Entry: PS51514

General information about the entry

Entry name [info] BRX
Accession [info] PS51514
Entry type [info] MATRIX
Date [info] DEC-2010 (CREATED); OCT-2013 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC51514
Associated ProRule [info] PRU00847

Name and characterization of the entry

Description [info] BRX domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=56;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=51;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8074477; R2=0.0077273; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4709.83462; R2=22.12404; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=867; N_SCORE=9.5; H_SCORE=21015; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=310; N_SCORE=5.2; H_SCORE=10993; MODE=1; TEXT='RR';
/DEFAULT: M0=-41; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='K'; M=  28, -80,  13,  21, -86, -70, -66, -83,  50, -83, -75,  14,  17, -55,  28,  30,  12, -76, -88, -76;
/M: SY='E'; M= -67, -89, -41, 108, -91,  -9, -62, -93,   4, -85, -81, -64, -64, -43, -58, -64, -69, -85, -87, -81;
/M: SY='W'; M= -78, -96, -92, -80, -54, -82, -91, -19,   3,  -8, -71,  10, -85, -73,   7, -81, -82,  -8, 161, -45;
/M: SY='I'; M= -68, -80, -90, -87,  11, -93, -88,  83, -83, -44,  37, -81, -82, -82, -85, -75,   9,  57, -83, -62;
/M: SY='E'; M= -20, -87,   6, 101, -85, -82,  52, -86, -54, -15, -74, -63, -67, -46, -62, -65, -69, -81, -90, -74;
/M: SY='Q'; M= -69, -90, -58,  59, -73, -80, -57, -76, -53,  -1, -64, -64, -74, 105, -56, -63, -70, -78, -72,  50;
/M: SY='C'; M=   6,  67,  58, -68,  52, -80,  31,   0, -75, -63, -64, -67, -84, -76, -78, -69, -67,  30, -76,  39;
/M: SY='E'; M= -68, -88, -43, 108, -85, -84, -62, -83, -51,  -2, -73, -66, -66,  10, -60, -66, -69, -79, -87, -78;
/M: SY='P'; M= -21, -93, -68,   6, -92,   9, -72, -84, -63, -89, -77,   5, 109,  18,   4, -66, -67, -85, -86, -86;
/M: SY='G'; M= -58, -84, -73, -82, -86,  97,  37, -84, -77, -85, -77, -59, -77, -74, -83, -59, -74,   8, -84, -80;
/M: SY='V'; M= -59, -74, -87, -82, -63, -87, -90, -30, -80, -50, -52, -82, -85, -82, -82,  15, -57, 101, -96, -70;
/M: SY='Y'; M= -79, -86, -84, -85,  65, -88, -55,  16, -78, -19, -55, -82, -91, -76, -75, -77, -73, -60, -42, 117;
/M: SY='I'; M= -72, -81, -93, -88, -54, -95, -85,  83, -85,  49,  28, -86, -85, -81, -86, -82, -67,  23, -82, -63;
/M: SY='T'; M= -62, -71, -68, -70, -67, -78, -73, -63, -67,   1, -63, -58, -70, -70, -74, -48, 110, -58, -86,  24;
/M: SY='L'; M= -72, -79, -82, -82,  34, -87, -74,  22, -79,  49, -49,  28,  16, -78, -81, -76, -66,  42, -74,  31;
/M: SY='I'; M=  12, -79, -78, -76, -72,  32, -80,  44, -66, -61, -60, -69, -79, -71,  40, -62,  38,  43, -87, -73;
/M: SY='S'; M=  37, -75, -75, -70, -70, -72, -74,  27, -66,  18, -59, -67, -77,  -3,  21,  47,  28,  -4, -86, -71;
/M: SY='H'; M= -21, -80,   5,   5,  15, -79,  63, -60, -70,  55, -53, -69, -82, -65, -14,  34, -65, -63, -78,  20;
/I:         I=-28; MD=-71;
/M: SY='P'; M=   3, -98, -82, -72,-100, -81, -84, -92,   7, -98, -87, -80,  96, -76, -14,  25, -72, -90, -97, -94; D=-28;
/I:         I=-28; MI=0; MD=-71; IM=0; DM=-71;
/M: SY='D'; M=  -4, -81,  70, -61, -89,  67, -68, -90, -68, -90, -82,  38, -75, -67, -76,   2,   3, -84, -93, -81;
/M: SY='G'; M= -59, -85,   0, -79, -90, 100,  31, -98, -76, -93, -82, -57, -76, -73, -82, -58, -75, -92, -84, -82;
/M: SY='T'; M=  -4, -78, -66,  -1, -80,  43, -72,  -3,   7, -75, -70,  14, -73, -64,  26, -55,  69, -22, -88, -76;
/M: SY='R'; M= -70, -82, -63,   1, -79, -79, -65,  -4,  59, -18, -67,  35, -76, -54,  68, -62,  37, -71, -86, -72;
/M: SY='I'; M=  -5, -84,  46,  49, -77,  -8, -72,  53,   4, -65, -64, -63, -74,  17, -68, -65,   3,  -3, -88, -74;
/M: SY='L'; M= -76, -79, -91, -84,  35, -92, -77,   5, -85,  82, -40, -90,  16, -80, -83, -84, -71, -49, -75, -57;
/M: SY='K'; M= -72, -87, -66, -52, -86, -80, -64, -88,  93, -85, -73, -59, -75, -47,  77, -66, -68, -83, -81, -72;
/M: SY='R'; M= -75,  34, -71, -62, -75, -84,  72, -89, -39, -80, -69, -63, -84, -52, 105, -69, -74, -84, -82,  25;
/M: SY='V'; M= -64, -76, -92, -86, -59, -93, -90,  42, -84,  22, -46, -87, -87, -84, -85, -77, -61,  89, -90, -67;
/M: SY='R'; M= -70, -88, -62,  44, -84, -81,  37, -90,  -6, -83, -73, -62, -77, -48,  98,  15, -68, -84, -86, -70;
/M: SY='F'; M= -79, -79, -91, -88, 114, -87, -71, -57, -83, -10, -58, -81, -92, -89, -81,   1, -72, -62, -50,  43;
/M: SY='S'; M= -55, -75, -60, -64, -83, -60, -63, -83, -56, -86, -77,  52, -75, -55,  40,  95, -49, -77, -91, -74;
/M: SY='R'; M= -70, -84, -69, -62,  17, -80, -64, -73,  34, -75, -69,  24, -81, -54,  91,   3, -66,  14, -82, -66;
/M: SY='R'; M= -67, -81,  -4,  17,  18, -79, -67, -69,  28,  17, -64, -64, -78, -57,  61,  36,   3, -21, -82, -65;
/M: SY='M'; M=  -4,  58, -78, -70, -70, -82,  33,  -6,  16,  -9,  80, -69, -81, -63,  56, -68,   2,   4, -87, -67;
/I:         I=-28; MD=-71;
/M: SY='F'; M=  -3, -85, -95, -87,  95, -91, -82, -62, -86,  -3, -64, -86, -95,  22, -85, -20, -77,  -2, -67, -46; D=-28;
/I:         I=-28; MI=-71; MD=-71; IM=-71; DM=-71;
/M: SY='S'; M= -68,  48, -72, -75, -87,  27, -75, -86,  -3, -13, -79,  39, -85,  -2, -12,  48,   9, -82, -97, -83; D=-28;
/I:         I=-28; DM=-71;
/M: SY='E'; M=  39, -83,   7,  63, -85,   2, -67, -80,  -9, -12, -72,   6,  25,  24, -10, -60, -66, -75, -86, -78;
/I:         I=-21; MI=0; MD=-53; IM=0; DM=-53;
/M: SY='Q'; M=  -8, -84,  10,  -4, -77,  23,  56,   7, -12, -68,  38, -62, -76,  64, -66, -62,   8,   8,  46, -66;
/M: SY='Q'; M= -10, -84, -61,  41,  14, -74,  54, -79,  30, -23, -67, -60, -73,  79, -55,  33, -64, -77, -82, -64;
/M: SY='A'; M=  90, -71, -74, -66, -82, -60, -75, -68, -69, -73, -67, -69, -75,  27, -72,   8, -59,   6, -85, -77;
/M: SY='K'; M= -68, -86,  15,  44, -88, -77, -63, -88,  79, -85, -75, -57, -71,  41,  32,  10, -65, -83, -84, -74;
/M: SY='Q'; M=   2, -80, -70, -65, -76,  -9, -72,  37,  27, -65, -62,  22, -77,  56,  -5, -14,  24,  29, -86, -72;
/M: SY='W'; M= -78,-103, -99, -84, -55,  25, -98, -84, -73, -81, -81, -89, -85, -76,  14, -82, -90, -94, 169, -42;
/M: SY='W'; M= -79,-102, -94, -82, -52,   0,  44, -83, -72, -78, -77, -87, -85, -73,  10, -82, -89, -92, 165,  29;
/M: SY='E'; M= -20, -85, -57,  67, -71, -78, -63,   6,  35, -11, -67,  16,  18,   7, -59,  -1, -65, -70, -77,  38;
/M: SY='E'; M=  19, -85,  41,  83, -89, -76, -63, -79, -55, -79, -74, -61, -69,  63, -61, -61, -66,  -4, -89, -77;
/M: SY='N'; M= -70, -76, -45, -62, -85, -60, -52, -84,  34, -91, -77, 120, -79, -56, -57, -54, -56, -86,-100, -79;
/M: SY='W'; M= -72,  59, -68,   2, -67,  -5, -65, -77,  60,  -1, -68,  23, -80, -59,  36, -68, -69, -77,  60,  46;
/M: SY='E'; M=  14, -83,  18,  61, -79,   3,  38,  28, -63, -69, -67, -64, -73,  22, -69,   0, -65,  17, -89, -72;
/M: SY='R'; M= -70, -88, -68, -58, -86,  28, -65, -90,  70, -86, -74, -60, -77, -51,  88, -65, -71, -85, -82, -73;
/M: SY='V'; M= -66,  46, -89, -82, -61, -92, -87,  51,   8,  22, -49, -82, -86, -80, -78, -76, -63,  73, -89, -68;
/M: SY='C'; M=  -6,  77, -79, -75,  12, -83,  53,  -7, -70,   7,  20, -72, -85,  -4,  15, -69,  10,  -6, -73,  61;
/M: SY='Q'; M=  -9, -85,  -7,  43, -83, -79,  32,   7,  30, -75, -68, -60, -73,  59,  48, -61,  25, -72, -86, -71;
/M: SY='K'; M= -69, -85, -62,  40, -73,   2, -65, -71,  61,   1, -66,  17,  18,  27, -54, -66, -67,   1, -78,  27;
/M: SY='Y'; M= -75, -87, -70, -70, -49, -81,  84, -72, -63, -67,  38,   6,  22, -62,  32, -68,   8, -74, -60,  98;
/M: SY='N'; M= -64, -78,   3,   4,  14,  40, -63, -80, -64, -37, -75,  85, -77, -63, -71,  30,  14, -79, -88, -72;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 22 in 11 different sequences
Number of true positive hits 22 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 3
Feature key [info] DOMAIN
Feature description [info] BRX
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
11 sequences

BRXL1_ARATH (O82281), BRXL1_ORYSJ (Q6YUB8), BRXL2_ARATH (Q8GYL9), 
BRXL2_ORYSJ (Q6ZIK7), BRXL3_ARATH (Q5HZ09), BRXL3_ORYSJ (Q7XPT0), 
BRXL4_ARATH (Q8GZ92), BRXL4_ORYSJ (Q84T65), BRXL5_ORYSJ (Q2QWK1), 
BRX_ARATH   (Q17TI5), RLM3_ARATH  (Q9FT77)
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View entry in raw text format (no links)
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