ScanProsite tool
ScanProsite
Sequence(s) to be scanned: Motif(s) to scan for:
Enter: Enter:
  • PROSITE AC and/or ID ( e.g. PS50240, e.g. CHEB, e.g. PS50110 and not PS50043)
  • your own pattern(s) ( e.g. K-L-x(1,2)-S-N-K)
  • or nothing to scan against all PROSITE motifs
    (only against defined sequences or against a user database)
     
     
 Exclude patterns with a high probability of occurrence
 Do not scan profiles 		     
     
Protein database(s):
  •  UniProtKB/Swiss-Prot   including splice variants 
     UniProtKB/TrEMBL 
     PDB
     User database code [submit fasta db]
  • randomize databases
    •  excluding fragments
Filter(s):
  • On taxonomy:    (e.g. Homo sapiens, e.g. Fungi; Arthropoda)
  • On description: (e.g. protease)
  • On length >= than:
  • On length <= than:
  • On Tissue expression (Bgee data):   beta
    (only on Human, Xenopus, Mouse and Zebrafish; adult stage)
Pattern option(s):
  • Allow at most X sequence characters to match a conserved position in the pattern
  • Match mode 
Output:
 Show low level score
Retrieve complete sequences
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