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PROSITE entry PS00042


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PURL: https://purl.expasy.org/prosite/signature/PS00042

Direct ScanProsite submission
General information about the entry

Entry name [info] HTH_CRP_1
Accession [info] PS00042
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00041

Name and characterization of the entry

Description [info] Crp-type HTH domain signature.
Pattern [info] 
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x-
[STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 57 in 57 different sequences
Number of true positive hits 56 in 56 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 25
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 98.25 %
Recall (true positives / (true positives + false negatives)) 69.14 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 56 sequences 

AADR_RHOPA  (Q01980), ANR_PSEAE   (P23926), ANR_PSEPH   (O85222), 

BTR_BORPE   (Q08530), CLP_XANAC   (Q8PQ45), CLP_XANC8   (Q4UZF6), 
CLP_XANCB   (B0RN01), CLP_XANCP   (P22260), CLP_XANE5   (Q3BYB3), 
CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), CLP_XANOR   (Q5GV61), 
CRP_ECO57   (P0ACK0), CRP_ECOL6   (P0ACJ9), CRP_ECOLI   (P0ACJ8), 
CRP_HAEIN   (P29281), CRP_KLEAE   (P0A2T7), CRP_PASMU   (O05689), 
CRP_SALTY   (P0A2T6), CRP_SHIFL   (P0ACK1), CYSR_SYNE7  (P27369), 
CYSR_SYNY3  (Q55854), ETRA_SHEON  (P46148), FIXK_AZOC5  (P26488), 
FIXK_BRADU  (P29286), FIXK_RHIME  (P13295), FLP_LACCA   (P29284), 
FNRA_STUST  (P47200), FNRL_CERS4  (P51007), FNRN_RHILV  (P24290), 
FNR_AGGAC   (Q9EXQ1), FNR_BACSU   (P46908), FNR_ECO57   (P0A9E7), 
FNR_ECOL6   (P0A9E6), FNR_ECOLI   (P0A9E5), FNR_HAEIN   (P45199), 
FNR_KLEOX   (Q9AQ50), FNR_PASMU   (Q9CMY2), FNR_SALMS   (P0A2T9), 
FNR_SALTI   (Q8Z787), FNR_SALTY   (P0A2T8), FNR_SHIDY   (Q9LA24), 
FNR_SHIFL   (P0A9E8), FNR_VIBC3   (A5F890), FNR_VIBCH   (P0C6D0), 
FNR_YERPE   (Q8ZE82), HLYX_ACTPL  (P23619), LARR_LACPL  (F9USS8), 
NTCA_NOSS1  (P0A4U6), NTCA_SYNE7  (P29283), NTCA_SYNY3  (P33779), 
NTCA_TRIV2  (P0A4U7), PRFA_LISMO  (P22262), VFR_PSEAE   (P55222), 
YCF28_PORPU (P51342), YCF28_PYRYE (Q1XDE5)
» more

UniProtKB/Swiss-Prot
False negative sequences		 25 sequences 

ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA3  (Q2FDM8), 

ARCR_STAA8  (Q2FUY1), ARCR_STAA9  (A5IW58), ARCR_STAAB  (Q2YWH5), 
ARCR_STAAC  (Q5HCR6), ARCR_STAAE  (A6QKC0), ARCR_STAAM  (Q99R06), 
ARCR_STAAN  (Q7A381), ARCR_STAAR  (Q6GDH1), ARCR_STAAS  (Q6G643), 
ARCR_STAAT  (A8Z5D0), ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), 
ARCR_STAES  (Q8CML2), ARCR_STAHJ  (Q4L9J7), CMR_MYCTO   (P9WMH4), 
CMR_MYCTU   (P9WMH5), CRPL_CORGL  (Q79VI7), CRPL_MYCTO  (P9WMH2), 
CRPL_MYCTU  (P9WMH3), CRP_THET8   (Q5SID7), YEIL_ECO57  (P0A9F0), 
YEIL_ECOLI  (P0A9E9)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 3 sequences 

FNR_AGGAP   (Q47948), FNR_CAPOD   (Q46158), FNR_CAPSP   (Q46159)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			1 sequence
			


			
Y4FQ_SINFN  (P55455)


				
	

	

		PDB
[Detailed view]		
		
			101 PDB
			


			pdb_00001cgp; pdb_00001g6n; pdb_00001hw5; pdb_00001i5z; pdb_00001i6x; pdb_00001j59; pdb_00001lb2; pdb_00001o3q; pdb_00001o3r; pdb_00001o3s; pdb_00001o3t; pdb_00001omi; 
			
				pdb_00001run; pdb_00001ruo; pdb_00001zrc; pdb_00001zrd; pdb_00001zre; pdb_00001zrf; pdb_00002beo; pdb_00002bgc; pdb_00002cgp; pdb_00002gzw; pdb_00002oz6; pdb_00002wc2; 
				pdb_00002xgx; pdb_00002xhk; pdb_00002xko; pdb_00002xkp; pdb_00003fwe; pdb_00003hif; pdb_00003iwz; pdb_00003iyd; pdb_00003kcc; pdb_00003la2; pdb_00003la3; pdb_00003la7; 
				pdb_00003n4m; pdb_00003qop; pdb_00003rdi; pdb_00003rou; pdb_00003rpq; pdb_00003ryp; pdb_00003ryr; pdb_00004bh9; pdb_00004bhp; pdb_00004ft8; pdb_00004hzf; pdb_00004i01; 
				pdb_00004i02; pdb_00004i09; pdb_00004i0a; pdb_00004i0b; pdb_00004r8h; pdb_00005ciz; pdb_00005f1r; pdb_00005lej; pdb_00005lek; pdb_00005lrr; pdb_00005lrs; pdb_00005x6d; 
				pdb_00005x6e; pdb_00006b6h; pdb_00006eut; pdb_00006euu; pdb_00006euz; pdb_00006ev0; pdb_00006exk; pdb_00006exl; pdb_00006exm; pdb_00006hck; pdb_00006pb4; pdb_00006pb5; 
				pdb_00006pb6; pdb_00006qvy; pdb_00006qvz; pdb_00006qw1; pdb_00006qw2; pdb_00006qwf; pdb_00006qwh; pdb_00006qwk; pdb_00006qwm; pdb_00006t5i; pdb_00007few; pdb_00007ff0; 
				pdb_00007ff8; pdb_00007ff9; pdb_00008cb4; pdb_00008cb5; pdb_00008cb7; pdb_00008cb8; pdb_00008cbg; pdb_00008cbi; pdb_00008cbp; pdb_00008h3v; pdb_00008h40; pdb_00009gqu; 
				pdb_00009gug; pdb_00009guh; pdb_00009gui; pdb_00009guj; pdb_00009guk
			
			

			» more