{PDOC00610} {PS00750; TCP1_1} {PS00751; TCP1_2} {PS00995; TCP1_3} {BEGIN} ******************************** * Chaperonins TCP-1 signatures * ******************************** The TCP-1 protein [1,2] (Tailless Complex Polypeptide 1) was first identified in mice where it is especially abundant in testis but present in all cell types. It has since been found and characterized in many other mammalian species, in Drosophila and in yeast. TCP-1 is a highly conserved protein of about 60 Kd (556 to 560 residues) which participates in a hetero-oligomeric 900 Kd double-torus shaped particle [3] with 6 to 8 other different subunits. These subunits, the chaperonin containing TCP-1 (CCT) subunit beta, gamma, delta, epsilon, zeta and eta are evolutionary related to TCP-1 itself [4,5]. The CCT is known to act as a molecular chaperone for tubulin, actin and probably some other proteins. The CCT subunits are highly related to archebacterial counterparts: - TF55 and TF56 [6], a molecular chaperone from Sulfolobus shibatae. TF55 has ATPase activity, is known to bind unfolded polypeptides and forms a oligomeric complex of two stacked nine-membered rings. - Thermosome [7], from Thermoplasma acidophilum. The thermosome is composed of two subunits (alpha and beta) and also seems to be a chaperone with ATPase activity. It forms an oligomeric complex of eight-membered rings. The TCP-1 family of proteins are weakly, but significantly [8], related to the cpn60/groEL chaperonin family (see ). As signature patterns of this family of chaperonins, we chose three conserved regions located in the N-terminal domain. -Consensus pattern: [RKEL]-[ST]-x-[LMFY]-G-P-x-[GSA]-x-x-K-[LIVMF](2) -Sequences known to belong to this class detected by the pattern: ALL, except for 3 sequences. -Other sequence(s) detected in Swiss-Prot: NONE. -Consensus pattern: [LIVM]-[TS]-[NK]-[DN]-[GA]-[AVNHK]-[TAVC]-[LIVM](2)-x(2)- [LIVMA]-x-[LIVM]-x-[SNH]-[PQHA] -Sequences known to belong to this class detected by the pattern: ALL, except for 2 sequences. -Other sequence(s) detected in Swiss-Prot: NONE. -Consensus pattern: Q-[DEK]-x-x-[LIVMGTA]-[GA]-D-G-T -Sequences known to belong to this class detected by the pattern: ALL, except for 2 sequences. -Other sequence(s) detected in Swiss-Prot: 2. -Expert(s) to contact by email: Willison K.R.; willison@icr.ac.uk -Last update: December 2004 / Pattern and text revised. [ 1] Ellis J. "Protein folding. Cytosolic chaperonin confirmed." Nature 358:191-191(1992). PubMed=1352857; DOI=10.1038/358191a0 [ 2] Nelson R.J., Craig E.A. "TCP1 - molecular chaperonin of the cytoplasm?" Curr. Biol. 2:487-489(1992). PubMed=15335898 [ 3] Lewis V.A., Hynes G.M., Zheng D., Saibil H., Willison K.R. "T-complex polypeptide-1 is a subunit of a heteromeric particle in the eukaryotic cytosol." Nature 358:249-252(1992). PubMed=1630492; DOI=10.1038/358249a0 [ 4] Kubota H., Hynes G., Carne A., Ashworth A., Willison K.R. "Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin." Curr. Biol. 4:89-99(1994). PubMed=7953530 [ 5] Kim S., Willison K.R., Horwich A.L. "Cystosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains." Trends Biochem. Sci. 19:543-548(1994). PubMed=7846767 [ 6] Trent J.D., Nimmesgern E., Wall J.S., Hartl F.U., Horwich A.L. "A molecular chaperone from a thermophilic archaebacterium is related to the eukaryotic protein t-complex polypeptide-1." Nature 354:490-493(1991). PubMed=1836250; DOI=10.1038/354490a0 [ 7] Waldmann T., Lupas A., Kellermann J., Peters J., Baumeister W. "Primary structure of the thermosome from Thermoplasma acidophilum." Biol. Chem. Hoppe-Seyler 376:119-126(1995). PubMed=7794526 [ 8] Hemmingsen S.M. "What is a chaperonin?" Nature 357:650-650(1992). PubMed=1352040; DOI=10.1038/357650b0 -------------------------------------------------------------------------------- PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see https://prosite.expasy.org/prosite_license.html -------------------------------------------------------------------------------- {END}