PROSITE entry PS00034

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General information about the entry

Entry name [info]	PAIRED_1
Accession [info]	PS00034
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-APR-1990 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00034

Name and characterization of the entry

Description [info]	Paired DNA-binding domain signature.
Pattern [info]	R-P-C-x(11)-C-V-S.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	69 in 69 different sequences
Number of true positive hits	62 in 62 different sequences
Number of 'unknown' hits	0
Number of false positive hits	7 in 7 different sequences
Number of false negative sequences	1
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	89.86 %
Recall (true positives / (true positives + false negatives))	98.41 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	62 sequences GSBN_DROME (P09083), GSB_DROME (P09082), PAX1H_CAEEL (Q21272), PAX1_CHICK (P47236), PAX1_HUMAN (P15863), PAX1_MOUSE (P09084), PAX2A_DANRE (Q90268), PAX2A_XENLA (O57685), PAX2B_XENLA (O57682), PAX2H_CAEEL (Q21263), PAX2_HUMAN (Q02962), PAX2_MOUSE (P32114), PAX3A_XENLA (Q645N4), PAX3B_XENLA (Q0IH87), PAX3_HUMAN (P23760), PAX3_MOUSE (P24610), PAX3_XENTR (Q28DP6), PAX4_HUMAN (O43316), PAX4_MOUSE (P32115), PAX4_RAT(O88436), PAX5H_CAEEL (G5ED14), PAX5_HUMAN (Q02548), PAX5_MOUSE (Q02650), PAX5_XENLA (Q9YH95), PAX6_BOVIN (Q1LZF1), PAX6_COTJA (P47238), PAX6_DANRE (P26630), PAX6_DROME (O18381), PAX6_HUMAN (P26367), PAX6_MOUSE (P63015), PAX6_ORYLA (O73917), PAX6_RAT(P63016), PAX6_XENLA (P55864), PAX7_HUMAN (P23759), PAX7_MOUSE (P47239), PAX8_CANLF (P47240), PAX8_HUMAN (Q06710), PAX8_MOUSE (Q00288), PAX8_PONAB (Q5R9M8), PAX8_RAT(P51974), PAX8_XENLA (Q9PUK5), PAX8_XENTR (A0JMA6), PAX9_CALGO (Q2VL59), PAX9_CALJA (Q2VL58), PAX9_CHICK (P55166), PAX9_DAUMA (Q2VL53), PAX9_HUMAN (P55771), PAX9_LEMCA (Q2VL52), PAX9_LEORO (Q2VL57), PAX9_LEPED (Q2VL51), PAX9_MACMU (Q2VL61), PAX9_MOUSE (P47242), PAX9_PANTR (Q2VL62), PAX9_PERPO (Q2VL54), PAX9_PROCO (Q2VL50), PAX9_RAT(Q2L4T2), PAX9_SAGOE (Q2VL56), PAX9_SAIBB (Q2VL60), POXM_DROME (P23757), POXN_DROME (P23758), PRD_DROME (P06601), VAB3_CAEEL (G5EDS1) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	1 sequence PAX3H_CAEEL (G5ED66)
UniProtKB/Swiss-Prot False positive sequences	7 sequences UVRC_MANSM (Q65U16), UVRC_PECAS (Q6D363), UVRC_THIDA (Q3SKW8), UVRC_VIBPA (Q87NC4), UVRC_VIBVU (Q8D8C7), UVRC_VIBVY (Q7MM39), Y150_TNAVC (Q06VD3) » more
PDB [Detailed view]	5 PDB 1K78; 1MDM; 1PDN; 2K27; 6PAX