ID HTH_LYSR; MATRIX. AC PS50931; DT 01-OCT-2003 CREATED; 26-FEB-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE. DE LysR-type HTH domain profile. MA /GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=58; MA /DISJOINT: DEFINITION=PROTECT; N1=1; N2=58; MA /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7633278; R2=0.0002840; TEXT='NScore'; MA /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=265878.4062500; R2=1.5322067; PRIORITY=1; TEXT='Heuristic 5.0%'; MA /CUT_OFF: LEVEL=0; SCORE=21961; H_SCORE=299527; N_SCORE=9.0; MODE=1; TEXT='!'; MA /CUT_OFF: LEVEL=-1; SCORE=13158; H_SCORE=286039; N_SCORE=6.5; MODE=1; TEXT='?'; MA /DEFAULT: B1=*; E1=*; MM=*; II=*; MA /I: B1=-8455; E0=*; BM=-16; BD=-6539; MA /M: SY='M'; M=-3996,-3833,-735,-1625,-242,-5537,-1036,1265,-5253,827,3811,-1947,1077,-1909,-2208,-4619,-1284,-6,733,-1441; M0=-1664; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='D'; M=-3712,-5185,2215,844,-5506,-1629,-3344,-1246,740,-564,-4274,1476,-174,-1316,-261,-447,1026,-2299,-5368,-1508; M0=-1036; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-1484,-3826,-6340,-1558,1274,-5546,-4417,877,-5300,2247,-89,-1852,-486,-1845,-5102,-365,-89,-776,966,518; M0=-1594; MA /I: MM=-37; MI=-11690; MD=-5326; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-226,-5151,371,-97,-5472,-2435,22,-2186,959,-5167,-4240,1851,-1991,519,2514,-658,-76,-4773,-5334,-1582; M0=-1476; MA /I: MM=-1; MI=-11654; MD=-12696; IM=-894; II=-1115; DM=-2055; DD=-397; MA /M: SY='H'; M=-197,-660,1143,-1042,-5409,-1541,2877,-2331,-448,588,-4202,-3307,-4757,2476,-528,-393,-3622,-1527,1357,-1395; M0=-1173; MA /I: MM=-1; MI=-11654; MD=-12696; IM=-894; II=-1115; DM=-235; DD=-2732; MA /M: SY='L'; M=-2448,-533,-8446,-7824,145,-7853,-6641,521,-7495,2975,1494,-7523,-7489,-6727,-7162,-7019,-5982,-1509,766,-5845; M0=-4396; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-996,-5182,-1794,731,-5501,-4687,921,-1335,1478,-2841,731,-972,-4780,877,2327,-612,-1332,587,-5366,-6; M0=-1248; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Y'; M=1456,-657,-1544,-5703,-3780,-5546,-4417,1452,-5299,-23,42,-1803,-5596,-4923,-2067,-1653,1446,1388,-4284,1738; M0=-1815; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='F'; M=-2680,-5249,-7892,-7302,3966,-7235,-5928,-635,-6948,1288,-3446,-6859,-2109,-6356,-6683,-6371,-5476,-494,-5402,-490; M0=-3954; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='V'; M=-188,806,547,86,-4769,-4886,877,886,-370,331,6,-622,-4971,-705,-579,-1400,-3728,2091,-137,-1324; M0=-970; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2393,235,-1860,741,-5334,-4722,0,-1370,714,-1429,-806,-3380,-1993,-154,-1373,-1482,764,-17,-363,-4633; M0=-1142; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='V'; M=14,-5384,-8527,-8164,-1604,-8293,-8014,1477,-8077,1619,-4563,-7948,-8036,-7903,-8150,-7623,-2392,2792,-7413,-7004; M0=-4540; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2312,258,-2278,-861,-3898,-2610,599,-635,-2227,-294,1819,-1238,-5477,-4491,-4785,103,-3904,1260,-4372,410; M0=-1404; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=-914,-5185,957,2378,-5506,-2366,-912,-5257,1170,-2897,-4274,-1648,-4779,817,1824,-1206,-478,-2479,-5368,-4686; M0=-1643; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='H'; M=-298,387,-1935,1595,-971,-2401,2154,-2314,-84,-149,-4267,-412,-4781,429,-135,287,1431,-1580,-5362,-326; M0=-747; MA /I: MM=-81; MI=-4198; MD=-12732; IM=-37; II=-5305; DM=-701; DD=-1378; MA /M: SY='G'; M=-1535,-5184,-3566,-654,-921,2724,334,-5252,425,-225,-4274,258,-4784,430,1251,-2204,-3655,-4805,-5368,-1519; M0=-1616; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='S'; M=-4288,-5737,-3867,-1932,-6091,-1665,1557,-5820,-1455,-5733,-4841,2240,-5265,-1509,-1926,3019,-763,-5382,-5866,-5221; M0=-2881; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='F'; M=-1635,-3836,-6356,-5720,3484,-5558,-4430,1228,-5315,517,1014,-5205,-2060,-1556,-5115,-4643,-2048,874,-4294,113; M0=-2508; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='T'; M=202,-5177,-3563,-615,-5494,154,-50,-1320,-652,-2840,-4267,63,-4781,-1403,343,1708,2409,-2297,-5362,-1486; M0=-1270; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=1563,-5180,-3562,304,-5499,-631,-129,-1381,1230,-1533,-4270,-321,-4780,397,2395,-1150,-3652,-1360,-5365,-1541; M0=-1269; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=3453,-5291,-8103,-8454,-8029,-1497,-7372,-7853,-8062,-8117,-7138,-6428,-2058,-7479,-7647,-2563,270,-256,-8252,-8247; M0=-4886; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=3521,-5293,-8085,-8438,-8038,-782,-7373,-7865,-8061,-8127,-7145,-6426,-6396,-7477,-7648,111,-2103,-6520,-8258,-8254; M0=-5398; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=471,-5185,-351,2188,-5506,-4686,431,-2375,1066,-2038,-4274,-1648,-4779,1557,1502,-948,-1104,-1200,-5368,-4685; M0=-1430; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='M'; M=823,-696,-1813,967,-441,-2445,264,-1451,922,-574,1447,-886,-4783,464,1323,372,-233,-898,-5357,-4679; M0=-663; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-2253,-669,-6332,-1374,-730,-5545,-958,-263,-5295,2902,1239,-1949,-5595,-1844,-2083,-2498,-3939,-250,-4284,-3942; M0=-2213; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='H'; M=-1551,304,-255,-1138,359,1726,2791,-5252,-1572,-2896,-1070,1762,-2026,-625,-1688,-675,-1207,-4803,-5366,1944; M0=-1261; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='M'; M=-4002,362,-6347,-5711,-3782,-5550,-4421,1747,-2386,1681,2472,-5195,-5599,-970,-189,-4634,-75,1514,-4286,-520; M0=-2324; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='S'; M=-454,-5170,-1674,-1734,-5482,-4695,-3356,-5226,-1578,-5183,-1148,-1666,290,-2899,-1867,2633,2315,-650,-5359,-4682; M0=-2055; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=-1481,-5185,-959,-1729,-5505,-1540,-73,-2385,-714,-5200,-4274,-3322,1733,3849,-877,-1993,-2009,-1585,-5368,-4686; M0=-1993; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='P'; M=257,-5293,-8012,-8341,-8016,-1556,-7341,-7839,-8002,-8100,-7123,-6409,3227,-844,-7617,2332,-1185,-2263,-8237,-8222; M0=-4442; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2680,-3942,-6228,-5625,-860,-1071,-4500,-3488,-5266,-2554,625,-62,-102,-4925,-5138,123,1802,-1276,-4442,-4096; M0=-2125; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='V'; M=-627,-5722,-8832,-8411,-147,-8604,-7989,1807,-8293,1380,749,-8273,-8140,-7725,-8169,-7942,-6190,2722,-6978,-6880; M0=-4729; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='S'; M=-1077,-5340,-7223,-7430,-7973,-1426,116,-7790,-7325,-8014,-7057,-1748,-6377,-6983,-1964,3296,1620,-6514,-8147,-8047; M0=-4471; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-195,-5120,-3595,-1908,-983,-1071,1164,-2055,1588,-1541,830,-461,-4797,1630,2419,-1284,-1223,-2298,-5322,397; M0=-1082; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=1002,-4758,-3860,-1944,-4913,-1668,2355,-1360,-1904,-1496,-96,-3573,-4923,2425,2028,-122,-153,-2170,-331,-341; M0=-1304; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='I'; M=-6480,-5915,-9090,-8688,-5210,-8980,-8421,3029,-8621,1626,1115,-8661,-8345,-7905,-8457,-8395,-6422,1549,-7088,-7102; M0=-5546; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=1476,-5186,-1841,-3012,-5508,-840,591,-5258,1698,-5202,-229,-893,-4780,1616,1828,582,-718,-4808,-5369,-4687; M0=-1872; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=1187,-5184,348,75,-1755,-2461,-912,-2355,-61,-1534,-199,522,-4779,1847,2151,-1500,-23,-2171,-5368,-4685; M0=-1017; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-7411,-6732,-9767,-9160,171,-9658,-8133,434,-8982,3157,600,-9398,-8453,-7557,-8361,-9103,-7216,-5072,-1076,-6744; M0=-6017; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=-6820,-7489,-5942,3777,-8437,-6928,-5184,-7815,-2194,-7406,-6798,-5657,-7066,-4793,1154,-6622,-6541,-7576,-7154,-7091; M0=-5487; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=-112,-5185,939,1853,-5506,-531,-876,-2927,1042,-5201,-4274,297,-4779,1845,644,-535,141,-2595,-5368,-4685; M0=-1434; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=28,-781,1213,1572,-5479,-1000,531,-1381,-189,-934,-520,-3329,-4784,1729,190,63,-1261,-1594,794,827; M0=-760; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-1487,-3846,-6366,-2397,2229,-5569,-4440,641,-5325,2546,-818,-5215,-5617,-4946,-5125,-4654,-1303,-59,-117,-1246; M0=-2550; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='G'; M=-766,-5592,867,-1955,-5904,3053,-951,-5665,-430,-5604,-4692,1216,-5090,748,-2487,-1458,-4035,-5211,-5772,-5065; M0=-2473; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='V'; M=-502,1970,1151,-1238,-4576,-1063,-3676,975,-1169,-324,-3654,-3804,-5047,120,-516,-2252,534,2152,-4843,-1278; M0=-1029; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=-250,-5185,48,436,-5506,-4686,-3344,-5257,927,-2113,-1161,-887,1806,1846,1402,-1103,231,8,-5368,-4685; M0=-1256; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-7323,-6659,-9715,-9125,-4657,-9607,-8193,-298,-8959,3289,-820,-9351,-8447,-7581,-8371,-9052,-7145,-1346,-6543,-6827; M0=-6080; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='F'; M=-2749,-6152,-9009,-8412,3891,-8578,-7289,-496,-8142,1494,-967,-8258,-7958,-7164,-7733,-7820,-6509,-259,-6209,-1282; M0=-4837; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=-1107,-5053,850,1474,-1885,-4726,986,909,-1034,-1475,-1163,292,-4818,209,-903,-1472,624,1355,-341,109; M0=-829; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-1906,-6192,-6771,-5495,-6617,-6555,-720,-2148,-582,-6055,-913,-5371,-2044,-4259,4052,-2370,-5537,-2399,-6179,-5991; M0=-3657; MA /I: MM=-16; MI=-11690; MD=-6514; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='T'; M=-651,-5170,469,-443,-5491,-850,889,-2242,537,-2146,-4259,-1140,-1974,428,288,1086,2206,-260,-5353,-1705; M0=-850; MA /I: MM=-14; MI=-11674; MD=-6692; IM=-894; II=-1115; DM=-376; DD=-2124; MA /M: SY='G'; M=-1590,-5172,-472,-1647,-5494,2045,984,-5244,-1109,-5189,-4262,534,170,-91,1046,495,1620,-2335,-5356,-4673; M0=-1508; MA /I: MM=-1; MI=-11676; MD=-12718; IM=-894; II=-1115; DM=-399; DD=-2048; MA /M: SY='R'; M=-1404,-5185,-1934,-1120,-1985,-54,1183,-5257,1105,-5201,-4274,563,-1094,132,3168,-1432,-446,-4807,-5368,-4686; M0=-1767; MA /I: MM=-62; MI=-5621; MD=-5530; IM=-93; II=-3998; DM=-701; DD=-1378; MA /M: SY='G'; M=-1462,-5157,-1924,-630,-5478,2286,1739,-5228,260,-5173,-4246,364,-617,557,1790,-139,-660,-4779,-5340,-4657; M0=-1710; MA /I: MM=-1; MI=-11658; MD=-12701; IM=-894; II=-1115; DM=-258; DD=-2610; MA /M: SY='M'; M=-799,285,-6344,-5708,-1632,-2480,-4418,1337,-2346,1777,1968,-5192,-2021,-738,-1435,-2463,-1834,1882,56,-3941; M0=-1663; MA /I: MM=-17; MI=-11690; MD=-6429; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-724,301,-1805,790,-1961,-1876,-28,-252,251,-781,1128,-2168,-4780,915,1384,-126,1329,634,-5309,-4643; M0=-682; MA /I: MM=-1; MI=-11673; MD=-12715; IM=-894; II=-1115; DM=-366; DD=-2160; MA /M: SY='L'; M=-354,-3835,-6354,-5718,810,-1073,-4428,-1195,-5313,2315,-887,-5203,2314,-1819,-5113,-4642,-1699,-414,-4293,-3951; M0=-2218; MA /I: MM=-1; MI=-11690; MD=-12732; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='T'; M=-4623,-5017,-2077,-6185,-5932,-5601,-5908,-5470,-6466,-1372,-1089,-427,-6200,-6044,-6476,-66,3829,-2412,-6373,-6045; M0=-3662; MA /I: B0=*; E1=-1000; CC /MATRIX_TYPE=protein_domain; CC /SCALING_DB=window20; CC /AUTHOR=PS_Langendijk_Genevaux; CC /FT_KEY=DOMAIN; /FT_DESC=HTH lysR-type; CC /VERSION=6; PR PRU00253; DO PDOC00043; //