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PROSITE entry PS00042
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General information about the entry
| Entry name [info] | HTH_CRP_1 |
| Accession [info] | PS00042 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00041 |
Name and characterization of the entry
| Description [info] | Crp-type HTH domain signature. |
| Pattern [info] |
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x- [STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF]. |
Numerical results [info]
| Total number of hits | 57 in 57 different sequences |
| Number of true positive hits | 56 in 56 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 25 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 98.25 % |
| Recall (true positives / (true positives + false negatives)) | 69.14 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
56 sequences
AADR_RHOPA (Q01980), ANR_PSEAE (P23926), ANR_PSEPH (O85222), BTR_BORPE (Q08530), CLP_XANAC (Q8PQ45), CLP_XANC8 (Q4UZF6), CLP_XANCB (B0RN01), CLP_XANCP (P22260), CLP_XANE5 (Q3BYB3), CLP_XANOM (Q2NYD9), CLP_XANOP (B2SL05), CLP_XANOR (Q5GV61), CRP_ECO57 (P0ACK0), CRP_ECOL6 (P0ACJ9), CRP_ECOLI (P0ACJ8), CRP_HAEIN (P29281), CRP_KLEAE (P0A2T7), CRP_PASMU (O05689), CRP_SALTY (P0A2T6), CRP_SHIFL (P0ACK1), CYSR_SYNE7 (P27369), CYSR_SYNY3 (Q55854), ETRA_SHEON (P46148), FIXK_AZOC5 (P26488), FIXK_BRADU (P29286), FIXK_RHIME (P13295), FLP_LACCA (P29284), FNRA_STUST (P47200), FNRL_CERS4 (P51007), FNRN_RHILV (P24290), FNR_AGGAC (Q9EXQ1), FNR_BACSU (P46908), FNR_ECO57 (P0A9E7), FNR_ECOL6 (P0A9E6), FNR_ECOLI (P0A9E5), FNR_HAEIN (P45199), FNR_KLEOX (Q9AQ50), FNR_PASMU (Q9CMY2), FNR_SALMS (P0A2T9), FNR_SALTI (Q8Z787), FNR_SALTY (P0A2T8), FNR_SHIDY (Q9LA24), FNR_SHIFL (P0A9E8), FNR_VIBC3 (A5F890), FNR_VIBCH (P0C6D0), FNR_YERPE (Q8ZE82), HLYX_ACTPL (P23619), LARR_LACPL (F9USS8), NTCA_NOSS1 (P0A4U6), NTCA_SYNE7 (P29283), NTCA_SYNY3 (P33779), NTCA_TRIV2 (P0A4U7), PRFA_LISMO (P22262), VFR_PSEAE (P55222), YCF28_NEOYE (Q1XDE5), YCF28_PORPU (P51342)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
25 sequences
ARCR_STAA1 (A7X715), ARCR_STAA2 (A6U515), ARCR_STAA3 (Q2FDM8), ARCR_STAA8 (Q2FUY1), ARCR_STAA9 (A5IW58), ARCR_STAAB (Q2YWH5), ARCR_STAAC (Q5HCR6), ARCR_STAAE (A6QKC0), ARCR_STAAM (Q99R06), ARCR_STAAN (Q7A381), ARCR_STAAR (Q6GDH1), ARCR_STAAS (Q6G643), ARCR_STAAT (A8Z5D0), ARCR_STAAW (Q8NUK9), ARCR_STAEQ (Q5HKU6), ARCR_STAES (Q8CML2), ARCR_STAHJ (Q4L9J7), CMR_MYCTO (P9WMH4), CMR_MYCTU (P9WMH5), CRPL_CORGL (Q79VI7), CRPL_MYCTO (P9WMH2), CRPL_MYCTU (P9WMH3), CRP_THET8 (Q5SID7), YEIL_ECO57 (P0A9F0), YEIL_ECOLI (P0A9E9)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
FNR_AGGAP (Q47948), FNR_CAPOD (Q46158), FNR_CAPSP (Q46159) |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y4FQ_SINFN (P55455) |
| PDB [Detailed view] |
88 PDB
1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1OMI; 1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BEO; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 2XGX; 2XHK; 2XKO; 2XKP; 3FWE; 3HIF; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B; 4R8H; 5CIZ; 5F1R; 5LEJ; 5LEK; 5LRR; 5LRS; 5X6D; 5X6E; 6B6H; 6EUT; 6EUU; 6EUZ; 6EV0; 6EXK; 6EXL; 6EXM; 6HCK; 6PB4; 6PB5; 6PB6; 6QVY; 6QVZ; 6QW1; 6QW2; 6QWF; 6QWH; 6QWK; 6QWM; 6T5I; 7FEW; 7FF0; 7FF8; 7FF9; 8H3V; 8H40 » more |