PROSITE entry PS00042
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS00042 |
| Entry name [info] | HTH_CRP_1 |
| Accession [info] | PS00042 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00041 |
Name and characterization of the entry
| Description [info] | Crp-type HTH domain signature. |
| Pattern [info] |
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x- [STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF]. |
Numerical results [info]
| Total number of hits | 57 in 57 different sequences |
| Number of true positive hits | 56 in 56 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 25 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 98.25 % |
| Recall (true positives / (true positives + false negatives)) | 69.14 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
56 sequences
AADR_RHOPA (Q01980), ANR_PSEAE (P23926), ANR_PSEPH (O85222), BTR_BORPE (Q08530), CLP_XANAC (Q8PQ45), CLP_XANC8 (Q4UZF6), CLP_XANCB (B0RN01), CLP_XANCP (P22260), CLP_XANE5 (Q3BYB3), CLP_XANOM (Q2NYD9), CLP_XANOP (B2SL05), CLP_XANOR (Q5GV61), CRP_ECO57 (P0ACK0), CRP_ECOL6 (P0ACJ9), CRP_ECOLI (P0ACJ8), CRP_HAEIN (P29281), CRP_KLEAE (P0A2T7), CRP_PASMU (O05689), CRP_SALTY (P0A2T6), CRP_SHIFL (P0ACK1), CYSR_SYNE7 (P27369), CYSR_SYNY3 (Q55854), ETRA_SHEON (P46148), FIXK_AZOC5 (P26488), FIXK_BRADU (P29286), FIXK_RHIME (P13295), FLP_LACCA (P29284), FNRA_STUST (P47200), FNRL_CERS4 (P51007), FNRN_RHILV (P24290), FNR_AGGAC (Q9EXQ1), FNR_BACSU (P46908), FNR_ECO57 (P0A9E7), FNR_ECOL6 (P0A9E6), FNR_ECOLI (P0A9E5), FNR_HAEIN (P45199), FNR_KLEOX (Q9AQ50), FNR_PASMU (Q9CMY2), FNR_SALMS (P0A2T9), FNR_SALTI (Q8Z787), FNR_SALTY (P0A2T8), FNR_SHIDY (Q9LA24), FNR_SHIFL (P0A9E8), FNR_VIBC3 (A5F890), FNR_VIBCH (P0C6D0), FNR_YERPE (Q8ZE82), HLYX_ACTPL (P23619), LARR_LACPL (F9USS8), NTCA_NOSS1 (P0A4U6), NTCA_SYNE7 (P29283), NTCA_SYNY3 (P33779), NTCA_TRIV2 (P0A4U7), PRFA_LISMO (P22262), VFR_PSEAE (P55222), YCF28_NEOYE (Q1XDE5), YCF28_PORPU (P51342)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
25 sequences
ARCR_STAA1 (A7X715), ARCR_STAA2 (A6U515), ARCR_STAA3 (Q2FDM8), ARCR_STAA8 (Q2FUY1), ARCR_STAA9 (A5IW58), ARCR_STAAB (Q2YWH5), ARCR_STAAC (Q5HCR6), ARCR_STAAE (A6QKC0), ARCR_STAAM (Q99R06), ARCR_STAAN (Q7A381), ARCR_STAAR (Q6GDH1), ARCR_STAAS (Q6G643), ARCR_STAAT (A8Z5D0), ARCR_STAAW (Q8NUK9), ARCR_STAEQ (Q5HKU6), ARCR_STAES (Q8CML2), ARCR_STAHJ (Q4L9J7), CMR_MYCTO (P9WMH4), CMR_MYCTU (P9WMH5), CRPL_CORGL (Q79VI7), CRPL_MYCTO (P9WMH2), CRPL_MYCTU (P9WMH3), CRP_THET8 (Q5SID7), YEIL_ECO57 (P0A9F0), YEIL_ECOLI (P0A9E9)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
FNR_AGGAP (Q47948), FNR_CAPOD (Q46158), FNR_CAPSP (Q46159) |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y4FQ_SINFN (P55455) |
| PDB [Detailed view] |
95 PDB
1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1OMI; 1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BEO; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 2XGX; 2XHK; 2XKO; 2XKP; 3FWE; 3HIF; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4R8H; 5CIZ; 5F1R; 5LEJ; 5LEK; 5LRR; 5LRS; 5X6D; 5X6E; 6B6H; 6EUT; 6EUU; 6EUZ; 6EV0; 6EXK; 6EXL; 6EXM; 6HCK; 6PB4; 6PB5; 6PB6; 6QVY; 6QVZ; 6QW1; 6QW2; 6QWF; 6QWH; 6QWK; 6QWM; 6T5I; 7FEW; 7FF0; 7FF8; 7FF9; 8CB4; 8CB5; 8CB7; 8CB8; 8CBG; 8CBI; 8CBP; 8H3V; 8H40 » more |