -10, -24,   3, -72,-172,  34, -60,  29, -12, -10,  33,  30,-196, -44;
/M: SY='Y'; M=-183,-191, -66,-182,  53,-191,  89,  -7,-180, -17, -40,-177,-192,-176,-177,-179, -77, -47,  18, 100;
/M: SY='T'; M= -33,-184, -27, -16,-174,-186, -11,  17,  22, -31, -72, -20, -24, -10,  -8, -91,  57,  34, -53,   1;
/M: SY='V'; M= -18,-179,-193, -75,-168, -71, -41, -20,-186, -51, -30,-189,-190,-187,-188,-177,-165, 100,-198,-174;
/M: SY='G'; M=-163,-189, -91,-112,-195, 103,-182,-202, -95,-198,-187, -44, -88, -76, -62,-162, -68,-196,-187,-190;
/I:         I=-23; MD=-58;
/M: SY='D'; M= -13,-192,  77, -51,-198,  72,-177,-200, -41,-198,-191, -49,-182,-173, -43, -94, -68,-194,-198,-188; D=-23;
/I:         I=-23; MI=0; MD=-58; IM=0; DM=-58;
/M: SY='S'; M=  -2,-187,   0,  10,-189,   9,  -8,-185, -10, -31,-180,  27, -15, -50,  -9,  44,   5, -51,-197, -78; D=-23;
/I:         I=-23; DM=-58;
/M: SY='D'; M=  -3, -71,  25, -43, -62,   5, -20, -27,  15, -14, -66,  10, -60,  -9,   5,  17,  24, -73,-192, -31; D=-23;
/I:         I=-23; DM=-58;
/M: SY='G'; M= -37, -42,-175, -31,-193,  89, -41, -64, -38,-194,-185, -20, -92, -85, -46,  -2, -63, -81,-189, -57; D=-23;
/I:         I=-23; DM=-58;
/M: SY='W'; M=-188,-213,-216,-193, -30,-187,-214,-185,-185,-109,-185,-208,-192,-185,-189,-195,-200,-199, 180,-140;
/M: SY='T'; M= -28,-182,  34, -68, -22, -53, -41, -35,  22, -72, -51,   2,-179, -57,  -6,  30,  64, -13,-194, -61;
/M: SY='F'; M= -18,-182, -43, -50,  35, -71,-178,  12, -61,   2,  20,   9,  13, -23, -52, -12,  20,  35, -24,  -9;
/I:         I=-16; MD=-40;
/M: SY='P'; M= -12, -38,  -6, -48, -19,  27,-174,-111, -55, -98,   8,  33,  83, -17, -37, -25, -16, -50,-188, -18; D=-16;
/I:         I=-16; MD=-40;
/M: SY='P'; M=   1,-185,  -6, -52,   8,  -4, -61, -22,-176, -51, -36, -25,  58, -30,-181,  10,  28,  24,   2,  -9; D=-16;
/I:         I=-16; MD=-40;
/M: SY='N'; M=   5,-185,  45, -86, -94,  13,  -8,-101, -40,-190,-182,  76,   6,   0, -82,  23, -32, -55,-199,-182; D=-16;
/I:         I=-16; MD=-40;
/M: SY='N'; M=  -2, -55, -54,  10,-201,  10, -73, -58, -28, -65, -34,  19,  19, -56, -49, -20, -13, -35,-208, -79; D=-16;
/I:         I=-16; MD=-40;
/M: SY='N'; M=  -6,-207,  24,   2,-210, -65,-192,-114, -43, -53,-201,  25, -25, -50, -49,   3, -16,-202,-218, -79; D=-16;
/I:         I=-16; MI=0; MD=-40; IM=0; DM=-40;
/M: SY='Y'; M=-188,-196, -97,-192,  23, -86,-161,-169,-186,   0,-165,-190,-201,-182,-183, -77,-182, -71,-151, 122; D=-16;
/I:         I=-16; DM=-40;
/M: SY='T'; M=  11, -53,   4, -16,-189, -44, -64,-185, -31,-119,-181,  42, -87,  30, -66,  32,  54, -67, -44, -29; D=-16;
/I:         I=-16; DM=-40;
/M: SY='D'; M=  23,-186,  53, -16,-186, -40,  17,-102,   1, -60,-178,   7,-181,  22, -13,  16,  18, -79, -41, -10; D=-16;
/I:         I=-16; DM=-40;
/M: SY='W'; M=-105,-208,-210, -74,-153,-185,-209,-181,-183, -44,   0,-204,-190,-182,-186,-191, -61,-193, 179,-140; D=-16;
/I:         I=-16; DM=-40;
/M: SY='A'; M=  85, -38,-176, -99,-182, -74, -27,-103,-105, -83,  -9,-170,   4,-169,-177,  38, -18,  -3,-189,-179;
/M: SY='S'; M=  43,-179,   9,  17,-184, -28, -62, -55,   0, -98,  -8,  11, -53,  -7, -27,  59, -24, -37,-190, -87;
/M: SY='N'; M=   2,-183,  -6, -31, -63,  40, -19,-106,  23,-187,-178,  48, -36,   2,  30,  29, -11,-182,-189, -75;
/M: SY='K'; M=-172,-186,-165, -14, -96,-179,  38, -16,  68, -67,  -9,  43,-178,  51,  26, -34, -33, -14,-186, -16;
/M: SY='T'; M= -12,-181, -10, -36,-183, -46,   1,-101,  20, -68,  -7,  37, -35,  12,  49,  -6,  63, -51,-192,-175;
/M: SY='F'; M= -78,-183,-193, -73, 117,-191,-177, -15,-186, -15,-159, -89,  12,-192,-185,-182,-175, -53,-156,  -4;
/M: SY='H'; M= -23,-185,-170, -30,  16, -69,  66, -30,  23,-117, -74, -27,-180,  50,  23,   9,   2,   0,-177,  49;
/I:         I=-36; MI=0; MD=-90; IM=0; DM=-90;
/M: SY='V'; M=  20, -44,-186,-180, -52,-185,-186,  26, -22,  -2, -25, -87, -19, -52, -55, -89, -20,  81,-190,-170;
/M: SY='G'; M= -58,-184, -44, -98,-188,  99,-175,-193,-175, -92,-182,  30,-178,-173,-182,  -9, -69, -89,-185, -40;
/M: SY='D'; M=-176,-189, 123, -62,-195, -73,-163,-192, -67,-190,  -5, -46,-176,-163,-172, -62,-166, -89,-210,-179;
/M: SY='T'; M= -34,-178, -55, -59, -73,-175, -46,  11,  15,-110, -27,  -9, -32,   1, -40,  46,  67,  19,  43,  -9;
/M: SY='L'; M= -72,-179, -61,-184, -67,-194,-179,  36, -74,  86,-141,-189,-190,-179, -71,-183,-170, -11,   0, -41;
/I:         I=-9; MD=-22;
/M: SY='V'; M=-108,   2, -64,  17, -49, -11, -73,   4, -40, -42, -31, -51,-183, -71, -74,   2, -39,  79,  42, -26; D=-9;
/I:         I=-9; MD=-22;
/M: SY='F'; M=-183,-181,-191, -67, 124,-190, -65,-160,-184,-104,-162, -15,-193, -84, -99, -83, -30, -81,  24,-132; D=-9;
/I:         I=-9; MD=-22;
/M: SY='N'; M= -70,-182, -40, -14, -92, -50, -65, -61,  66, -15,   4,  66, -89,  24,  12,  -4,  -5, -49,-187, -59; D=-9;
/I:         I=-9; MD=-22;
/M: SY='Y'; M=-178, -55,-180,-181,  44,-186,  -8, -63,-173, -36,-160, -38, -10,-172,  -4, -56, -10, -72,  -6, 121; D=-9;
/I:         I=-9; MD=-22;
/M: SY='N'; M= -14,-184,  47, -17,-187, -13, -20, -36, -44, -72, -60,  47,  10,  19,  -9,  25,  30, -36,-196,-179; D=-9;
/I:         I=-9; MD=-22;
/M: SY='P'; M=  33,-189, -13, -95, -38, -30, -59,-185,  22, -49, -70, -11,  48, -28, -17,  14,  12,-105,-193, -43; D=-9;
/I:         I=-9; MI=0; MD=-22; IM=0; DM=-22;
/M: SY='G'; M=  10,-181,  -5,  13, -74,  57, -50,-182,   9, -98, -38,  11,  -3,   0, -27,  22,  11, -48,  -6, -57;
/M: SY='Q'; M=  19,-179, -16, -19,  -6, -11, -72, -53,   3, -36,  -6,  21, -52,  46, -10,  14,  19,  18,-181,  11;
/M: SY='H'; M= -92,-187,  49, -65, -23, -33, 134,-189, -63,-179, -65,  23, -94, -20, -42, -34,-170,-189,-197,  -1;
/M: SY='N'; M= -76,-177,  59, -56,-184, -58,-163, -65, -85,-184,-178,  79,-174, -60, -64,  65,  45, -79,-198,-177;
/M: SY='V'; M= -71,   9,-190,-184,-162,-191,-191, -24,-180, -24,-151,-185,-187,-183, -26,-174, -56, 105,-195,-170;
/M: SY='V'; M=   3,-178, -32, -82,  -4,-115,   3, -16, -75,  44,   4,-177,-184,  -7, -94, -66,  15,  55, -34,  32;
/M: SY='Q'; M= -35,-185, -47,  68,-177, -82, -25,-108,  11,  14, -24,-166,-174,  81, -16,-106, -52,   7, -54, -30;
/M: SY='V'; M= -34,-174, -89,-183, -70, -60,-188, -88,-181,   5, -26,-183,-186,-183,-183,-172,  -3, 101,-192, -82;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='T'; M= -51,-177,  58, -45, -60, -25,-165,-100, -60, -75,-175,  55, -76, -72, -24,  53,  66,-174,-193, -35;
/M: SY='K'; M=  14,-184, -40,  52, -51, -22,  14,-180,  64, -35, -38,-161, -47,  41,  29, -18,-166, -68,-183,-172;
/M: SY='E'; M=  43,-178,  10,  48, -44, -18,-170,-176, -15, -31,-171,   0, -99, -12, -42,  15,  46, -63,  31,-173;
/M: SY='D'; M=  33,-180,  73,  28,-184,  26, -60, -31, -59, -55,-175, -11,-174,-163, -67,  17,  -9, -17,-192,-178;
/M: SY='Y'; M= -74, -43,-183,-184,  75,-187, -43,-163,-176, -68,-158,-181,-192,-175, -57,-176,-174,-168,   1, 127;
/M: SY='D'; M=   0,-184,  70,  29, -29,-115, -22, -99,  31, -74,  -7,  24,-176,  21,  11, -27, -18, -48,-188, -12;
/M: SY='S'; M=  35,-177, -15, -71, -61, -19,   7,-176, -12, -36, -24,  43, -61, -18,  -2,  50,  43,-171,-187, -14;
/M: SY='C'; M=-170, 158, -56,-189,-179,-185,-189,-185,-185, -81, -35,-176,-200,-192,-191,-173,-170,-174,-209,-190;
/M: SY='N'; M= -31,-178,  50, -20,-184, -11, -27, -40, -48,-182,-176,  80,-176, -62, -30,  37,  42, -32,-197,-177;
/M: SY='T'; M=  23,   1, -20,-171,  13, -34, -72,  -6, -10, -19,   4, -41,  -4, -27, -53,  22,  53,  19,-185, -60;
/M: SY='T'; M= -10,-179,  14, -14,-183,  17,-170,-105,  -5, -74, -14,  17,  20, -24,  -7,  49,  56, -86,-191,-177;
/M: SY='N'; M= -41,-181,  14, -28, -46,  36,  29,-186,  21,-186,-177,  74, -28, -24, -13,  24,  12,-103, -44,-175;
/M: SY='P'; M=  23,-185, -32, -50, -65,   4, -11, -63, -50, -59, -26,  10,  91, -37, -41,   0,  -1, -20,-187, -29;
/M: SY='I'; M=   8, -35, -90,-176, -52, -91, -34,  56,   2,  18, -21, -28,  -1, -30, -31,  -9,  -9,  36,-184, -29;
/M: SY='A'; M=  34,-181,   3, -29, -26, -22, -38, -31,   1,  -3, -24, -19,   6,  11,  33,  28, -37, -17,-184, -28;
/M: SY='N'; M=  -5,-180,  -8, -44, -39, -29, -27, -12,  -8,  -6,   6,  36, -32,  10,   6,  18,  29,   9,   4,   9;
/I:         I=-28; MD=-70;
/M: SY='Y'; M= -15, -24,  23, -38,  47, -73,  39, -66, -72, -11, -10, -84, -44, -36, -55,   6,  17, -26,  31,  72; D=-28;
/I:         I=-28; MD=-70;
/M: SY='T'; M=  -7, -70, -13,  -6, -21, -82,-172, -51, -14, -63,-175,  39, -24, -31,  -8,  34,  62, -57,   7,  -8; D=-28;
/I:         I=-28; MD=-70;
/M: SY='D'; M= -10,-186,  47, -41, -14,  -4, -34,-106, -48,-110,-179,   8, -15, -13,   5,  31,  38, -22,   0, -61; D=-28;
/I:         I=-28; MI=0; MD=-70; IM=0; DM=-70;
/M: SY='G'; M= -48,-184, -79, -99,-190, 102,-178,-195,-177, -82,-182, -86, -21,-173,-184,  12,-172,-189,-184,-185;
/M: SY='N'; M= -15,-183,  31, -41,-184, -30,  48, -89, -23,-116, -37,  70,  55, -40,  12,  28, -53, -69, -54, -29;
/M: SY='D'; M=   3,-178,  79, -78, -80, -38, -43, -64, -72, -84,-175, -31, -35, -49,-173,  22,  72, -16,-197,-176;
/I:         I=-14; MI=0; MD=-36; IM=0; DM=-36;
/M: SY='T'; M=  -1,-179,-171, -19, -68, -53,   4, -37,  24, -26, -31, -16,-178,  10,  36,   3,  47,  37,-186, -17;
/M: SY='V'; M= -98,-180,-188, -36,  65,-191,-182,  46,-181, -29, -27,-183, -59,-182, -61, -68, -22,  70,  -2,  20;
/M: SY='T'; M=  -6,-181, -26,  21, -45,-176, -23, -15,  14, -47, -17,   2,  45,  27, -33, -22,  66, -26,-189,-174;
/M: SY='L'; M= -57,-178,-191,-184,  19, -80,-178, -14,-185,  87,-142,-188, -46, -58,-183,-181, -26, -13,-177, -42;
/M: SY='D'; M= -14,-182,  55, -69,-184, -24, -62, -31,  20, -42,-174,  40,  43, -72, -11,  15,  45, -80,-193,-177;
/M: SY='K'; M=  19,-182, -33,  20, -87, -37,  -1,-177,  49, -37, -80,  -3, -45,   8,  41,  13,  15, -37,-185, -23;
/I:         I=-33; MD=-84;
/M: SY='P'; M=  31,-185, -55, -25,-184, -94, -31, -52,-173, -72, -15, -26,  75, -69, -81,  35,  29, -16, -15, -27; D=-33;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='G'; M=  -7,-185, -62, -40,-189,  96,-177, -66,   2,-189,-180,-160,-177, -28,  -9, -63,-173, -70,-183,-183;
/M: SY='P'; M= -69,-182, -13, -29, -15,-109,  -7, -40,  -7, -53,   7, -85,  69, -42,  11,  18,  59,   3, -51, -18;
/M: SY='Y'; M= -34,-185,-172, -74,  39, -81,  73,-174, -57, -39, -25,  18, -59, -22,  48,  -2,  -5, -92,  23,  74;
/M: SY='Y'; M=-180, -65,-182,-182,  43,-187,  37,-166,-176, -77,-161,-180, -39,-173, -62, -68, -48, -52,  69, 124;
/M: SY='F'; M= -42,-182,-193,-189, 118,-189,-174, -23,-183,-153,-161,-183,-193,-189, -43, -25,-174, -77,  13,  42;
/M: SY='I'; M=  -6, -37,-189,-186,  14, -83,-187,  90,-183, -26,-151,-180, -62,-181,-186,  -2,  -3,  21,-181, -33;
/M: SY='C'; M=-162, 131,-178,-179, -64, -28,-179,-184,-177, -92,-178, -57, -65,-175,-182,  74, -39,-175, -37, -37;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='G'; M= -30,-181,  -8,-172,-187,  78, -38,-187,-111,-116,-179,  -1, -13, -20,-178,  42,  44,-181,-189,-181;
/M: SY='V'; M=   8,-180,  20,  -2,  17,-111, -38,  24, -20, -41,  20,  24,-180,  -1, -37, -96,  23,  38,-185, -14;
/I:         I=-28; MI=0; MD=-70; IM=0; DM=-70;
/M: SY='P'; M= -11,-189, -38,  -6,-188,  37,   8, -26, -13, -54,-177, -21,  77, -42, -26,  21, -60, -50,-190, -79; D=-28;
/I:         I=-28; DM=-70;
/M: SY='G'; M=   0,-183,  25, -11,-187,  71, -69, -58, -34, -93,-179,  11, -23, -39, -20,  21,  -9, -62, -22,-180;
/M: SY='H'; M=-176,-188, -15, -71, -61,-179, 134,-187, -65, -61,-165,  12,-180,  16,   8, -23, -25,-187,-192,  33;
/M: SY='C'; M=-171, 156,-189,-189,-181,-186,-190,-187,-185,-101,-178,-176, -16,-192,-192, -73, -35,-175,-209,-191;
/I:         I=-29; MI=0; MD=-75; IM=0; DM=-75;
/M: SY='E'; M=   6,-183,  -3,  41, -18, -44,-167,-175,  20,  -2, -51,  38, -52,  27,   9,   4, -13, -40, -39, -35;
/M: SY='Q'; M=  22, -42, -31, -29, -59,  27,  23,-179,  23, -10, -20,  33, -60,  41,   4,  -5, -29, -97,-187, -40;
/M: SY='G'; M= -91,-186, -92, -95,-191, 101, -38,-196,-100, -91, -64,  -4, -59, -66, -73, -87, -25,-191,-186,-186;
/M: SY='M'; M= -93,-186, -66, -19,-175, -81,-163, -59,-162, -24, 114,-170, -64, 101, -61, -63, -67, -50,-184,-167;
/M: SY='K'; M= -38, -39,-168,-155,-187,-180,  -8,-188, 102, -81,-175, -64, -60,-152,  54, -72,-169,-184,-184,-175;
/M: SY='L'; M=-108,-180,-194,-187,  50, -89,-180,  -1, -77,  66,  59,-189,-191,-182, -73,-183,-171,  36,-178,-157;
/M: SY='A'; M=  44,-180, -42,  -4, -31,-101,  16,  20,  -1, -59,  12, -17, -40, -16,  -8,  19,   9, -12, -35,   3;
/M: SY='I'; M= -77,-182,-193,-188, -62,-195,-194,  80,-186, -49,-151,-186, -33, -47,-188, -64, -84,  77,-190,-170;
/M: SY='T'; M= -30,-181,  14, -16, -50,-179,  -1, -54,  11, -35, -25,  49, -87, -24,   9, -36,  55,  27,-194, -49;
/M: SY='V'; M=  17,-179,-187,-181,-171,-186,-190, -15,-179,-158,-159, -54,  31,-182, -27, -87, -16,  91,-196,-176;
/M: SY='M'; M= -14,-183, -65, -10, -79, -38,  11, -23, -34,  23,  53, -12, -14,  12,  -8,  12,   9,  16,-190, -90;
/M: SY='P'; M=  17,-188,   4,  -3, -82,  -8,   7,-183, -26, -55,-179,  21,  53, -37, -59,  37, -30, -31,-194, -35;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 20 in 20 different sequences
Number of true positive hits 20 in 20 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] Phytocyanin
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
20 sequences

BABL_ARATH  (Q8LG89), BABL_CUCSA  (P00303), BABL_LILLO  (P60496), 
BCB1_ARATH  (Q07488), BCB2_ARATH  (O80517), BCP_PEA     (Q41001), 
CPC_CUCSA   (P29602), ENL1_ARATH  (Q9SK27), ENL1_ORYSJ  (Q5JNJ5), 
ENL2_ARATH  (Q9T076), ENL3_ARATH  (Q8LC95), LAML_ARATH  (Q39131), 
MAVI_CUCPE  (P80728), MPAA3_AMBEL (P00304), NO16_MEDTR  (P93328), 
NO20_MEDTR  (P93329), NO551_SOYBN (Q05544), NO552_SOYBN (Q02917), 
STEL_TOXVR  (P00302), UMEC_ARMRU  (P42849)
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PDB
[Detailed view]
6 PDB

1JER; 1WS7; 1WS8; 1X9R; 1X9U; 2CBP

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