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Entry: PS00042

General information about the entry

Entry name [info] HTH_CRP_1
Accession [info] PS00042
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00041

Name and characterization of the entry

Description [info] Crp-type HTH domain signature.
Pattern [info] 
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x-
[STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 57 in 57 different sequences
Number of true positive hits 56 in 56 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 25
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 98.25 %
Recall (true positives / (true positives + false negatives)) 69.14 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 56 sequences 

AADR_RHOPA  (Q01980    ), ANR_PSEAE   (P23926    ), ANR_PSEPH   (O85222    ), 

BTR_BORPE   (Q08530    ), CLP_XANAC   (Q8PQ45    ), CLP_XANC5   (Q3BYB3    ), 
CLP_XANC8   (Q4UZF6    ), CLP_XANCB   (B0RN01    ), CLP_XANCP   (P22260    ), 
CLP_XANOM   (Q2NYD9    ), CLP_XANOP   (B2SL05    ), CLP_XANOR   (Q5GV61    ), 
CRP_ECO57   (P0ACK0    ), CRP_ECOL6   (P0ACJ9    ), CRP_ECOLI   (P0ACJ8    ), 
CRP_HAEIN   (P29281    ), CRP_KLEAE   (P0A2T7    ), CRP_PASMU   (O05689    ), 
CRP_SALTY   (P0A2T6    ), CRP_SHIFL   (P0ACK1    ), CYSR_SYNE7  (P27369    ), 
CYSR_SYNY3  (Q55854    ), ETRA_SHEON  (P46148    ), FIXK_AZOC5  (P26488    ), 
FIXK_BRADU  (P29286    ), FIXK_RHIME  (P13295    ), FLP_LACCA   (P29284    ), 
FNRA_PSEST  (P47200    ), FNRL_RHOS4  (P51007    ), FNRN_RHILV  (P24290    ), 
FNR_AGGAC   (Q9EXQ1    ), FNR_BACSU   (P46908    ), FNR_ECO57   (P0A9E7    ), 
FNR_ECOL6   (P0A9E6    ), FNR_ECOLI   (P0A9E5    ), FNR_HAEIN   (P45199    ), 
FNR_KLEOX   (Q9AQ50    ), FNR_PASMU   (Q9CMY2    ), FNR_SALMS   (P0A2T9    ), 
FNR_SALTI   (Q8Z787    ), FNR_SALTY   (P0A2T8    ), FNR_SHIDY   (Q9LA24    ), 
FNR_SHIFL   (P0A9E8    ), FNR_VIBC3   (A5F890    ), FNR_VIBCH   (P0C6D0    ), 
FNR_YERPE   (Q8ZE82    ), HLYX_ACTPL  (P23619    ), LARR_LACPL  (F9USS8    ), 
NTCA_NOSS1  (P0A4U6    ), NTCA_SYNE7  (P29283    ), NTCA_SYNY3  (P33779    ), 
NTCA_TRIV2  (P0A4U7    ), PRFA_LISMO  (P22262    ), VFR_PSEAE   (P55222    ), 
YCF28_PORPU (P51342    ), YCF28_PYRYE (Q1XDE5    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 25 sequences 

ARCR_STAA1  (A7X715    ), ARCR_STAA2  (A6U515    ), ARCR_STAA3  (Q2FDM8    ), 

ARCR_STAA8  (Q2FUY1    ), ARCR_STAA9  (A5IW58    ), ARCR_STAAB  (Q2YWH5    ), 
ARCR_STAAC  (Q5HCR6    ), ARCR_STAAE  (A6QKC0    ), ARCR_STAAM  (Q99R06    ), 
ARCR_STAAN  (Q7A381    ), ARCR_STAAR  (Q6GDH1    ), ARCR_STAAS  (Q6G643    ), 
ARCR_STAAT  (A8Z5D0    ), ARCR_STAAW  (Q8NUK9    ), ARCR_STAEQ  (Q5HKU6    ), 
ARCR_STAES  (Q8CML2    ), ARCR_STAHJ  (Q4L9J7    ), CMR_MYCTO   (P9WMH4    ), 
CMR_MYCTU   (P9WMH5    ), CRPL_CORGL  (Q79VI7    ), CRPL_MYCTO  (P9WMH2    ), 
CRPL_MYCTU  (P9WMH3    ), CRP_THET8   (Q5SID7    ), YEIL_ECO57  (P0A9F0    ), 
YEIL_ECOLI  (P0A9E9    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 3 sequences 

FNR_AGGAP   (Q47948    ), FNR_CAPOD   (Q46158    ), FNR_CAPSP   (Q46159    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			1 sequence
			


			
Y4FQ_SINFN  (P55455    )


				
	

	

		PDB
[Detailed view]		
		
			69 PDB
			


			1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1OMI; 
			
				1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BEO; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 
				2XGX; 2XHK; 2XKO; 2XKP; 3FWE; 3HIF; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 
				3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 
				4I02; 4I09; 4I0A; 4I0B; 4R8H; 5CIZ; 5F1R; 5LEJ; 5LEK; 5LRR; 5LRS; 5X6D; 
				5X6E; 6EUT; 6EUU; 6EUZ; 6EV0; 6EXK; 6EXL; 6EXM; 6HCK
			
			

			» more

				
	





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