Entry: PS51500

General information about the entry
Entry name SIN
Accession number PS51500
Entry type MATRIX
Date JUL-2010 (CREATED); JUL-2010 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC51500
Associated ProRule PRU00833
Name and characterization of the entry
DescriptionSin domain profile.
Matrix / Profile 
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=39;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=36;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5733585; R2=0.0192588; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=412; N_SCORE=10.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=204; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;

                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M:         M=-12,-14,-22,-17, -6,-11,-26, -5, -4, -1, -2, -2, -8,-21, -6, -8,-10,-10, -3,-23, -4, -7;
/M: SY='R'; M=-10, -9,-24,-12,  2,-18,-22, -3,-14,  3, -7,  2, -1,-18,  3,  4, -3, -8,-13,-25,-14,  2;
/M: SY='N'; M= -9,  7,-24,  4,  4,-18,-12, -1,-23,  3,-22,-14, 12,-16,  1, -5,  3, -6,-20,-26, -8,  2;
/M: SY='K'; M= -9,  1,-23, -3,  2,-24,-17, -9,-20,  9,-17, -7,  8,-13,  4,  3,  3,  9,-14,-27,-19,  3;
/M: SY='N'; M=-12,  0,-24, -4,  2,-20,-19, -2,-16,  2,-13, -2,  6,-17,  4, -1, -1, -8,-14,-28,-14,  3;
/M: SY='E'; M= -7, -7,-23, -3,  5,-14,-18,-11,-12, -2,-13, -7, -7,-16, -1,-11, -1, -4, -8,-23,-11,  3;
/M: SY='T'; M= -9, -4,-23, -1,  1,-16,-20,-11,-19,  1,-18,-10, -5, -4, -2, -8,  0,  3,-14,-23,-13,  0;
/M: SY='E'; M= -5,  4,-27,  2, 10,-26, -6, -2,-28,  9,-25,-16,  6,-13,  5, -1,  5, -5,-20,-29,-18,  8;
/M: SY='E'; M= -8,  5,-27,  8, 16,-25,-18, -7,-19,  3,-20,-11,  0,-13, 13, -4,  1, -7,-14,-30,-18, 15;
/M: SY='L'; M=-10,-29,-12,-29,-24, -5,-35,-26, 18,-19, 25, 12,-22,-27,-19,-21,-17, -8, 11,-25,-12,-25;
/M: SY='D'; M=-18, 27,-29, 44, 18,-26,-15,-11,-23, -9,-30,-23,  4,-12, -1,-18, -2,-10,-23,-37,-26,  9;
/M: SY='E'; M= -9, -5,-29, -3, 13,-25,-20, -7,-25, 10,-20,-11, -6,  1, 11, -1,  0, -9,-18,-26,-14, 12;
/M: SY='E'; M=-11, 14,-39, 25, 46,-30,-19, -1,-30,  7,-31,-21,  1,-10, 17, -3,  0,-10,-21,-31,-21, 36;
/M: SY='W'; M=-30,-40,-20,-40,-30, 10,-20,-20,-30,-30,-20,-10,-40,-40,-20,-30,-30,-20,-30,110, 20,-30;
/M: SY='V'; M= -7,-23,-15,-23,-13,-10,-30,-21, 13,-11,  6,  7,-20,-21,-10,-15,-13, -4, 15,-25, -9,-12;
/M: SY='Q'; M= -5, -7,-15, -4,  0,-21,-17,-15,-12, -6,-11, -7,-10,-17,  1,-10, -4, -6, -8,-26,-18,  0;
/M: SY='L'; M=-10,-39,-10,-39,-30,  0,-40,-30, 22,-21, 38, 19,-30,-30,-21,-21,-20,-10, 12,-21,-10,-30;
/M: SY='I'; M= -8,-32,-10,-32,-26, -2,-36,-28, 28,-22, 22, 20,-28,-26,-20,-24,-18, -8, 24,-24,-10,-24;
/M: SY='K'; M= -4,-15,-20,-18, -2,-20,-23,-14,-12,  9, -1,  2,-12,-16,  9,  3, -6, -8, -8,-25,-14,  0;
/M: SY='E'; M=-11,  8,-37, 16, 39,-27,-20,  3,-28,  9,-27,-16,  0,-11, 16, -1, -1,-11,-19,-29,-18, 32;
/M: SY='A'; M= 40,-20,  0,-20,-10,-20,  0,-20,-10,-10,-10,-10,-20,-10,-10,-10, 10,  0,  0,-30,-20,-10;
/M: SY='R'; M=-10,-17,-21,-22, -8,-17,-27,-13, -7,  9,  0,  8,-11,-20,  2, 11,-10,-10, -7,-24,-15, -5;
/M: SY='K'; M=-10,  5,-28,  4, 11,-26,-13, -5,-24, 13,-23,-15,  4,-13,  3,  1,  1, -6,-19,-30,-19,  8;
/M: SY='M'; M=  2,-19,-14,-18, -7,-14,-21,-18, -1, -8,  3,  6,-15,-17,  1,-11, -2, -5,  1,-24,-14, -5;
/M: SY='G'; M= -1, -7,-30, -9,-19,-30, 56,-18,-39,-19,-39,-29,  4,-20,-19,-19,  1,-19,-30,-21,-29,-19;
/M: SY='I'; M= -8,-34,-10,-34,-27, -2,-37,-29, 27,-22, 26, 17,-29,-27,-21,-24,-19, -8, 23,-24,-10,-26;
/M: SY='S'; M=  5, -5,-12, -6, -3,-20,-10, -8,-17, -4,-16,-10,  4,-11, -1, -8, 21, 21,-12,-25,-17, -2;
/M: SY='K'; M= -6,-19,-18,-23,-12,-16,-28,-21,  2,  5,  3,  1,-18,-14,-10, -8,-10, -8,  4,-29,-16,-12;
/M: SY='E'; M=-12, 14,-35, 21, 32,-30,-13, -3,-31,  6,-31,-20,  5,-11, 16, -3,  1,-10,-23,-31,-21, 26;
/M: SY='E'; M=-13, 16,-36, 28, 38,-30,-17, -3,-30,  5,-31,-20,  3,-10, 19, -4,  0,-10,-23,-31,-21, 31;
/M: SY='I'; M= -8,-30,-13,-30,-25, 11,-32,-25, 25,-25, 10,  7,-30,-28,-25,-30,-20, -8, 25,-20,  0,-25;
/M: SY='R'; M= -9, -9,-27,-14,  4,-26,-21, -6,-22, 16,-15, -8, -3,-18,  6, 27, -5, -9,-21,-29,-19,  2;
/M: SY='E'; M= -9, -2,-28, -3, 14,-20,-19,  7,-23,  6,-21,-13,  0,-15,  8,  6,  0, -9,-19,-25, -8, 12;
/M: SY='F'; M=-20,-30,-20,-30,-27, 52,-30, -2, -3,-27, -3, -3,-27,-37,-25,-27,-20,-20,-10, 13, 41,-27;
/M: SY='L'; M=-11,-36,-12,-36,-29,  9,-37,-26, 16,-22, 29, 14,-28,-31,-22,-22,-18, -8,  7,-15, -4,-29;
/M: SY='E'; M=-10,  3,-26,  0,  7,-24,-17, -2,-22,  7,-18, -9,  5,-15,  6,  5, -2, -7,-19,-29,-17,  6;
/M: SY='S'; M= -4,-16,-18,-18,-13, -6,-11,-12,-13, -9, -9, -6, -8,-21,-10, -6,  2,  0,-13,-18, -7,-13;
/M: SY='N'; M= -6,  0,-23, -1,  4,-21,-11, -2,-19, -1,-18, -6,  5,-15,  5, -5,  4, -7,-15,-27,-15,  5;
/M: SY='K'; M=-11, -1,-30, -9,  8,-30,-19, -2,-30, 32,-22,-12,  2, -7,  9, 19, -3,-10,-23,-30,-18,  8;
/I:         E1=0; IE=-105; DE=-105;
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 6 hits in 6 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 6 hits in 6 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • MATRIX_TYPE: protein_domain
  • Scaling database: UniProtKB/Swiss-Prot: reversed
  • Matrix author: CJA_Sigrist
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • FT_KEY: DOMAIN
  • FT_DESC: Sin
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
SINI_BACLI  (P22755), SINI_BACSU  (P23308), SINR_BACLI  (P22753), 
SINR_BACSU  (P06533), SLRA_BACSU  (P0C8M5), SLRR_BACSU  (P71049)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1B0N; 2YAL;

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