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Entry: PS60024
General information about the entry
Entry nameAGOUTI_1
Accession numberPS60024
Entry typePATTERN
DateOCT-2005 (CREATED); OCT-2005 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC60024
Name and characterization of the entry
DescriptionAgouti domain signature.
PatternC-x(6)-C-x(6)-C-C-x(2)-C-x(2)-C-x-C-x(6)-C-x-C-x(6,9)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 48 hits in 48 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 48 hits in 48 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.76 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 3,disulfide
  • `Interesting' site in the pattern: 5,disulfide
  • `Interesting' site in the pattern: 6,disulfide
  • `Interesting' site in the pattern: 8,disulfide
  • `Interesting' site in the pattern: 10,disulfide
  • `Interesting' site in the pattern: 12,disulfide
  • `Interesting' site in the pattern: 14,disulfide
  • `Interesting' site in the pattern: 16,disulfide
  • `Interesting' site in the pattern: 18,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
AGRP_BOVIN  (P56413), AGRP_HUMAN  (O00253), AGRP_MOUSE  (P56473), 
AGRP_PIG    (Q9TU18), ASIP_BOVIN  (Q29414), ASIP_CALGE  (A1YL78), 
ASIP_CALGO  (A1YL80), ASIP_CALJA  (A1YL77), ASIP_CANFA  (Q5UK76), 
ASIP_CEBPY  (A1YL79), ASIP_CERMI  (Q1XGU9), ASIP_CHLAE  (Q1XGV1), 
ASIP_COLPO  (Q1XGU5), ASIP_ERYPA  (Q1XGV0), ASIP_FELCA  (Q865F0), 
ASIP_GORGO  (Q1XGV5), ASIP_HORSE  (Q95MP2), ASIP_HUMAN  (P42127), 
ASIP_LEOCY  (A1YL81), ASIP_LEORO  (A1YL82), ASIP_MACAR  (A8CEM9), 
ASIP_MACAS  (A8CEN3), ASIP_MACCY  (A8CEM1), ASIP_MACFA  (Q1XGV3), 
ASIP_MACFU  (A8CEM0), ASIP_MACHE  (A8CEM5), ASIP_MACMR  (A8CEM4), 
ASIP_MACMU  (A1YL67), ASIP_MACNE  (A1YL69), ASIP_MACNG  (A1YL68), 
ASIP_MACNR  (A8CEM7), ASIP_MACRA  (Q1XGV2), ASIP_MACSI  (A8CEN1), 
ASIP_MACSL  (A8CEM8), ASIP_MACSY  (A1YL66), ASIP_MOUSE  (Q03288), 
ASIP_PANPA  (Q1XGV6), ASIP_PANTR  (Q1XGV7), ASIP_PAPAN  (A1YL70), 
ASIP_PIG    (Q6ZYM3), ASIP_PONPY  (Q1XGV4), ASIP_RAT    (Q99JA2), 
ASIP_SEMEN  (Q1XGU8), ASIP_TRAAU  (A1YL72), ASIP_TRACR  (Q1XGU6), 
ASIP_TRAFR  (A1YL74), ASIP_TRAOB  (Q1XGU7), ASIP_VULVU  (P79407)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TXD01_LYCSI (B6DD19), TXD02_LYCSI (B6DD20), TXD03_LYCSI (B6DD21), 
TXD04_LYCSI (B6DD22), TXD05_LYCSI (B6DD23), TXD06_LYCSI (B6DD24), 
TXD07_LYCSI (B6DD25), TXD08_LYCSI (B6DD26), TXD09_LYCSI (B6DD27), 
TXD10_LYCSI (B6DD28)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1HYK; 1Y7J; 1Y7K; 2IQV; 2IQW; 2KZA;

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