Entry: PS60008

General information about the entry

Entry name [info] CYCLOTIDE_BRACELET
Accession [info] PS60008
Entry type [info] PATTERN
Date [info] 01-DEC-2004 CREATED; 01-OCT-2005 DATA UPDATE; 07-JUN-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC51052

Name and characterization of the entry

Description [info] Cyclotides bracelet subfamily signature.
Pattern [info]
C-x(0,1)-[ES]-S-C-[AV]-[MFYW]-I-[PS]-x(0,1)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_06 which contains 554'860 sequence entries.


Total number of hits 90 in 90 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.77 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 1
Site [info] disulfide at position 5
Site [info] disulfide at position 11
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
90 sequences

CIRA_CHACT  (C0HKH8    ), CIRA_CHAPA  (P56871    ), CIRB_CHAPA  (P56879    ), 
CIRC_CHAPA  (P84641    ), CIRD_CHAPA  (P84642    ), CIRE_CHAPA  (P84643    ), 
CIRF_CHAPA  (P84644    ), CYC10_CLITE (C0HKG2    ), CYC11_CHACT (C0HKH6    ), 
CYC12_CLITE (G1CWH8    ), CYC13_CHACT (I0B6G2    ), CYC13_CLITE (C0HJS0    ), 
CYC14_CLITE (C0HJS1    ), CYC17_CLITE (P86849    ), CYC1_CLITE  (G1CWH0    ), 
CYC2_CHACT  (I0B6F2    ), CYC4_CLITE  (G1CWH3    ), CYC5_CLITE  (G1CWH4    ), 
CYC6_CLITE  (C0HKF9    ), CYC7_CHACT  (I0B6F4    ), CYC7_CLITE  (G1CWH5    ), 
CYC8_CHACT  (I0B6F5    ), CYC8_CLITE  (G1CWH6    ), CYC9_CHACT  (C0HKH0    ), 
CYC9_CLITE  (C0HKG0    ), CYCA_CLITE  (P86841    ), CYCA_PETHY  (B3EWH5    ), 
CYCB_CLITE  (P86842    ), CYCC_CLITE  (P86843    ), CYCD_CLITE  (P86844    ), 
CYCE_CLITE  (P86845    ), CYCF_CLITE  (P86846    ), CYCG_CLITE  (P86847    ), 
CYCH_CLITE  (P86848    ), CYCJ_CLITE  (P86850    ), CYCK_CLITE  (P86851    ), 
CYCL_CLITE  (P86852    ), CYCM_PETHY  (B3EWH7    ), CYCO_CLITE  (P86901    ), 
CYCP_CLITE  (P86902    ), CYCQ_CLITE  (P86904    ), CYCR_CLITE  (P86903    ), 
CYH1_VIOHE  (P58433    ), CYH2_VIOHE  (P85233    ), CYH4_VIOHE  (P85234    ), 
CYLA_PSYLO  (P56872    ), CYMC1_MELCT (C0HK35    ), CYMC4_MELCT (C0HK38    ), 
CYMC5_MELCT (C0HK39    ), CYMC6_MELCT (C0HK40    ), CYO10_VIOOD (P58442    ), 
CYO11_VIOOD (P58443    ), CYO13_VIOOD (Q5USN8    ), CYO17_VIOOD (P85180    ), 
CYO18_VIOOD (P85181    ), CYO19_VIOOD (P85182    ), CYO1_VIOOD  (P82230    ), 
CYO20_VIOOD (P85183    ), CYO2_VIOBI  (P85526    ), CYO2_VIOOD  (P58434    ), 
CYO3_VIOOD  (P58435    ), CYO4_VIOOD  (P58436    ), CYO5_VIOOD  (P58437    ), 
CYO6_VIOOD  (P58438    ), CYO7_VIOOD  (P58439    ), CYO8_VIOOD  (P58440    ), 
CYO9_VIOBI  (B1NRR2    ), CYO9_VIOOD  (P58441    ), CYVA_LEOCM  (P84637    ), 
CYVA_VIOCT  (P84635    ), CYVB_VIOCT  (P84636    ), CYVC_LEOCM  (P84639    ), 
CYVD_LEOCM  (P84640    ), CYVE_VIOBI  (B1NRQ8    ), CYVF_VIOBI  (P85244    ), 
CYVG_VIOBI  (P85245    ), CYVH_VIOBI  (P85246    ), CYVI_VIOBI  (B1NRQ9    ), 
CYVJ_VIOBI  (B1NRR0    ), CYVK_VIOBI  (B1NRR1    ), HYFLA_HYBFL (P84647    ), 
HYPAA_HYBPA (P58445    ), KAB16_OLDAF (P85134    ), KAB17_OLDAF (P85135    ), 
KAB5_OLDAF  (P58456    ), PABR1_PALRI (B3EWF1    ), VHL1_VIOHE  (P84522    ), 
VHR1_VIOHE  (P83937    ), VITA_VIOAR  (P83840    ), VITA_VIOBI  (B1NRR3    )
» more

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CYCK_PETHY  (B3EWH6    ), CYO25_VIOOD (P85188    ), KAB8_OLDAF  (P85175    )

		
PDB
[Detailed view]
8 PDB

1BH4; 1NBJ; 1VB8; 1ZA8; 2ERI; 2KCG; 2KNM; 2KUX

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