PROSITE entry PS00026
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General information about the entry
| Entry name [info] | CHIT_BIND_I_1 |
| Accession [info] | PS00026 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00025 |
Name and characterization of the entry
| Description [info] | Chitin recognition or binding domain signature. |
| Pattern [info] |
C-x(4,5)-C-C-S-x(2)-G-x-C-G-x(3,4)-[FYW]-C. |
Numerical results [info]
| Total number of hits | 110 in 87 different sequences |
| Number of true positive hits | 107 in 84 different sequences |
| Number of 'unknown' hits | 1 |
| Number of false positive hits | 2 in 2 different sequences |
| Number of false negative sequences | 6 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 98.17 % |
| Recall (true positives / (true positives + false negatives)) | 94.69 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 4 |
| Site [info] | disulfide at position 1 |
| Site [info] | disulfide at position 3 |
| Site [info] | disulfide at position 4 |
| Site [info] | disulfide at position 9 |
| Site [info] | disulfide at position 13 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
84 sequences
AGI1_WHEAT (P10968), AGI2_WHEAT (P02876), AGI3_WHEAT (P10969), AGI_HORVU (P15312), AGI_ORYSI (Q01MB6), AGI_ORYSJ (Q0JF21), AGI_URTDI (P11218), AMP1_FAGES (P0DKH7), AMP1_STEME (E1UYT9), AMP2_FAGES (P0DKH8), AMP2_STEME (E1UYU0), AMP3_STEME (C0HJU5), AMP_AMACA (P27275), AMP_AMARE (Q5I2B2), AMP_IPONI (P81591), CBLE_VISAL (P81859), CDA_PESTX (A0A1L3THR9), CHAL_BRARR (P81729), CHI12_ORYSJ (P25765), CHI1_GOSHI (Q39799), CHI1_HORVU (P11955), CHI1_ORYSJ (Q42993), CHI1_SOLTU (P52403), CHI1_THECC (Q41596), CHI1_TOBAC (P08252), CHI2_BRANA (Q09023), CHI2_GOSHI (Q39785), CHI2_ORYSJ (Q7DNA1), CHI2_PEA(P21226), CHI2_SOLTU (P52404), CHI2_TOBAC (P24091), CHI3_ORYSJ (P24626), CHI3_SOLTU (P52405), CHI3_TOBAC (P29059), CHI4_BRANA (Q06209), CHI4_CRYJA (Q5NTA4), CHI4_ORYSJ (O04138), CHI4_PHAVU (P27054), CHI4_SOLTU (P52406), CHI58_ARATH (O24598), CHI59_ARATH (O24658), CHI5_ARATH (Q9M2U5), CHI5_ORYSJ (Q7Y1Z0), CHI5_PHAVU (P36361), CHI60_ARATH (O24654), CHI61_ARATH (O22842), CHI62_ARATH (O22841), CHI6_ORYSJ (Q6K8R2), CHI6_POPTR (P16579), CHI7_ORYSI (Q9SAY3), CHI7_ORYSJ (Q7Y1Z1), CHI8_POPTR (P16061), CHI9_ORYSJ (Q688M5), CHIA_MAIZE (P29022), CHIA_SECCE (Q9FRV1), CHIB_ARATH (P19171), CHIB_MAIZE (P29023), CHIB_POPTR (P29031), CHIB_VITVI (P51613), CHIC_POPTR (P29032), CHIC_SOLLC (Q05538), CHIP_BETVU (P42820), CHIT_DIOJA (P80052), CHIT_PERAE (P93680), CHIT_PHAVU (P06215), CHIT_SOLTU (P05315), CHIX_PEA(P36907), CHI_ARATH (O24603), EAP1_EUCUL (P83596), EAP2_EUCUL (P83597), HEVE_HEVBR (P02877), HEVL_ARATH (P43082), HEVP_HEVBR (P80359), KTXA_KLULA (P09805), LECB_PHYAM (Q9AVB0), LECC_PHYAM (Q9AYP9), LECT_SOLTU (Q9S8M0), LED2_PHYAM (P83790), LYSM4_ARTBC (D4B4Q2), MLX56_MORAL (A7XQ02), MO1_MOROL (A0A1S6EK91), MO2_MOROL (A0A1S6EK92), WIN1_SOLTU (P09761), WIN2_SOLTU (P09762)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
6 sequences
AMP_LYMAR (P86521), AMP_TRIKH (P85966), CHI1_HEVBR (Q949H3), CHI2_HEVBR (W0IWL0), CHIL_HEVBR (Q8GUD7), CHIT_ACTCC (P86473)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
CHIB_PEA(P21227), CHIT_TRISX (C0HJM6), IAMY_COILA (P15326), IPLAA_MORAL (P86799), IPLAB_MORAL (P86800), LECA_PHYAM (P84282)» more |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
UTR2_CANAL (Q5AJC0) |
| UniProtKB/Swiss-Prot False positive sequences |
2 sequences
CRF2_ASPFU (Q4WI46), CRH2_YEAST (P32623) |
| PDB [Detailed view] |
36 PDB
1EN2; 1ENM; 1HEV; 1IQB; 1K7T; 1K7U; 1K7V; 1MMC; 1P9G; 1P9Z; 1Q9B; 1T0W; 1UHA; 1ULK; 1ULM; 1ULN; 1WGC; 1WGT; 1WKX; 1ZNT; 1ZUV; 1ZWU; 2CWG; 2DKV; 2KUS; 2N1S; 2UVO; 2WGC; 2X3T; 2X52; 3IWR; 4AML; 4WP4; 5WUZ; 7WGA; 9WGA » more |