ID   LYSM; MATRIX.
AC   PS51782;
DT   01-NOV-2015 CREATED; 01-NOV-2015 DATA UPDATE; 27-MAR-2024 INFO UPDATE.
DE   LysM domain profile.
MA   /GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=45;
MA   /DISJOINT: DEFINITION=PROTECT; N1=1; N2=45;
MA   /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9349295; R2=0.0070080; TEXT='-LogE';
MA   /CUT_OFF: LEVEL=0; SCORE=937; N_SCORE=8.5; MODE=1; TEXT='R';
MA   /CUT_OFF: LEVEL=-1; SCORE=652; N_SCORE=6.5; MODE=1; TEXT='RR';
MA   /DEFAULT: M0=-25; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
MA   /I: B1=0; BI=-380; BD=-380;
MA   /M: SY='M'; M=-41,-72,-24,-21,5,-53,14,4,30,6,35,-17,-36,22,-16,35,7,0,-73,-11;
MA   /M: SY='W'; M=-16,-71,-33,10,22,-69,-19,0,-2,-60,-59,-57,-24,-24,-26,19,62,-18,72,31;
MA   /M: SY='Y'; M=-68,-16,-65,-40,-36,-77,95,6,-37,-54,-50,-61,-77,-57,-33,-64,-64,8,-49,104;
MA   /M: SY='T'; M=-57,-69,-20,-11,-65,-49,-20,14,23,-14,-54,10,-10,-58,-21,-18,72,27,-83,-64;
MA   /M: SY='V'; M=-10,-67,-82,-76,-19,-82,-82,30,-74,1,-41,-77,-78,-75,-76,-65,-31,89,-82,-59;
MA   /M: SY='Q'; M=-5,-12,-58,-5,-72,-20,-58,-63,57,-67,-16,-37,-67,62,11,11,4,13,-74,-5;
MA   /M: SY='P'; M=11,-74,-9,8,-34,-25,-59,-70,41,-47,-17,-3,42,25,-4,34,0,-50,-75,-10;
MA   /M: SY='G'; M=-26,-76,0,1,-81,88,-65,-54,-17,-51,-71,-11,-67,5,-34,-33,-64,-78,-76,-74;
MA   /M: SY='D'; M=-64,-80,105,43,-83,-44,-53,-84,-52,-82,-79,-11,-65,-22,-60,-12,-57,-80,-93,-20;
MA   /I: I=-38; MI=0; MD=-97; IM=0; DM=-97;
MA   /M: SY='T'; M=-49,-63,-55,-59,-44,-41,-62,-40,-57,-68,-63,18,-62,-29,-63,68,87,-57,-83,-31;
MA   /M: SY='C'; M=-39,83,-83,-77,-15,-83,-72,12,-77,68,-1,-77,-83,-73,-76,-71,-38,12,-75,-26;
MA   /M: SY='W'; M=-29,-76,-8,-10,12,-13,-60,-67,-59,-67,-15,22,-70,31,-63,39,20,-47,110,42;
MA   /M: SY='S'; M=27,-69,-2,-13,-35,12,-61,-11,-2,-28,-62,-30,-67,-12,8,60,1,-39,-76,-12;
MA   /M: SY='I'; M=-65,-75,-86,-82,14,-88,-80,91,-78,31,0,-78,-77,-75,-80,-74,-59,11,-71,-52;
MA   /M: SY='A'; M=80,-12,-67,-61,-71,-22,-68,-60,-63,-14,-59,-60,-31,-59,-67,41,-49,-6,-77,-69;
MA   /M: SY='D'; M=10,-74,32,16,-71,-32,-32,-24,29,-11,-22,24,-68,22,31,-2,-12,-20,-15,-40;
MA   /M: SY='Q'; M=-24,-76,-14,0,-76,-66,-7,-54,57,-36,-16,11,-66,63,40,17,-2,-70,-77,-64;
MA   /I: I=-36; MI=0; MD=-90; IM=0; DM=-90;
MA   /M: SY='Y'; M=-28,-7,-69,-68,63,-73,44,-19,-20,-36,-53,-15,-42,-8,-63,-4,-33,-60,20,95;
MA   /M: SY='G'; M=-21,-15,-7,-9,-51,78,31,-84,16,-81,-71,35,-33,-35,-43,-34,-62,-79,-78,-70;
MA   /M: SY='I'; M=-17,10,-38,-23,-55,-18,-74,55,-69,6,-6,-43,-72,-68,-73,-5,28,48,-78,-16;
MA   /M: SY='T'; M=-15,-69,12,-20,-19,1,-62,-68,5,-29,-64,-13,33,-21,-37,49,60,-63,-80,-66;
MA   /M: SY='V'; M=-9,-68,-35,-44,-8,-53,-69,14,-16,16,50,-33,-23,-65,-68,-3,30,51,-77,-21;
MA   /M: SY='D'; M=23,-1,50,4,-74,-18,-20,-71,-10,-32,0,35,-67,33,-11,27,2,-67,-82,-30;
MA   /I: I=-36; MI=0; MD=-90; IM=0; DM=-90;
MA   /M: SY='Q'; M=9,-76,56,37,-78,-66,-26,-27,26,-34,-64,1,-65,64,-18,-30,-9,-42,-81,-66;
MA   /M: SY='I'; M=-68,-72,-85,-80,60,-87,-74,66,-78,56,-35,-78,-80,-76,-78,-74,-33,-25,-63,-44;
MA   /M: SY='K'; M=14,-73,-67,-8,-57,-72,-63,26,34,26,27,-63,-71,23,4,-25,-2,-11,22,2;
MA   /M: SY='K'; M=7,-74,-5,20,-9,-50,-56,-74,49,-53,-64,1,-66,44,43,20,1,-69,-75,-63;
MA   /M: SY='W'; M=23,-74,-53,-49,-28,-45,-72,-37,-48,40,6,-75,-76,-32,-30,-39,-29,21,115,17;
MA   /M: SY='N'; M=-42,-67,-38,-58,-74,-52,-45,-33,-50,-77,-66,121,-73,-52,-58,-46,-47,-8,-95,-71;
MA   /I: I=-25; MI=0; MD=-63; IM=0; DM=-63;
MA   /M: SY='N'; M=8,-75,-11,-7,-79,25,31,-76,28,-77,-66,54,40,33,-19,-10,-24,-46,-81,-68;
MA   /M: SY='L'; M=-62,-72,-21,-15,-6,10,-70,45,-45,52,23,-12,-76,-67,-72,-67,-28,12,1,-56;
MA   /M: SY='N'; M=-18,-72,25,-45,-33,-21,-23,19,35,-45,-14,45,-14,-18,-13,27,-7,5,-79,-23;
MA   /M: SY='N'; M=-18,-71,34,-7,-35,-9,-24,-33,-4,-42,-66,62,-9,-14,-5,49,7,-52,-84,-66;
MA   /I: I=-33; MI=0; MD=-84; IM=0; DM=-84;
MA   /M: SY='C'; M=-16,79,14,-29,-22,-62,-79,-79,-55,-25,-19,-10,59,-77,-83,-44,-5,-57,-96,-82; D=-33;
MA   /I: I=-33; DM=-84;
MA   /M: SY='N'; M=-24,-72,33,5,-27,-18,13,-55,-15,-50,-65,62,-19,27,-23,39,5,-52,-79,11;
MA   /M: SY='N'; M=-7,-32,13,-16,-23,-27,11,-61,22,1,-29,66,-42,-12,-4,8,-5,1,-20,-63;
MA   /M: SY='I'; M=-41,-72,-84,-78,-8,-85,-77,72,-77,54,-35,-78,-21,-73,-78,-43,-59,26,-73,-55;
MA   /M: SY='W'; M=-41,-77,-15,-2,35,-45,27,-26,7,-27,-26,-11,-72,48,-8,-16,-2,-17,75,56;
MA   /M: SY='P'; M=42,-71,-69,-63,-32,-65,-70,32,-41,-10,-19,1,64,-21,-70,-3,-18,21,-78,-66;
MA   /M: SY='G'; M=-39,-75,-18,-44,-16,91,-66,-83,-15,-39,-71,16,-69,-63,-36,-34,-64,-79,-74,-71;
MA   /M: SY='Q'; M=-16,-78,30,-5,-27,-68,-51,-42,7,-67,-5,-51,-67,99,-7,-33,15,-69,-69,30;
MA   /M: SY='K'; M=-2,-71,-39,7,-66,-67,-61,-9,40,-39,-58,-28,-11,9,13,29,38,12,-75,12;
MA   /M: SY='L'; M=-45,-73,-82,-78,-20,-84,-67,59,-76,61,-35,-78,-80,-71,-75,-48,-60,7,-63,51;
MA   /M: SY='C'; M=-35,83,4,-60,-60,-73,-65,-13,36,-10,-56,-9,-75,12,-29,-28,0,33,41,22;
MA   /M: SY='I'; M=-30,21,-83,-78,-24,-83,-81,70,-75,13,-14,-76,-34,-74,-78,-41,-31,60,3,-58;
MA   /I: E1=0; IE=-380; DE=-380;
NR   /RELEASE=2024_02,571282;
NR   /TOTAL=284(186); /POSITIVE=284(186); /UNKNOWN=0(0); /FALSE_POS=0(0);
NR   /FALSE_NEG=4; /PARTIAL=0;
CC   /MATRIX_TYPE=protein_domain;
CC   /SCALING_DB=reversed;
CC   /AUTHOR=CJA_Sigrist;
CC   /TAXO-RANGE=?BEP?; /MAX-REPEAT=6;
CC   /FT_KEY=DOMAIN; /FT_DESC=LysM;
CC   /VERSION=1;
DR   Q9CIT4    , ACMA_LACLA , T; P0C2T5    , ACMA_LACLC , T;
DR   A2RHZ5    , ACMA_LACLM , T; P37710    , ALYS_ENTFA , T;
DR   P44493    , AMIB_HAEIN , T; Q8H8C7    , CEBIP_ORYSJ, T;
DR   A8R7E6    , CERK1_ARATH, T; A9TXT1    , CERK1_PHYPA, T;
DR   Q9P403    , CIH1_COLLN , T; Q8GFE2    , CPLR_DESHA , T;
DR   O31852    , CWLS_BACSU , T; A0A0H3C9Q9, DIPM_CAUVN , T;
DR   Q07591    , EAE_CITFR  , T; O31000    , EAE_ECO11  , T;
DR   P19809    , EAE_ECO27  , T; P43261    , EAE_ECO57  , T;
DR   Q2FGW1    , EBPS_STAA3 , T; Q2FYF1    , EBPS_STAA8 , T;
DR   Q2YY76    , EBPS_STAAB , T; Q5HFU2    , EBPS_STAAC , T;
DR   A6QH29    , EBPS_STAAE , T; Q99U09    , EBPS_STAAM , T;
DR   Q7A5I6    , EBPS_STAAN , T; Q6GGT1    , EBPS_STAAR , T;
DR   Q6G983    , EBPS_STAAS , T; Q53630    , EBPS_STAAU , T;
DR   Q8NWM5    , EBPS_STAAW , T; Q5HP65    , EBPS_STAEQ , T;
DR   Q8CP59    , EBPS_STAES , T; Q4L6I5    , EBPS_STAHJ , T;
DR   Q49XT4    , EBPS_STAS1 , T; Q37896    , ENLYS_BPB03, T;
DR   P11187    , ENLYS_BPPH2, T; P07540    , ENLYS_BPPZA, T;
DR   Q03415    , ENP1_LYSSH , T; P9WM38    , ESTR_MYCTO , T;
DR   P9WM39    , ESTR_MYCTU , T; Q6B4J5    , EXSA_BACCE , T;
DR   Q9FZ32    , FB60_ARATH , T; A0A0H2ZC68, FIMV_PSEAB , T;
DR   Q9HZA6    , FIMV_PSEAE , T; P0ADE7    , KBP_ECOL6  , T;
DR   P0ADE6    , KBP_ECOLI  , T; P09805    , KTXA_KLULA , T;
DR   Q2G278    , LDP_STAA8  , T; P44833    , LPPB_HAEIN , T;
DR   P36685    , LPPB_HISSO , T; F4IB81    , LYK3_ARATH , T;
DR   O64825    , LYK4_ARATH , T; O22808    , LYK5_ARATH , T;
DR   Q93ZH0    , LYM1_ARATH , T; O23006    , LYM2_ARATH , T;
DR   Q6NPN4    , LYM3_ARATH , T; Q67UE8    , LYP4_ORYSJ , T;
DR   Q69T51    , LYP6_ORYSJ , T; D4ALG0    , LYSM1_ARTBC, T;
DR   A0JNI1    , LYSM1_BOVIN, T; Q96S90    , LYSM1_HUMAN, T;
DR   Q9N012    , LYSM1_MACFA, T; Q9D0E3    , LYSM1_MOUSE, T;
DR   Q5HZA4    , LYSM1_RAT  , T; Q5PQ30    , LYSM1_XENLA, T;
DR   D4B4P8    , LYSM2_ARTBC, T; Q1JQA8    , LYSM2_BOVIN, T;
DR   Q6DEF4    , LYSM2_DANRE, T; Q8IV50    , LYSM2_HUMAN, T;
DR   Q9D7V2    , LYSM2_MOUSE, T; Q3KPL3    , LYSM2_XENLA, T;
DR   Q3B7I8    , LYSM2_XENTR, T; D4AZ68    , LYSM3_ARTBC, T;
DR   Q5ZKK0    , LYSM3_CHICK, T; Q6IQA2    , LYSM3_DANRE, T;
DR   Q7Z3D4    , LYSM3_HUMAN, T; Q99LE3    , LYSM3_MOUSE, T;
DR   Q5M836    , LYSM3_RAT  , T; Q28DG6    , LYSM3_XENTR, T;
DR   D4B4Q2    , LYSM4_ARTBC, T; Q6P606    , LYSM4_DANRE, T;
DR   Q5XG99    , LYSM4_HUMAN, T; Q8CC84    , LYSM4_MOUSE, T;
DR   Q5REP3    , LYSM4_PONAB, T; Q6DCC7    , LYSM4_XENLA, T;
DR   D4AVW3    , LYSM5_ARTBC, T; D4AY86    , LYSM6_ARTBC, T;
DR   P54421    , LYTE_BACSU , T; O07532    , LYTF_BACSU , T;
DR   Q9ZNI1    , LYTN_STAA8 , T; Q5HGI5    , LYTN_STAAC , T;
DR   Q99UM3    , LYTN_STAAM , T; Q7A5Y8    , LYTN_STAAN , T;
DR   Q6GHI8    , LYTN_STAAR , T; Q6G9W6    , LYTN_STAAS , T;
DR   Q7A123    , LYTN_STAAW , T; P0AFT0    , MEPM_ECOL6 , T;
DR   P0AFS9    , MEPM_ECOLI , T; P0AFT1    , MEPM_SHIFL , T;
DR   P0AEZ8    , MLTD_ECOL6 , T; P0AEZ7    , MLTD_ECOLI , T;
DR   P39046    , MUR2_ENTHA , T; Q5ZMS4    , NCOA7_CHICK, T;
DR   Q8NI08    , NCOA7_HUMAN, T; Q6DFV7    , NCOA7_MOUSE, T;
DR   P57493    , NLPD_BUCAI , T; P0ADA3    , NLPD_ECOLI , T;
DR   P45682    , NLPD_PSEAE , T; P39700    , NLPD_SALDU , T;
DR   Q56131    , NLPD_SALTI , T; P40827    , NLPD_SALTY , T;
DR   P0ADA4    , NLPD_SHIFL , T; A5PKL1    , OXR1_BOVIN , T;
DR   Q8N573    , OXR1_HUMAN , T; Q4KMM3    , OXR1_MOUSE , T;
DR   Q4V8B0    , OXR1_RAT   , T; B4F6Q9    , OXR1_XENLA , T;
DR   A8KBE0    , OXR1_XENTR , T; Q01835    , P60_LISGR  , T;
DR   Q01836    , P60_LISIN  , T; Q01837    , P60_LISIV  , T;
DR   P21171    , P60_LISMO  , T; Q01838    , P60_LISSE  , T;
DR   Q01839    , P60_LISWE  , T; D4B5F9    , PGDA_ARTBC , T;
DR   O86308    , RPF_MICLU  , T; O32062    , SAFA_BACSU , T;
DR   Q2FJH7    , SLE1_STAA3 , T; Q2G0U9    , SLE1_STAA8 , T;
DR   Q2YVT4    , SLE1_STAAB , T; Q5HIL2    , SLE1_STAAC , T;
DR   Q7A7E0    , SLE1_STAAN , T; Q6GJK9    , SLE1_STAAR , T;
DR   Q6GC24    , SLE1_STAAS , T; P0C1U7    , SLE1_STAAU , T;
DR   Q7A1T4    , SLE1_STAAW , T; Q5HRU2    , SLE1_STAEQ , T;
DR   Q8CMN2    , SLE1_STAES , T; Q4L3C1    , SLE1_STAHJ , T;
DR   Q49UX4    , SLE1_STAS1 , T; P0DPJ9    , SLEL_BACAN , T;
DR   Q9K3E4    , SLEL_BACCE , T; P37531    , SLEL_BACSU , T;
DR   P37963    , SP6D_BACSU , T; P02976    , SPA_STAA8  , T;
DR   A0A0H3K686, SPA_STAAE  , T; P0A015    , SPA_STAAM  , T;
DR   P99134    , SPA_STAAN  , T; P38507    , SPA_STAAU  , T;
DR   Q2G0D4    , SSAAL_STAA8, T; Q831L8    , TAGH_ENTFA , T;
DR   Q9CH26    , TAGH_LACLA , T; P54335    , XKDP_BACSU , T;
DR   P39800    , XLYA_BACSU , T; O34391    , XLYB_BACSU , T;
DR   Q8K9M4    , Y310_BUCAP , T; Q8DVU8    , Y367_STRMU , T;
DR   Q9Z7W1    , Y593_CHLPN , T; Q8Y8L7    , Y880_LISMO , T;
DR   Q9RVY3    , Y888_DEIRA , T; Q54HI1    , Y9443_DICDI, T;
DR   P75954    , YCFS_ECOLI , T; O05495    , YDHD_BACSU , T;
DR   Q8X8V7    , YEEJ_ECO57 , T; P76347    , YEEJ_ECOLI , T;
DR   Q46798    , YGER_ECOLI , T; Q65K99    , YKUD_BACLD , T;
DR   O34816    , YKUD_BACSU , T; Q5WC42    , YKUD_SHOC1 , T;
DR   O31681    , YKVP_BACSU , T; C0H403    , YKZQ_BACSU , T;
DR   Q65J41    , YNEA_BACLD , T; A8FDP8    , YNEA_BACP2 , T;
DR   Q45056    , YNEA_BACSU , T; A7Z553    , YNEA_BACVZ , T;
DR   Q5L0C2    , YNEA_GEOKA , T; A4IMK2    , YNEA_GEOTN , T;
DR   Q92C50    , YNEA_LISIN , T; C1L2L0    , YNEA_LISMC , T;
DR   Q720B8    , YNEA_LISMF , T; B8DG24    , YNEA_LISMH , T;
DR   Q8Y7H6    , YNEA_LISMO , T; A0AIA4    , YNEA_LISW6 , T;
DR   Q5ZNC8    , YNEA_PRIM3 , T; P76193    , YNHG_ECOLI , T;
DR   O34669    , YOCH_BACSU , T; P50731    , YPBE_BACSU , T;
DR   P45932    , YQBP_BACSU , T; P54483    , YQFZ_BACSU , T;
DR   A0A0P0XII1, CERK1_ORYSJ, N; Q6UD73    , LYK3_MEDTR , N;
DR   Q0GXS4    , NFP_MEDTR  , N; D7UPN3    , RLK10_ORYSJ, N;
3D   1E0G; 1Y7M; 2DJP; 2MKX; 2MPW; 2MTZ; 3ZQD; 4A1I; 4A1J; 4A1K; 4A52; 4EBY;
3D   4EBZ; 5JCD; 5JCE; 6XWE; 7AU7; 7PVC; 7VCM; 7VS7; 8I2E;
PR   PRU01118;
DO   PDOC51782;
//