ID HTH_PSQ; MATRIX. AC PS50960; DT 01-FEB-2004 CREATED; 01-OCT-2013 DATA UPDATE; 24-JAN-2024 INFO UPDATE. DE Psq-type HTH domain profile. MA /GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=53; MA /DISJOINT: DEFINITION=PROTECT; N1=1; N2=53; MA /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0544367; R2=0.0002543; TEXT='NScore'; MA /CUT_OFF: LEVEL=0; SCORE=44615; N_SCORE=14.4; MODE=1; TEXT='R'; MA /CUT_OFF: LEVEL=-1; SCORE=13943; N_SCORE=6.6; MODE=1; TEXT='R?'; MA /DEFAULT: B1=*; E1=*; MM=*; II=*; MA /I: B1=-8455; E0=*; BM=-44; BD=-5044; MA /M: SY='M'; M=316,-3779,-583,-470,-482,-946,-1979,-3827,710,-603,2002,428,1450,-1524,916,295,-499,-154,-3971,-3297; M0=-512; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='P'; M=-814,-3782,-2224,-1675,-4089,983,-1996,-3826,1282,-3793,-2879,952,1646,-1543,1313,669,-2296,336,-3977,-1; M0=-1041; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-214,-3781,-2200,1233,-369,258,326,-1346,2021,-3791,-2874,-1960,-3412,-1524,1389,-99,688,-1040,-3972,-3298; M0=-926; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-2338,-3803,34,-833,-4121,342,1213,-1045,1308,-3818,1127,550,-3406,-1513,2138,168,257,-1050,1061,-3308; M0=-950; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-791,-3858,-2257,-1703,-4185,1547,327,-3928,2242,-3870,-2950,527,-3462,-1559,1977,-742,-730,-3484,-4033,0; M0=-1414; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-1355,-3801,-2189,181,-679,21,595,-1044,1876,-1894,-2892,-1950,1761,-444,1741,-376,-548,-3421,-3987,-3307; M0=-845; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-2557,-2598,-3945,-3354,-2578,-3965,-2766,-435,-27,133,-1792,-3252,1272,-2898,2787,-247,-459,-510,-3031,1881; M0=-1266; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-3141,-4406,-3129,-2461,-4827,-4039,533,-4469,2317,-4358,-3509,926,-4092,-13,1871,-3029,1064,1141,1681,-3940; M0=-1955; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=890,-3807,-440,-704,-420,-945,-1971,-928,-131,-3822,-2896,-121,-618,1802,-330,1559,212,281,-3991,-3309; M0=-671; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='W'; M=-2608,-2437,-4924,-982,-237,-4151,-3009,245,-3890,1770,-1633,-3786,-4201,-317,-600,-3235,-2548,-713,3791,2723; M0=-1727; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='T'; M=-972,-3844,81,-391,-4162,-995,-2011,-3911,-1599,-1457,-2938,538,-3441,-1554,-408,1439,2895,-3465,-4032,-3349; M0=-1309; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-2340,-3791,33,1287,-512,-3317,-240,-125,-737,1723,-2882,-236,1255,-143,644,-1329,-2279,-3408,-3979,-3302; M0=-895; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=544,-3826,1342,2462,-4146,-3321,-1983,-3897,715,-3842,-2915,1008,-587,-1523,-950,-2231,216,-3448,-4009,-120; M0=-1368; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=-727,-3799,1760,2378,-418,-3314,-1973,-909,-318,-1553,267,348,-3407,753,-2062,52,-573,-3418,-3986,-3306; M0=-1010; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-3540,-3460,-5391,-4469,687,-4898,-3426,-2691,2843,1412,2591,-4191,-4868,-3431,-642,-4043,-666,-2797,-3756,-3481; M0=-2343; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='M'; M=844,-3328,233,317,-3470,-3471,-2160,1425,-407,572,2185,-853,-3557,376,-2316,-778,-578,423,-3631,-3078; M0=-749; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=1122,645,240,1953,-4139,-3317,-156,-3889,1060,-3833,-2906,-104,-3410,1591,1359,-2224,-2283,-3439,-4000,-3317; M0=-1465; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2937,-3890,-7059,-6734,-4551,-6759,-6754,1294,-6673,-3347,401,-6488,-6581,-6589,-6800,-6114,-4368,1829,-6203,-5710; M0=-4137; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='I'; M=-1079,809,-7032,-6670,-4362,-6785,-6517,3027,-6581,1846,-3108,-6446,-6543,-6420,-6658,-6112,-4363,882,-5941,-5519; M0=-3871; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=437,-3810,53,1610,-487,-1082,566,-3882,600,-1100,-2899,-285,-3404,1583,1559,-411,-620,-3432,-3994,-3311; M0=-848; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=1993,827,463,-555,-3898,-3357,531,-3601,-1637,-76,-487,-2024,-3449,636,1643,200,-2293,-1687,-3874,-108; M0=-976; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='V'; M=-2586,911,-4931,-4295,-251,-4134,379,1799,-3890,469,-1615,-3779,-4184,-412,-3690,-1065,-2527,2527,-2869,1374; M0=-1753; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-2338,-3810,1375,1649,-4130,-3312,624,-3880,268,-619,334,-1947,-3405,440,1830,2,432,-3431,1139,-3311; M0=-1136; MA /I: MM=-46; MI=-10161; MD=-5045; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='N'; M=124,-3774,287,679,-4095,186,-1933,-1010,387,-3790,-2863,1854,-3368,-1474,1234,1321,-39,-3396,-3958,-3275; M0=-1011; MA /I: MM=-2; MI=-10118; MD=-11160; IM=-894; II=-1115; DM=-383; DD=-2100; MA /M: SY='G'; M=-2354,-3822,-814,660,-4141,2824,327,-3890,805,-1618,-2913,300,-3419,-1527,-2077,-783,-597,-1126,-4007,-3325; M0=-1252; MA /I: MM=-243; MI=-10161; MD=-2700; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-2142,-3616,-437,1473,-3937,1341,-1774,-3688,1964,-3632,-2705,414,289,326,557,-526,-888,-3238,-3799,-3116; M0=-1132; MA /I: MM=-547; MI=-9921; MD=-1668; IM=-894; II=-1115; DM=-134; DD=-3496; MA /M: SY='M'; M=-2248,-2076,-4563,224,-200,-3797,-2669,1242,-580,1163,3674,-3433,-3844,-3161,-3345,-2882,-125,442,-2537,-2197; M0=-1462; MA /I: MM=-3; MI=-9715; MD=-10757; IM=-894; II=-1115; DM=-84; DD=-4140; MA /M: SY='S'; M=-2339,-3805,-396,-384,-4124,-206,-1973,-3872,254,-3820,197,-1950,-724,-1514,240,2651,1037,-1125,-3990,-3309; M0=-1223; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-91,-2447,-4630,-4013,702,-4087,-2943,-372,1484,401,647,-3635,-250,1071,178,-3159,158,1307,-2900,789; M0=-1015; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='S'; M=876,756,-2188,-1639,-4122,-1082,712,-3871,1355,-1548,266,1080,-1090,838,819,1393,-746,-3425,-3989,-3308; M0=-897; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='Q'; M=-203,-3811,240,1002,-4133,-1310,1347,-3883,1901,-3827,-2901,-1947,-3405,1947,685,722,-504,-3433,-3995,-3312; M0=-1267; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2551,-3921,-7103,-6771,-4497,-6898,-6826,1932,-6720,45,-3208,-6570,-6646,-6618,-6850,-6259,-4412,1823,-6196,-5729; M0=-3940; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='A'; M=2713,1859,-6151,-6197,-5921,514,-5418,-5645,-5895,-5925,1352,-4741,-4822,-338,-5705,1716,-3576,-4686,-6207,-6053; M0=-3424; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=489,-3812,-513,-1638,-4133,-1763,-1972,-3884,1530,-3828,-2901,583,-3406,1101,2740,-273,-1121,-1073,-3995,-3313; M0=-1316; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='E'; M=387,-3633,248,1637,-1154,-3362,-2030,963,752,-108,1314,-372,-3453,-1599,1297,-2276,-749,-3214,-3864,-755; M0=-792; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='F'; M=-5919,-5209,-6955,-7045,3573,-6680,640,-699,-6589,670,-4395,-5514,-6575,-5563,-243,-5882,-5809,-5009,-2531,2914; M0=-3954; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='G'; M=-3680,-5361,391,-537,-5614,3058,501,-5439,-601,-5348,-4523,1717,-4412,-176,-3676,-929,-3678,-4956,-5526,-4689; M0=-2502; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='I'; M=-4470,2775,-7166,-6853,-4574,-7034,-7098,2898,-6834,399,-3256,-6688,-6741,-6774,-7008,-6424,-4460,2297,-6384,-5890; M0=-4318; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='P'; M=-916,705,-418,-1734,-3912,-241,-2032,-3616,-415,-1495,-2767,-229,3171,-1598,-2138,990,-626,-3243,1062,-3247; M0=-1143; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='H'; M=-877,-3785,-2197,141,-417,-1191,1497,-972,1063,-3797,286,-211,131,709,1318,374,-486,-905,978,1409; M0=-553; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='S'; M=-2417,-3896,-569,-530,-4216,360,-2042,-3969,-1634,-3912,-2988,500,243,-36,697,2606,583,-3518,-4079,-3392; M0=-1364; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='T'; M=-3294,-3930,-5183,-5494,-6488,-4128,-5389,-6351,-5546,-6549,-5627,-4606,-4916,1881,-5475,-103,3726,-5095,-6633,-6477; M0=-4117; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='L'; M=-1262,-4298,-7318,-6836,616,-6991,-6133,1725,-6654,2626,-2315,-6665,-6524,-5973,-6439,-6279,-4722,976,-5167,-5116; M0=-3771; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='W'; M=-202,-3667,-2266,284,-3925,-3352,-2018,-1306,175,-1447,-2772,-181,-3444,51,1676,992,-2291,-321,2647,2392; M0=-940; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-2340,-3782,1505,-1651,-392,1000,-1979,-3831,-234,-615,348,-306,-3412,624,1748,-158,610,-3397,-3973,927; M0=-825; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='W'; M=-2615,-2606,-4164,-892,-277,-4046,1452,2566,1005,-2461,-1803,-3391,-4102,-3036,1305,-3094,-2553,-613,2631,1512; M0=-1580; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='C'; M=344,2433,-4924,-4288,-126,-4132,-3003,-1903,-49,1410,1448,-3776,-4182,-3509,-765,-3216,-2525,1981,-2870,994; M0=-1576; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-129,-3825,249,-1651,-4147,-3325,327,-3897,2500,-3840,-2914,1159,-3418,1604,1525,-880,-2292,-3448,-4005,-181; M0=-1506; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='R'; M=-900,-3817,688,746,-4138,530,1341,-3889,1364,-3833,-2906,1648,-3409,-85,1941,-829,-2283,-3439,-4000,-3317; M0=-1288; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=-1144,-3925,-2425,1055,-4249,-3501,-2115,-3966,2392,-216,-3022,-2146,-3585,-350,2099,-2426,252,-82,-4086,-3454; M0=-1359; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='G'; M=242,-3810,-42,1170,-4132,1256,1099,-3882,961,-2233,-2900,843,182,426,-2057,-1326,172,-3432,-3994,862; M0=-849; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='K'; M=5,-3792,-489,203,-4105,368,-1975,1289,1754,-564,258,-236,-3409,1498,-2065,-817,-548,-3410,-3981,-59; M0=-722; MA /I: MM=-2; MI=-10161; MD=-11203; IM=-894; II=-1115; DM=-701; DD=-1378; MA /M: SY='I'; M=-842,932,-1034,-50,573,-4044,-2885,1802,-837,979,1519,-3506,-646,-3197,169,-964,161,338,-2933,-2576; M0=-711; MA /I: B0=*; E1=-1000; NR /RELEASE=2024_01,570830; NR /TOTAL=39(37); /POSITIVE=39(37); /UNKNOWN=0(0); /FALSE_POS=0(0); NR /FALSE_NEG=0; /PARTIAL=0; CC /MATRIX_TYPE=protein_domain; CC /SCALING_DB=window20; CC /AUTHOR=PS_Langendijk_Genevaux; CC /TAXO-RANGE=??E??; /MAX-REPEAT=2; CC /FT_KEY=DOMAIN; /FT_DESC=HTH psq-type; CC /VERSION=4; DR Q9W0K7 , BAB1_DROME , T; Q9W0K4 , BAB2_DROME , T; DR B2RD01 , CENP1_HUMAN, T; P48988 , CENPB_CRIGR, T; DR P07199 , CENPB_HUMAN, T; P27790 , CENPB_MOUSE, T; DR Q9VBW9 , DANR_DROME , T; Q29CW0 , DANR_DROPS , T; DR Q16IB4 , DAN_AEDAE , T; B0X560 , DAN_CULQU , T; DR Q9VBW6 , DAN_DROME , T; Q29CW2 , DAN_DROPS , T; DR Q9Y4A0 , JERKL_HUMAN, T; B2RRL2 , JERKL_MOUSE, T; DR O75564 , JERKY_HUMAN, T; Q60976 , JERKY_MOUSE, T; DR Q5ZJK5 , LCORL_CHICK, T; Q8N3X6 , LCORL_HUMAN, T; DR Q3U285 , LCORL_MOUSE, T; Q96JN0 , LCOR_HUMAN , T; DR Q6ZPI3 , LCOR_MOUSE , T; P14083 , LOV_DROME , T; DR Q95YM8 , MBLK1_APIME, T; G5EGQ5 , MBR1_CAEEL , T; DR Q96MW7 , TIGD1_HUMAN, T; Q4W5G0 , TIGD2_HUMAN, T; DR Q0VBL1 , TIGD2_MOUSE, T; Q6B0B8 , TIGD3_HUMAN, T; DR Q7TM95 , TIGD3_MOUSE, T; Q8IY51 , TIGD4_HUMAN, T; DR Q8BUZ3 , TIGD4_MOUSE, T; G3MY25 , TIGD5_BOVIN, T; DR Q53EQ6 , TIGD5_HUMAN, T; Q499M4 , TIGD5_MOUSE, T; DR B1WC39 , TIGD5_RAT , T; Q17RP2 , TIGD6_HUMAN, T; DR Q6NT04 , TIGD7_HUMAN, T; 3D 1BW6; 1HLV; 2COB; 2ELH; PR PRU00320; DO PDOC50960; //