![]() |
|
Entry: PS00042 |
Entry name [info] | HTH_CRP_1 |
Accession [info] | PS00042 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00041 |
Description [info] | Crp-type HTH domain signature. |
Pattern [info] |
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x- [STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF]. |
Total number of hits | 57 in 57 different sequences |
Number of true positive hits | 56 in 56 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 25 |
Number of 'partial' sequences | 3 |
Precision (true positives / (true positives + false positives)) | 98.25 % |
Recall (true positives / (true positives + false negatives)) | 69.14 % |
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
56 sequences
AADR_RHOPA (Q01980 ), ANR_PSEAE (P23926 ), ANR_PSEPH (O85222 ), BTR_BORPE (Q08530 ), CLP_XANAC (Q8PQ45 ), CLP_XANC5 (Q3BYB3 ), CLP_XANC8 (Q4UZF6 ), CLP_XANCB (B0RN01 ), CLP_XANCP (P22260 ), CLP_XANOM (Q2NYD9 ), CLP_XANOP (B2SL05 ), CLP_XANOR (Q5GV61 ), CRP_ECO57 (P0ACK0 ), CRP_ECOL6 (P0ACJ9 ), CRP_ECOLI (P0ACJ8 ), CRP_HAEIN (P29281 ), CRP_KLEAE (P0A2T7 ), CRP_PASMU (O05689 ), CRP_SALTY (P0A2T6 ), CRP_SHIFL (P0ACK1 ), CYSR_SYNE7 (P27369 ), CYSR_SYNY3 (Q55854 ), ETRA_SHEON (P46148 ), FIXK_AZOC5 (P26488 ), FIXK_BRADU (P29286 ), FIXK_RHIME (P13295 ), FLP_LACCA (P29284 ), FNRA_PSEST (P47200 ), FNRL_RHOS4 (P51007 ), FNRN_RHILV (P24290 ), FNR_AGGAC (Q9EXQ1 ), FNR_BACSU (P46908 ), FNR_ECO57 (P0A9E7 ), FNR_ECOL6 (P0A9E6 ), FNR_ECOLI (P0A9E5 ), FNR_HAEIN (P45199 ), FNR_KLEOX (Q9AQ50 ), FNR_PASMU (Q9CMY2 ), FNR_SALMS (P0A2T9 ), FNR_SALTI (Q8Z787 ), FNR_SALTY (P0A2T8 ), FNR_SHIDY (Q9LA24 ), FNR_SHIFL (P0A9E8 ), FNR_VIBC3 (A5F890 ), FNR_VIBCH (P0C6D0 ), FNR_YERPE (Q8ZE82 ), HLYX_ACTPL (P23619 ), LARR_LACPL (F9USS8 ), NTCA_NOSS1 (P0A4U6 ), NTCA_SYNE7 (P29283 ), NTCA_SYNY3 (P33779 ), NTCA_TRIV2 (P0A4U7 ), PRFA_LISMO (P22262 ), VFR_PSEAE (P55222 ), YCF28_PORPU (P51342 ), YCF28_PYRYE (Q1XDE5 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
25 sequences
ARCR_STAA1 (A7X715 ), ARCR_STAA2 (A6U515 ), ARCR_STAA3 (Q2FDM8 ), ARCR_STAA8 (Q2FUY1 ), ARCR_STAA9 (A5IW58 ), ARCR_STAAB (Q2YWH5 ), ARCR_STAAC (Q5HCR6 ), ARCR_STAAE (A6QKC0 ), ARCR_STAAM (Q99R06 ), ARCR_STAAN (Q7A381 ), ARCR_STAAR (Q6GDH1 ), ARCR_STAAS (Q6G643 ), ARCR_STAAT (A8Z5D0 ), ARCR_STAAW (Q8NUK9 ), ARCR_STAEQ (Q5HKU6 ), ARCR_STAES (Q8CML2 ), ARCR_STAHJ (Q4L9J7 ), CMR_MYCTO (P9WMH4 ), CMR_MYCTU (P9WMH5 ), CRPL_CORGL (Q79VI7 ), CRPL_MYCTO (P9WMH2 ), CRPL_MYCTU (P9WMH3 ), CRP_THET8 (Q5SID7 ), YEIL_ECO57 (P0A9F0 ), YEIL_ECOLI (P0A9E9 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
FNR_AGGAP (Q47948 ), FNR_CAPOD (Q46158 ), FNR_CAPSP (Q46159 ) |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y4FQ_SINFN (P55455 ) |
PDB [Detailed view] |
77 PDB
1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1OMI; 1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BEO; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 2XGX; 2XHK; 2XKO; 2XKP; 3FWE; 3HIF; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4R8H; 5CIZ; 5F1R; 5LEJ; 5LEK; 5LRR; 5LRS; 5X6D; 5X6E; 6EUT; 6EUU; 6EUZ; 6EV0; 6EXK; 6EXL; 6EXM; 6HCK; 6QVY; 6QVZ; 6QW1; 6QW2; 6QWF; 6QWH; 6QWK; 6QWM » more |