{PDOC00588}
{PS00709; RIBOSOMAL_L30E_1}
{PS00993; RIBOSOMAL_L30E_2}
{BEGIN}
*************************************
* Ribosomal protein L30e signatures *
*************************************

A number of eukaryotic  and  archaebacterial ribosomal proteins can be grouped
on the basis of sequence similarities. One of these families consists of:

 - Mammalian L30 [1].
 - Leishmania major L30.
 - Yeast YL32 [2].
 - Bacillus subtilis hypothetical protein ybxF.
 - Thermococcus celer L30 [3].
 - A probable ribosomal protein (ORF 1) from Methanococcus vannielii [4].
 - A probable ribosomal protein (ORF 104) from Sulfolobus acidocaldarius [5].

These proteins  have  82 to 114 amino-acid residues. As signature patterns, we
selected  two conserved regions; one located  in  the  N-terminal  region, the
other in the C-terminal.

-Consensus pattern: [STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-
                    [GS]-x(2)-[KQ]-x-[LIVM](3)
-Sequences known to belong to this class detected by the pattern: ALL.
-Other sequence(s) detected in Swiss-Prot: NONE.

-Consensus pattern: [DE]-[LM]-G-[STALPD]-x(2)-[GK]-[KR]-x(6)-[LIVM]-x-[LIVM]-
                    x-[DEN]-x-[GI]
-Sequences known to belong to this class detected by the pattern: ALL,  except
 for Bacillus subtilis ybxF.
-Other sequence(s) detected in Swiss-Prot: NONE.

-Last update: April 2006 / Pattern revised.

[ 1] Nakanishi O., Oyanagi M., Kuwano Y., Tanaka T., Nakayama T.,
     Mitsui H., Nabeshima Y., Ogata K.
     "Molecular cloning and nucleotide sequences of cDNAs specific for rat
     liver ribosomal proteins S17 and L30."
     Gene 35:289-296(1985).
     PubMed=3840111
[ 2] Dabeva M.D., Warner J.R.
     "The yeast ribosomal protein L32 and its gene."
     J. Biol. Chem. 262:16055-16059(1987).
     PubMed=3316213
[ 3] Klenk H.-P., Schwass V., Zillig W.
     "Nucleotide sequence of the genes encoding the L30, S12 and S7
     equivalent ribosomal proteins from the archaeum Thermococcus celer."
     Nucleic Acids Res. 19:6047-6047(1991).
     PubMed=1840672
[ 4] Lechner K., Heller G., Boeck A.
     "Organization and nucleotide sequence of a transcriptional unit of
     Methanococcus vannielii comprising genes for protein synthesis
     elongation factors and ribosomal proteins."
     J. Mol. Evol. 29:20-27(1989).
     PubMed=2475640
[ 5] Puehler G., Lottspeich F., Zillig W.
     Nucleic Acids Res. 17:4517-4534(1989).

--------------------------------------------------------------------------------
PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and
distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives
(CC BY-NC-ND 4.0) License, see https://prosite.expasy.org/prosite_license.html
--------------------------------------------------------------------------------

{END}