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| Entry: PS00031 |
General information about the entry
| Entry name [info] | NUCLEAR_REC_DBD_1 |
| Accession [info] | PS00031 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00031 |
Name and characterization of the entry
| Description [info] | Nuclear hormones receptors DNA-binding region signature. |
| Pattern [info] |
C-x(2)-C-x(1,2)-[DENAVSPHKQT]-x(5,6)-[HNY]-[FY]-x(4)-C-x(2)-C-x(2)-F(2)- x-R. |
Numerical results [info]
| Total number of hits | 461 in 461 different sequences |
| Number of true positive hits | 461 in 461 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 10 |
| Number of 'partial' sequences | 9 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.88 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | zinc at position 1 |
| Site [info] | zinc at position 3 |
| Site [info] | zinc at position 10 |
| Site [info] | zinc at position 12 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
461 sequences
7UP1_DROME (P16375 ), 7UP2_DROME (P16376 ), ANDR_CANLF (Q9TT90 ), ANDR_CROCR (Q8MIK0 ), ANDR_EULFC (O97776 ), ANDR_HUMAN (P10275 ), ANDR_LITCT (Q7T1K4 ), ANDR_MACFA (O97952 ), ANDR_MACMU (Q6QT55 ), ANDR_MOUSE (P19091 ), ANDR_PANTR (O97775 ), ANDR_PAPHA (O97960 ), ANDR_PIG (Q9GKL7 ), ANDR_RABIT (P49699 ), ANDR_RAT (P15207 ), CNR14_CAEEL (P41830 ), COT1_BOVIN (Q9TTR8 ), COT1_HUMAN (P10589 ), COT1_MOUSE (Q60632 ), COT2_BOVIN (Q9TTR7 ), COT2_CHICK (Q90733 ), COT2_HUMAN (P24468 ), COT2_MOUSE (P43135 ), COT2_RAT (O09018 ), DAF12_CAEEL (G5EFF5 ), DSF_DROME (Q9VML1 ), E75BB_DROME (P13055 ), E75BC_DROME (P17671 ), E75_CHOFU (O01639 ), E75_GALME (P50239 ), E75_MANSE (Q08893 ), E75_METEN (O77245 ), E78C_DROME (P45447 ), ECR_AEDAE (P49880 ), ECR_BOMMO (P49881 ), ECR_CHITE (P49882 ), ECR_DROME (P34021 ), ECR_HELVI (O18473 ), ECR_LUCCU (O18531 ), ECR_MANSE (P49883 ), EGON_DROME (P15370 ), ERR1_CANLF (Q6QMY5 ), ERR1_HUMAN (P11474 ), ERR1_MOUSE (O08580 ), ERR1_RAT (Q5QJV7 ), ERR2_HUMAN (O95718 ), ERR2_MOUSE (Q61539 ), ERR2_RAT (P11475 ), ERR3_HUMAN (P62508 ), ERR3_MOUSE (P62509 ), ERR3_PONAB (Q5RAM2 ), ERR3_RAT (P62510 ), ESR1_BOVIN (P49884 ), ESR1_CHICK (P06212 ), ESR1_DANRE (P57717 ), ESR1_FELCA (Q53AD2 ), ESR1_HORSE (Q9TV98 ), ESR1_HUMAN (P03372 ), ESR1_ICTPU (Q9YHZ7 ), ESR1_MESAU (Q9QZJ5 ), ESR1_MOUSE (P19785 ), ESR1_ONCMY (P16058 ), ESR1_OREAU (P50240 ), ESR1_ORENI (Q9YH33 ), ESR1_ORYLA (P50241 ), ESR1_PAGMA (O42132 ), ESR1_PIG (Q29040 ), ESR1_RAT (P06211 ), ESR1_SALSA (P50242 ), ESR1_SHEEP (P49885 ), ESR1_SPAAU (Q9PVZ9 ), ESR1_TAEGU (Q91250 ), ESR1_XENLA (P81559 ), ESR21_CARAU (Q9W669 ), ESR22_CARAU (Q9IAL9 ), ESR2_ANGJA (O13012 ), ESR2_BOVIN (Q9XSB5 ), ESR2_CALJA (Q95171 ), ESR2_CHICK (Q9PTU5 ), ESR2_COTJA (O93511 ), ESR2_HUMAN (Q92731 ), ESR2_ICTPU (Q9IAK1 ), ESR2_MICUN (P57781 ), ESR2_MOUSE (O08537 ), ESR2_ONCMY (P57782 ), ESR2_ORENI (Q9YH32 ), ESR2_PIG (Q9XSW2 ), ESR2_RAT (Q62986 ), ESR2_SHEEP (Q9TU15 ), ESR2_SPAAU (Q9W6M2 ), ESR2_STUVU (Q9PVE2 ), ESR3_MICUN (P57783 ), FAX1_CAEEL (G5EDJ0 ), FTF1B_DROME (Q05192 ), FTZF1_BOMMO (P49867 ), FTZF1_DROME (P33244 ), GAG_AVIER (P03373 ), GCNFA_DANRE (Q9PU65 ), GCNFB_DANRE (Q4V8R7 ), GCR_AOTNA (P79686 ), GCR_CALJA (Q6XLJ0 ), GCR_CAVPO (P49115 ), GCR_HUMAN (P04150 ), GCR_MOUSE (P06537 ), GCR_ONCMY (P49843 ), GCR_PAROL (O73673 ), GCR_PIG (Q9N1U3 ), GCR_PONAB (Q5R9P5 ), GCR_RABIT (P59667 ), GCR_RAT (P06536 ), GCR_SAGOE (P79269 ), GCR_SAIBB (O13186 ), GCR_SAISC (O46567 ), GCR_SHEEP (P35547 ), GCR_TUPBE (Q95267 ), GCR_XENLA (P49844 ), HIZR1_CAEEL (G5ED47 ), HNF4A_HUMAN (P41235 ), HNF4A_MOUSE (P49698 ), HNF4A_RAT (P22449 ), HNF4A_XENLA (Q91766 ), HNF4B_XENLA (P79926 ), HNF4G_HUMAN (Q14541 ), HNF4G_MOUSE (Q9WUU6 ), HNF4_DROME (P49866 ), HR38_BOMMO (P49870 ), HR38_DROME (P49869 ), HR3_DROME (P31396 ), HR3_GALME (P49868 ), HR3_MANSE (Q08882 ), HR4_DROME (Q9W539 ), HR78_DROME (Q24142 ), HR96_DROME (Q24143 ), KNIR_DROME (P10734 ), KNIR_DROVI (Q24753 ), KNRL_DROME (P13054 ), MCR_AOTNA (Q3YC04 ), MCR_HUMAN (P08235 ), MCR_MOUSE (Q8VII8 ), MCR_RAT (P22199 ), MCR_SAIBB (Q4JM28 ), MCR_SAISC (Q9N0W8 ), MCR_TUPBE (Q29131 ), MCR_XENLA (Q91573 ), N2C1A_XENLA (Q6GN21 ), N2C1B_XENLA (Q66J63 ), N2F1A_DANRE (Q06725 ), N2F1B_DANRE (Q6PH18 ), NH100_CAEEL (O17611 ), NH103_CAEEL (O16359 ), NH106_CAEEL (O16966 ), NH111_CAEEL (O45521 ), NH114_CAEEL (G5EEM0 ), NH115_CAEEL (O16662 ), NH121_CAEEL (Q9TZ99 ), NH124_CAEEL (O16391 ), NH125_CAEEL (O17082 ), NH127_CAEEL (O18087 ), NH133_CAEEL (O16354 ), NH134_CAEEL (O16361 ), NH136_CAEEL (O01930 ), NH150_CAEEL (O17573 ), NH153_CAEEL (O01929 ), NH154_CAEEL (O01931 ), NH164_CAEEL (O17657 ), NH169_CAEEL (O17706 ), NH174_CAEEL (O17748 ), NH209_CAEEL (Q21806 ), NH217_CAEEL (O02305 ), NH268_CAEEL (O17930 ), NHR10_CAEEL (P41999 ), NHR11_CAEEL (Q23294 ), NHR12_CAEEL (Q21701 ), NHR13_CAEEL (Q9N4Q7 ), NHR14_CAEEL (O02151 ), NHR16_CAEEL (Q27521 ), NHR18_CAEEL (O16360 ), NHR19_CAEEL (Q09528 ), NHR1_CAEEL (Q21878 ), NHR1_ONCVO (Q25604 ), NHR20_CAEEL (Q09565 ), NHR22_CAEEL (Q09587 ), NHR23_CAEEL (P41828 ), NHR25_CAEEL (Q19345 ), NHR28_CAEBR (A8XNK6 ), NHR28_CAEEL (Q17905 ), NHR2_CAEEL (Q10902 ), NHR31_CAEEL (Q18192 ), NHR34_CAEEL (Q21006 ), NHR35_CAEEL (Q17771 ), NHR3_CAEEL (Q9XTJ4 ), NHR40_CAEEL (Q22127 ), NHR41_CAEEL (Q9N4B8 ), NHR42_CAEEL (O76828 ), NHR44_CAEEL (Q22555 ), NHR47_CAEEL (Q17370 ), NHR48_CAEEL (Q94407 ), NHR49_CAEEL (O45666 ), NHR4_CAEEL (O45436 ), NHR52_CAEEL (O17928 ), NHR53_CAEEL (O17933 ), NHR54_CAEEL (O45460 ), NHR55_CAEEL (O16962 ), NHR57_CAEEL (O16425 ), NHR59_CAEEL (Q9TXJ1 ), NHR5_CAEEL (Q9NA51 ), NHR60_CAEEL (O17898 ), NHR61_CAEEL (O62389 ), NHR62_CAEEL (O02279 ), NHR64_CAEEL (O44960 ), NHR65_CAEEL (O45907 ), NHR66_CAEEL (H2KYJ8 ), NHR67_CAEEL (Q9XVV3 ), NHR68_CAEEL (Q9XXM8 ), NHR69_CAEEL (P91829 ), NHR6_CAEEL (P41829 ), NHR71_CAEEL (Q9GTD4 ), NHR76_CAEEL (Q65CM0 ), NHR77_CAEEL (O02316 ), NHR79_CAEEL (O18141 ), NHR7_CAEEL (Q20765 ), NHR80_CAEEL (Q8ITW8 ), NHR85_CAEEL (Q9XUK7 ), NHR86_CAEEL (Q965W2 ), NHR89_CAEEL (O02235 ), NHR8_CAEEL (Q9XYB7 ), NHR90_CAEEL (O17025 ), NHR91_CAEEL (Q9U2R6 ), NHR96_CAEEL (Q95X91 ), NHR97_CAEEL (Q9BJK5 ), NHR98_CAEEL (Q966I0 ), NHR9_CAEEL (Q23489 ), NR1D1_BOVIN (Q08E02 ), NR1D1_HUMAN (P20393 ), NR1D1_MOUSE (Q3UV55 ), NR1D1_RAT (Q63503 ), NR1D1_SHEEP (B3SV56 ), NR1D2_HUMAN (Q14995 ), NR1D2_MOUSE (Q60674 ), NR1D2_RAT (Q63504 ), NR1H2_BOVIN (Q5BIS6 ), NR1H2_HUMAN (P55055 ), NR1H2_MOUSE (Q60644 ), NR1H2_RAT (Q62755 ), NR1H3_BOVIN (Q5E9B6 ), NR1H3_HUMAN (Q13133 ), NR1H3_MOUSE (Q9Z0Y9 ), NR1H3_RAT (Q62685 ), NR1H4_BOVIN (Q3SZL0 ), NR1H4_HUMAN (Q96RI1 ), NR1H4_MOUSE (Q60641 ), NR1H4_RAT (Q62735 ), NR1I2_HUMAN (O75469 ), NR1I2_MACMU (Q8SQ01 ), NR1I2_MOUSE (O54915 ), NR1I2_RAT (Q9R1A7 ), NR1I3_CALUR (P62044 ), NR1I3_HUMAN (Q14994 ), NR1I3_MACMU (Q8MIM3 ), NR1I3_MOUSE (O35627 ), NR1I3_PANTR (A2T7D9 ), NR1I3_PUSSI (P62045 ), NR1I3_RAT (Q9QUS1 ), NR2C1_BOVIN (A0JNE3 ), NR2C1_HUMAN (P13056 ), NR2C1_MACFA (Q95K90 ), NR2C1_MOUSE (Q505F1 ), NR2C1_PONAB (Q5RCZ5 ), NR2C1_RAT (Q8VIJ4 ), NR2C1_XENTR (Q28CK1 ), NR2C2_HUMAN (P49116 ), NR2C2_MOUSE (P49117 ), NR2C2_RAT (P55094 ), NR2E1_CHICK (Q91379 ), NR2E1_HUMAN (Q9Y466 ), NR2E1_MOUSE (Q64104 ), NR2E1_ORYLA (Q9YGL3 ), NR2E1_XENLA (P70052 ), NR2E3_BOVIN (Q9TTF0 ), NR2E3_HUMAN (Q9Y5X4 ), NR2E3_MOUSE (Q9QXZ7 ), NR2F5_DANRE (Q06726 ), NR2F6_HUMAN (P10588 ), NR2F6_MOUSE (P43136 ), NR2F6_RAT (O09017 ), NR4A1_BOVIN (Q0V8F0 ), NR4A1_CANLF (P51666 ), NR4A1_HUMAN (P22736 ), NR4A1_MOUSE (P12813 ), NR4A1_RAT (P22829 ), NR4A1_XENLA (Q04913 ), NR4A2_BOVIN (Q08E53 ), NR4A2_HUMAN (P43354 ), NR4A2_MOUSE (Q06219 ), NR4A2_PONAB (Q5R5Y4 ), NR4A2_RAT (Q07917 ), NR4A2_XENTR (A4IIG7 ), NR4A3_HUMAN (Q92570 ), NR4A3_MOUSE (Q9QZB6 ), NR4A3_RAT (P51179 ), NR5A2_CHICK (O42101 ), NR5A2_HUMAN (O00482 ), NR5A2_MOUSE (P45448 ), NR5A2_RAT (Q9QWM1 ), NR6A1_HUMAN (Q15406 ), NR6A1_MOUSE (Q64249 ), NR6A1_PIG (A0P8Z4 ), NR6A1_XENLA (P70033 ), NR6A1_XENTR (Q66JK1 ), ODR7_CAEEL (P41933 ), PPARA_CANLF (Q95N78 ), PPARA_CAVPO (O35507 ), PPARA_HUMAN (Q07869 ), PPARA_MOUSE (P23204 ), PPARA_PHACI (Q8HYL6 ), PPARA_RAT (P37230 ), PPARA_XENLA (P37232 ), PPARD_CANLF (Q0ZAQ8 ), PPARD_HUMAN (Q03181 ), PPARD_MOUSE (P35396 ), PPARD_XENLA (P37233 ), PPARG_BOVIN (O18971 ), PPARG_CANLF (Q4U3Q4 ), PPARG_CRIGR (P57797 ), PPARG_HUMAN (P37231 ), PPARG_MACMU (O18924 ), PPARG_MOUSE (P37238 ), PPARG_PIG (O62807 ), PPARG_RABIT (O19052 ), PPARG_RAT (O88275 ), PPARG_XENLA (P37234 ), PRGR_ATEPA (A7XW25 ), PRGR_CANLF (Q9GLW0 ), PRGR_CHICK (P07812 ), PRGR_CHLAE (A7X8C9 ), PRGR_COLGU (A7X8D2 ), PRGR_GORGO (A7X8B7 ), PRGR_HUMAN (P06401 ), PRGR_HYLLA (A7X8C2 ), PRGR_MACSY (A7X8C4 ), PRGR_MOUSE (Q00175 ), PRGR_PANPA (A7X8B5 ), PRGR_PANTR (A7X8B3 ), PRGR_PAPAN (A7X8C7 ), PRGR_PITIR (A7XW20 ), PRGR_PONPY (A7X8B9 ), PRGR_RABIT (P06186 ), PRGR_RANDY (Q8AYI2 ), PRGR_RAT (Q63449 ), PRGR_SAPAP (A7XW16 ), PRGR_SHEEP (Q28590 ), PRGR_TRAOB (A7X8D4 ), RARAA_DANRE (Q90271 ), RARAB_DANRE (Q7ZTI3 ), RARA_CANLF (Q5FBR4 ), RARA_CHICK (Q90966 ), RARA_HUMAN (P10276 ), RARA_MOUSE (P11416 ), RARA_NOTVI (P18514 ), RARA_TAKRU (Q9W5Z3 ), RARA_XENLA (P51126 ), RARB_CHICK (P22448 ), RARB_COTJA (Q9W6B3 ), RARB_HUMAN (P10826 ), RARB_MOUSE (P22605 ), RARB_NOTVI (P18515 ), RARGA_DANRE (Q91392 ), RARGB_DANRE (A2T928 ), RARG_HUMAN (P13631 ), RARG_MOUSE (P18911 ), RARG_NOTVI (P18516 ), RARG_XENLA (P28699 ), RORAA_DANRE (F1QLY4 ), RORAB_DANRE (F1QJF4 ), RORA_HUMAN (P35398 ), RORA_MOUSE (P51448 ), RORB_HUMAN (Q92753 ), RORB_MOUSE (Q8R1B8 ), RORB_RAT (P45446 ), RORG_HUMAN (P51449 ), RORG_MOUSE (P51450 ), RORG_PONAB (Q5RAP4 ), RXRAA_DANRE (A2T929 ), RXRAB_DANRE (Q90415 ), RXRA_HUMAN (P19793 ), RXRA_MOUSE (P28700 ), RXRA_RAT (Q05343 ), RXRA_XENLA (P51128 ), RXRBA_DANRE (Q7SYN5 ), RXRBB_DANRE (Q90417 ), RXRB_CANLF (Q5TJF7 ), RXRB_HUMAN (P28702 ), RXRB_MOUSE (P28704 ), RXRB_RAT (P49743 ), RXRGA_DANRE (Q90416 ), RXRGB_DANRE (Q6DHP9 ), RXRG_BOVIN (Q0VC20 ), RXRG_CHICK (P28701 ), RXRG_HUMAN (P48443 ), RXRG_MOUSE (P28705 ), RXRG_PIG (Q0GFF6 ), RXRG_PONAB (Q5REL6 ), RXRG_RAT (Q5BJR8 ), RXRG_XENLA (P51129 ), RXR_BIOGL (Q8T5C6 ), RXR_LYMST (Q5I7G2 ), SHR2_STRPU (Q26622 ), STF1_BOVIN (Q04752 ), STF1_HORSE (Q9GKL2 ), STF1_HUMAN (Q13285 ), STF1_MOUSE (P33242 ), STF1_NOTEU (Q95L87 ), STF1_PIG (P79387 ), STF1_RAT (P50569 ), THAA_DANRE (Q98867 ), THAA_PAROL (Q91241 ), THAA_XENLA (P15204 ), THAB_PAROL (Q91242 ), THAB_XENLA (P18115 ), THA_APTPA (O42295 ), THA_CAIMO (Q90382 ), THA_CHICK (P04625 ), THA_HIPHI (Q9W6N4 ), THA_HUMAN (P10827 ), THA_LITCT (Q02777 ), THA_MOUSE (P63058 ), THA_NECMA (O57606 ), THA_PIG (O97716 ), THA_PYGAD (O42450 ), THA_RAT (P63059 ), THA_SALSA (Q9W785 ), THA_SHEEP (Q28570 ), THBA_XENLA (P18117 ), THBB_XENLA (P18119 ), THB_CAIMO (P68305 ), THB_CHICK (P68306 ), THB_DANRE (Q9PVE4 ), THB_HUMAN (P10828 ), THB_LITCT (Q02965 ), THB_MOUSE (P37242 ), THB_PAROL (Q91279 ), THB_RAT (P18113 ), THB_SHEEP (Q28571 ), TLL_DROME (P18102 ), TLL_DROVI (O16845 ), UNC55_CAEEL (G5ECR9 ), USP_BOMMO (P49700 ), USP_CHOFU (O76202 ), USP_DROME (P20153 ), USP_MANSE (P54779 ), VDRA_DANRE (Q9PTN2 ), VDRB_DANRE (Q1L673 ), VDR_BOVIN (Q28037 ), VDR_CHICK (O42392 ), VDR_COTJA (P49701 ), VDR_HUMAN (P11473 ), VDR_MOUSE (P48281 ), VDR_PIG (A3RGC1 ), VDR_RAT (P13053 ), VDR_SAGOE (Q95MH5 ), VDR_XENLA (O13124 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
10 sequences
NH108_CAEEL (O45449 ), NH130_CAEEL (O16963 ), NH167_CAEEL (O17683 ), NH197_CAEEL (O17931 ), NH199_CAEEL (O17934 ), NH213_CAEEL (O18048 ), NH218_CAEEL (O18086 ), NHR27_CAEEL (G5EGN8 ), NHR43_CAEEL (Q18299 ), NHR51_CAEEL (O17927 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
9 sequences
ESR1_ANOCA (Q9YHT3 ), ESR1_ASPUN (Q91424 ), ESR1_MACMU (P49886 ), ESR1_MICUN (P57753 ), ESR2_MACMU (Q9TTE5 ), PRGR_NOTEU (P79373 ), THA_ELECQ (Q9PUA8 ), THA_ONCMY (Q9W6I9 ), THA_SPAAU (O57568 )» more |
| PDB [Detailed view] |
96 PDB
1A6Y; 1BY4; 1CIT; 1DSZ; 1GA5; 1GDC; 1GLU; 1HCP; 1HCQ; 1HLZ; 1HRA; 1KB2; 1KB4; 1KB6; 1LAT; 1LO1; 1R0N; 1R0O; 1R4I; 1R4O; 1R4R; 1RGD; 1RXR; 1YNW; 2A66; 2C7A; 2EBL; 2ENV; 2FF0; 2GDA; 2HAN; 2NLL; 3CBB; 3DZU; 3DZY; 3E00; 3FYL; 3G6P; 3G6Q; 3G6R; 3G6T; 3G6U; 3G8U; 3G8X; 3G97; 3G99; 3G9I; 3G9J; 3G9M; 3G9O; 3G9P; 3M9E; 4AA6; 4CN2; 4CN3; 4CN5; 4CN7; 4HN5; 4HN6; 4IQR; 4NQA; 4TNT; 4UMM; 5CBX; 5CBY; 5CBZ; 5CC0; 5CC1; 5E69; 5E6A; 5E6B; 5E6C; 5E6D; 5EMC; 5EMP; 5EMQ; 5KRB; 5L0M; 5UAN; 5VA0; 5VA7; 6BQU; 6BSE; 6BSF; 6CFN; 6FBQ; 6FBR; 6FX0; 6L6L; 6L6Q; 6LC1; 6X6D; 6X6E; 6XWG; 6XWH; 7KW7 » more |
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