Entry: PS51513

General information about the entry

Entry name [info] FFD
Accession [info] PS51513
Entry type [info] MATRIX
Date [info] MAY-2010 (CREATED); OCT-2013 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC51512
Associated ProRule [info] PRU00846

Name and characterization of the entry

Description [info] FFD box profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=17;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=16;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8480844; R2=0.0086703; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1253.40837; R2=6.71284; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=941; N_SCORE=11.0; H_SCORE=6792; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=422; N_SCORE=6.5; H_SCORE=4080; MODE=1; TEXT='?';
/DEFAULT: M0=-86; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='P'; M=   1,  16,-142, -40,-148, -25, -46,   1,  36, -28,-136, -69,  77, -34, -82, -16,  38,  16,-157,-146;
/M: SY='F'; M=  52, -10,-147,-145,  53,   5, -74, -86, -31, -52, -22, -10, -44,-142, -66,   2, -19,  35,-142,  33;
/M: SY='Y'; M=-149,-160,  -9,-148, -98,-155,-115,-135,-142,-132,-128,-147,-160,-138,-140,-143,-143,-140,-106, 143;
/M: SY='N'; M= -95,-150,  75, -66,-153,-138,  32,-144,   5,-151,-144,  89,-147,   2,-134,   0, -49,  21,-170,-144;
/M: SY='K'; M=-141,-157,-134, -14,-157,-148,-136,-157, 104,-156,-144,-129,  49,-120,  40,-136,-136,-153,-151,-145;
/M: SY='D'; M= -20,-150,  70, -24,-157, -64,-134,-153,  39,-154,-147,  -7,-142,  49, -64,  57,  29,-148,-162,-145;
/I:         I=-30; MD=-77;
/M: SY='K'; M= -72,-172,-157, -76,-176,-163,-160, -47,  64,-174,-166,-149,-164, -45, -26,  49, -16,-167,-177,-166; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='S'; M=-126, -23,  61, -42,-156,  12,-135,-156, -30,-157,-151,   1,-143,-128,-139,  96,-121,-149,-163,-146;
/M: SY='F'; M=-153,-149,-166,-161, 131,-160,-145,-126,-156,-118,-128,-154,-164,-167,-153,-152,-145,-132,-118, -96;
/M: SY='F'; M=-153,-149,-164,-160, 129,-160,-142,-127,-155,-119,-128,-154,-163,-165,-152,-151,-145,-132,-117,  28;
/M: SY='D'; M=-145,-159, 128,-108,-166,-142,-131,-164,-132,-162,-161,-113,-144,-132,-141,-133,-135,-161,-181,-148;
/M: SY='N'; M= -63,-144, -12,  22,-153,-133,-131,-150, -35,-154,-146,  90,-143,-127, -81,  68,  50,-146,-165,-146;
/M: SY='I'; M=-143,-152,-163,-159,-123,-166,-154,  97,-155,  54,  37,-156,-154,-150,-156,-152,-138,-103,-150,-132;
/M: SY='S'; M=-120,-141,-133,-135,-151,-129,-137,-149,-134,-153,-147,-122,-141,-127,-139, 114,  34,-141,-161,-144;
/M: SY='C'; M=-131, 119,-143,-143,-147,-142,  29,-149,-139,-148,-144,-133,   9,-139,  -3,  74,   4, -33,-163,  -7;
/M: SY='E'; M=-135,-153,  53,  78,-159,  15, -25,-159,-127,-157,-150,  58,-140,  -3,-135,  25, -24,-154,-163,-148;
/M: SY='A'; M=  57,-145,  -3,   1,-148,-137,-141, -48, -27, -32,  27, -57,  12,   5,-140,  37,  48, -28,-157,-144;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] MOTIF
Feature description [info] FFD box
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

DCP5L_ARATH (Q9FH77), DCP5_ARATH  (Q9C658), L14AA_XENLA (A0A8M2), 
L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), L14BB_XENLA (Q498K9), 
LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), LS14A_MOUSE (Q8K2F8), 
LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), LS14B_HUMAN (Q9BX40), 
LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), LSM14_PLEWA (Q9YH12), 
SCD6_YEAST  (P45978), SUM2_SCHPO  (Q9HGL3)
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