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PROSITE entry PS51526


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General information about the entry

Entry name [info] RFX_DBD
Accession [info] PS51526
Entry type [info] MATRIX
Date [info] 01-MAR-2011 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51526
Associated ProRule [info] PRU00858

Name and characterization of the entry

Description [info] RFX-type winged-helix DNA-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=77;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=72;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0680783; R2=0.0061025; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=12314.2226562; R2=1.2322274; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1136; H_SCORE=13714; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=727; H_SCORE=13210; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-105; D=-200; I=-200; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 41 in 41 different sequences
Number of true positive hits 41 in 41 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DNA_BIND
Feature description [info] RFX-type winged-helix
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
41 sequences

ARID2_HUMAN (Q68CP9), ARID2_MOUSE (E9Q7E2), DAF19_CAEEL (Q09555), 
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PDB
[Detailed view]
10 PDB

1DP7; 6K15; 6KW3; 6KW4; 6KW5; 6TDA; 6V8O; 6V92; 7VDV; 7Y8R