PROSITE entry PS00051

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General information about the entry

Entry name [info]	RIBOSOMAL_L39E
Accession [info]	PS00051
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00050

Name and characterization of the entry

Description [info]	Ribosomal protein L39e signature.
Pattern [info]	[KRM]-[PTKS]-x(3)-[LIVMFG]-x(2)-[NHS]-x(3)-R-[DNHY]-W-R-[RS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.

Total number of hits	76 in 76 different sequences
Number of true positive hits	76 in 76 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	5
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	93.83 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

76 sequences

RL391_ARATH (P51424), RL391_ORYSJ (Q6KAJ8), RL392_ARATH (Q8L8W6),

RL392_ORYSJ (P51426), RL393_ORYSJ (Q5SMI4), RL39L_HUMAN (Q96EH5), 
RL39L_MOUSE (Q9CQD0), RL39_AERPE  (P59472), RL39_ARCFU  (O28212), 
RL39_ASHGO  (Q758D8), RL39_BOVIN  (Q3T051), RL39_CAEEL  (P52814), 
RL39_CALMQ  (A8MAL5), RL39_CANAL  (A0A1D8PDT4), RL39_CANAX  (Q96W55), 
RL39_CHICK  (Q98TF5), RL39_DEBHA  (Q6BHV8), RL39_DROME  (O16130), 
RL39_ENCCU  (Q8SQP8), RL39_HALLT  (B9LUV0), RL39_HALMA  (P22452), 
RL39_HALS3  (B0R7X9), RL39_HALSA  (Q9HMM9), RL39_HALWD  (Q18EU6), 
RL39_HUMAN  (P62891), RL39_HYPBU  (A2BN55), RL39_ICTPU  (Q90YS9), 
RL39_KLULA  (Q6CW22), RL39_KLUMA  (P48536), RL39_MAIZE  (P51425), 
RL39_META3  (A6UVQ6), RL39_METAC  (Q8TIN2), RL39_METBF  (Q46FA3), 
RL39_METBU  (Q12ZJ3), RL39_METJA  (P54056), RL39_METKA  (Q8TUY3), 
RL39_METLZ  (A2STI9), RL39_METM5  (A4G029), RL39_METM6  (A9A8D5), 
RL39_METM7  (A6VIE9), RL39_METMA  (Q8PYQ5), RL39_METMJ  (A3CWZ6), 
RL39_METMP  (Q6M0V9), RL39_METS5  (A4YH79), RL39_METTH  (O27650), 
RL39_METVS  (A6URE0), RL39_MOUSE  (P62892), RL39_PICTO  (Q6L2L2), 
RL39_PLUXY  (Q6F482), RL39_PYRAB  (Q9UYI8), RL39_PYRAE  (Q8ZTX6), 
RL39_PYRAR  (A4WLS6), RL39_PYRCJ  (A3MUU4), RL39_PYRFU  (Q8U3S6), 
RL39_PYRHO  (P59473), RL39_PYRIL  (A1RRN8), RL39_PYRNV  (B1YAF1), 
RL39_RAT(P62893), RL39_SACS2  (Q980F9), RL39_SCHPO  (P05767), 
RL39_SPOFR  (Q962S4), RL39_SULAC  (P13005), RL39_SULIA  (C3MZB1), 
RL39_SULIK  (C4KII9), RL39_SULIL  (C3MR76), RL39_SULIM  (C3MXG5), 
RL39_SULIN  (C3NGA3), RL39_SULIY  (C3N7D1), RL39_SULTO  (Q971I1), 
RL39_TETTS  (P0DJ61), RL39_THEAC  (Q9HM18), RL39_THEGJ  (C5A7H4), 
RL39_THEKO  (Q5JGT6), RL39_THESM  (C6A264), RL39_THEVO  (Q97CU2), 
RL39_YEAST  (P04650)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

5 sequences

RL39_DESA1  (B8D5Q7), RL39_METPE  (B8GEU4), RL39_METS3  (A5UL33),

RL39_STAMF  (A3DNH3), RL39_THEON  (B6YWY4)

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PDB
[Detailed view]

227 PDB

1FFK; 1S72; 1VQ4; 1VQ5; 1VQ6; 1VQ7; 1VQ8; 1VQ9; 1VQK; 1VQL; 1VQM; 1VQN; 1VQO; 1VQP; 1YHQ; 1YI2; 1YIJ; 1YIT; 1YJ9; 1YJN; 1YJW; 2OTJ; 2OTL; 2QA4; 2QEX; 2WW9; 2WWA; 2WWB; 3CC2; 3CC4; 3CC7; 3CCE; 3CCJ; 3CCL; 3CCM; 3CCQ; 3CCR; 3CCS; 3CCU; 3CCV; 3CD6; 3CMA; 3CME; 3CPW; 3G4S; 3G6E; 3G71; 3I55; 3I56; 3J6X; 3J6Y; 3J77; 3J78; 3JCT; 4ADX; 4U3M; 4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 4U52; 4U53; 4U55; 4U56; 4U6F; 4UG0; 4V4N; 4V6I; 4V6U; 4V6W; 4V6X; 4V7F; 4V7R; 4V88; 4V8P; 4V8T; 4V8Y; 4V8Z; 4V91; 4V9F; 5AJ0; 5APN; 5APO; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 5GAK; 5H4P; 5I4L; 5IT7; 5JCS; 5JUO; 5JUP; 5JUS; 5JUT; 5JUU; 5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 5OBM; 5ON6; 5T2C; 5T62; 5T6R; 5TBW; 5TGA; 5TGM; 6FT6; 6GQ1; 6GQB; 6GQV; 6HD7; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6LQM; 6LSR; 6LSS; 6LU8; 6M62; 6N8J; 6N8K; 6N8L; 6N8M; 6N8N; 6N8O; 6OIG; 6OLE; 6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QIK; 6QT0; 6QTZ; 6QZP; 6R84; 6R86; 6R87; 6RI5; 6RZZ; 6S05; 6S47; 6SKF; 6SKG; 6SNT; 6SV4; 6SWA; 6T4Q; 6T7I; 6T7T; 6T83; 6TB3; 6TH6; 6TNU; 6W6L; 6WOO; 6XA1; 6XIQ; 6XIR; 6XU6; 6XU7; 6XU8; 6Y0G; 6Y2L; 6Y57; 6Y6X; 6YLG; 6YLH; 6YLX; 6YLY; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZM7; 6ZME; 6ZMI; 6ZMO; 7AZY; 7B7D; 7BHP; 7CPU; 7CPV; 7F5S; 7LS1; 7LS2; 7MPI; 7MPJ; 7N8B; 7NRC; 7NRD; 7OF1; 7OH3; 7OHQ; 7PZY; 7Q08; 7Q0F; 7Q0P; 7Q0R; 7QEP; 7TOO; 7TOP; 7Z34; 7ZW0
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