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Entry: PS00067

General information about the entry

Entry name [info] 3HCDH
Accession [info] PS00067
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
17-JUN-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00065

Name and characterization of the entry

Description [info] 3-hydroxyacyl-CoA dehydrogenase signature.
Pattern [info] 
[DNES]-x(2)-[GA]-F-[LIVMFYA]-x-[NT]-R-x(3)-[PA]-[LIVMFY]-[LIVMFYST]-
x(5,6)-[LIVMFYCT]-[LIVMFYEAH]-x(2)-[GVE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_03 which contains 562'755 sequence entries.


Total number of hits 220 in 220 different sequences
Number of true positive hits 220 in 220 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 19
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 92.05 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 220 sequences 

AIM1_ARATH  (Q9ZPI6    ), CRYL1_BOVIN (Q8SPX7    ), CRYL1_HUMAN (Q9Y2S2    ), 

CRYL1_MOUSE (Q99KP3    ), CRYL1_PONAB (Q5RDZ2    ), CRYL1_RABIT (P14755    ), 
CRYL1_RAT   (Q811X6    ), ECHA_HUMAN  (P40939    ), ECHA_MOUSE  (Q8BMS1    ), 
ECHA_PIG    (Q29554    ), ECHA_RAT    (Q64428    ), ECHP_DANRE  (Q6NYL3    ), 
ECHP_HUMAN  (Q08426    ), ECHP_MOUSE  (Q9DBM2    ), ECHP_PONAB  (Q5R5M8    ), 
ECHP_RAT    (P07896    ), FADB_ACIAD  (Q6FF68    ), FADB_ACIB3  (B7H1I0    ), 
FADB_ACIB5  (B7I3P1    ), FADB_ACIBC  (B2I2J9    ), FADB_ACIBS  (B0VLX4    ), 
FADB_ACIBY  (B0VE45    ), FADB_AERHH  (A0KEL1    ), FADB_AERS4  (A4STF2    ), 
FADB_ALIF1  (Q5E8X6    ), FADB_ALIFM  (B5FEW8    ), FADB_ALISL  (B6EGU2    ), 
FADB_CITK8  (A8ACZ4    ), FADB_COLP3  (Q489W3    ), FADB_CROS8  (A7MQP0    ), 
FADB_ECO24  (A7ZU51    ), FADB_ECO27  (B7UNH4    ), FADB_ECO45  (B7MHD1    ), 
FADB_ECO55  (B7L9A7    ), FADB_ECO57  (Q8X8I2    ), FADB_ECO5E  (B5YY93    ), 
FADB_ECO7I  (B7NV20    ), FADB_ECO81  (B7N2F2    ), FADB_ECO8A  (B7M649    ), 
FADB_ECOBW  (C5A020    ), FADB_ECODH  (B1XAK8    ), FADB_ECOHS  (A8A6V1    ), 
FADB_ECOL5  (Q0TAL0    ), FADB_ECOL6  (Q8FBI2    ), FADB_ECOLC  (B1IW61    ), 
FADB_ECOLI  (P21177    ), FADB_ECOLU  (B7NFE7    ), FADB_ECOSE  (B6I4I6    ), 
FADB_ECOSM  (B1LM32    ), FADB_ECOUT  (Q1R466    ), FADB_ENT38  (A4WFX4    ), 
FADB_ENTCL  (Q9F0Y7    ), FADB_ESCF3  (B7LTY9    ), FADB_IDILO  (Q5QXH7    ), 
FADB_KLEP3  (B5XYH0    ), FADB_KLEP7  (A6TGM4    ), FADB_PECAS  (Q6DAP5    ), 
FADB_PHOLL  (Q7MZ92    ), FADB_PHOPR  (Q6LW06    ), FADB_PSE14  (Q48GW3    ), 
FADB_PSEA7  (A6V382    ), FADB_PSEA8  (B7UYR6    ), FADB_PSEAB  (Q02PH8    ), 
FADB_PSEAE  (Q9HZJ2    ), FADB_PSEE4  (Q1I7D4    ), FADB_PSEF5  (Q4KFC4    ), 
FADB_PSEFR  (P28793    ), FADB_PSEFS  (C3K613    ), FADB_PSEMY  (A4XSM8    ), 
FADB_PSEOL  (Q93Q12    ), FADB_PSEP1  (A5W6H0    ), FADB_PSEPF  (Q3K9D8    ), 
FADB_PSEPG  (B0KH74    ), FADB_PSEPK  (Q88L02    ), FADB_PSEPU  (Q9AHY3    ), 
FADB_PSEPW  (B1J5A5    ), FADB_PSESM  (Q87ZB2    ), FADB_PSEU2  (Q4ZRA0    ), 
FADB_PSEU5  (A4VKA3    ), FADB_PSYA2  (Q4FQC6    ), FADB_PSYCK  (Q1Q8J9    ), 
FADB_PSYWF  (A5WH99    ), FADB_SALA4  (B5EZW0    ), FADB_SALCH  (Q57HM6    ), 
FADB_SALEP  (B5QW85    ), FADB_SALG2  (B5RFL6    ), FADB_SALNS  (B4SZ85    ), 
FADB_SALPA  (Q5PKQ2    ), FADB_SALPB  (A9MYB0    ), FADB_SALPK  (B5BIZ0    ), 
FADB_SALSV  (B4TNZ1    ), FADB_SALTI  (Q8Z3C6    ), FADB_SALTY  (Q9L6L5    ), 
FADB_SERP5  (A8G8D1    ), FADB_SHEAM  (A1S1I8    ), FADB_SHEB2  (B8E3R3    ), 
FADB_SHEB5  (A3CYJ4    ), FADB_SHEB8  (A6WHA0    ), FADB_SHEB9  (A9KU91    ), 
FADB_SHEFN  (Q08A39    ), FADB_SHEHH  (B0TLB9    ), FADB_SHELP  (A3Q8U4    ), 
FADB_SHEON  (Q8EKR9    ), FADB_SHEPA  (A8GYG0    ), FADB_SHEPC  (A4Y1B6    ), 
FADB_SHEPW  (B8CH91    ), FADB_SHESA  (A0KR50    ), FADB_SHESH  (A8FP63    ), 
FADB_SHESM  (Q0HPB7    ), FADB_SHESR  (Q0I0T3    ), FADB_SHESW  (A1RDW6    ), 
FADB_SHEWM  (B1KCZ3    ), FADB_SHIB3  (B2TVJ5    ), FADB_SHIDS  (Q32A21    ), 
FADB_SHIF8  (Q0SZ36    ), FADB_SHIFL  (Q83PG1    ), FADB_SHISS  (Q3YVC1    ), 
FADB_VIBC3  (A5F465    ), FADB_VIBCB  (A7N1D2    ), FADB_VIBCH  (Q9KNI1    ), 
FADB_VIBCM  (C3LSI3    ), FADB_VIBPA  (Q87TN9    ), FADB_VIBTL  (B7VGL4    ), 
FADB_VIBVU  (Q8DDK6    ), FADB_VIBVY  (Q7MQH9    ), FADB_YERE8  (A1JIG4    ), 
FADB_YERP3  (A7FDF2    ), FADB_YERPA  (Q1C2C4    ), FADB_YERPB  (B2K0Z6    ), 
FADB_YERPE  (Q8ZAN0    ), FADB_YERPG  (A9R754    ), FADB_YERPN  (Q1CN99    ), 
FADB_YERPP  (A4TR27    ), FADB_YERPS  (Q66FR8    ), FADB_YERPY  (B1JP63    ), 
FADJ_ALIF1  (Q5E3U1    ), FADJ_CITK8  (A8ADP2    ), FADJ_CROS8  (A7MH81    ), 
FADJ_ECO24  (A7ZPF8    ), FADJ_ECO27  (B7UFZ8    ), FADJ_ECO45  (B7MGV7    ), 
FADJ_ECO55  (B7LBJ5    ), FADJ_ECO57  (Q8XCP2    ), FADJ_ECO5E  (B5YXY4    ), 
FADJ_ECO7I  (B7NP24    ), FADJ_ECO81  (B7MY16    ), FADJ_ECO8A  (B7M6M2    ), 
FADJ_ECOBW  (C4ZVN2    ), FADJ_ECODH  (B1X9L4    ), FADJ_ECOHS  (A8A2L0    ), 
FADJ_ECOK1  (A1ADI8    ), FADJ_ECOL5  (Q0TFA6    ), FADJ_ECOL6  (Q8FFG4    ), 
FADJ_ECOLC  (B1IXA5    ), FADJ_ECOLI  (P77399    ), FADJ_ECOLU  (B7N5V2    ), 
FADJ_ECOSE  (B6I6Q4    ), FADJ_ECOSM  (B1LME7    ), FADJ_ECOUT  (Q1R972    ), 
FADJ_ENT38  (A4WCW6    ), FADJ_ESCF3  (B7LLD0    ), FADJ_IDILO  (Q5QXM1    ), 
FADJ_KLEP3  (B5XVW2    ), FADJ_KLEP7  (A6TC19    ), FADJ_PECAS  (Q6D2L7    ), 
FADJ_PECCP  (C6DAL7    ), FADJ_PHOLL  (Q7N288    ), FADJ_PHOPR  (Q6LTK3    ), 
FADJ_SALA4  (B5EZR9    ), FADJ_SALCH  (Q57LW6    ), FADJ_SALDC  (B5FPN1    ), 
FADJ_SALEP  (B5R3R9    ), FADJ_SALG2  (B5RCL3    ), FADJ_SALHS  (B4TCA8    ), 
FADJ_SALNS  (B4SZR0    ), FADJ_SALPA  (Q5PCX6    ), FADJ_SALPB  (A9N453    ), 
FADJ_SALPK  (B5BBA1    ), FADJ_SALSV  (B4TQC2    ), FADJ_SALTI  (Q8Z4Z0    ), 
FADJ_SALTY  (Q8ZNA7    ), FADJ_SERP5  (A8GH86    ), FADJ_SHIB3  (B2TWV4    ), 
FADJ_SHIBS  (Q31YB7    ), FADJ_SHIDS  (Q32DJ4    ), FADJ_SHIF8  (Q0T2E6    ), 
FADJ_SHIFL  (Q83QQ0    ), FADJ_SHISS  (Q3YZM2    ), FADJ_VIBC3  (A5F2P2    ), 
FADJ_VIBCB  (A7MS61    ), FADJ_VIBCH  (Q9KT58    ), FADJ_VIBPA  (Q87MM3    ), 
FADJ_VIBVU  (Q8DB47    ), FADJ_VIBVY  (Q7MIS5    ), FADJ_YERE8  (A1JK30    ), 
FADJ_YERP3  (A7FGK1    ), FADJ_YERPA  (Q1C660    ), FADJ_YERPE  (Q8ZD45    ), 
FADJ_YERPN  (Q1CHK2    ), FADJ_YERPP  (A4TM82    ), FADJ_YERPS  (Q668V1    ), 
FHMCD_RHILO (Q988C8    ), HBD_BACSU   (P45856    ), HBD_BRADU   (Q45223    ), 
HBD_CLOAB   (P52041    ), HBD_CLODI   (P45364    ), HBD_DEIRA   (Q9RVG1    ), 
HBD_SYNWW   (Q0AVM2    ), HBD_THETC   (P77851    ), HCDH1_CAEEL (P34439    ), 
HCDH2_CAEEL (P41938    ), HCDH_HUMAN  (Q16836    ), HCDH_MOUSE  (Q61425    ), 
HCDH_PIG    (P00348    ), HCDH_RAT    (Q9WVK7    ), MFP2_ARATH  (Q9ZPI5    ), 
MFPA_BRANA  (O49809    ), MFPA_CUCSA  (Q39659    ), MFP_ORYSJ   (Q8W1L6    ), 
PAAH_ECOLI  (P76083    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 19 sequences 

CRYL1_PIG   (Q8SQ26    ), FAD3_RICFE  (Q4UL32    ), FAD3_RICPR  (Q9ZCZ1    ), 

FAD3_RICTY  (Q68WH7    ), FADB2_MYCTO (P9WNP6    ), FADB2_MYCTU (P9WNP7    ), 
FADJ_SHEAM  (A1S7L6    ), FADJ_SHEB5  (A3D684    ), FADJ_SHEB8  (A6WQ25    ), 
FADJ_SHEFN  (Q07ZP8    ), FADJ_SHEHH  (B0TL21    ), FADJ_SHELP  (A3QFP3    ), 
FADJ_SHEON  (Q8ECP7    ), FADJ_SHEPC  (A4Y897    ), FADJ_SHESA  (A0KV76    ), 
FADJ_SHESM  (Q0HKD1    ), FADJ_SHESR  (Q0HWN3    ), FADJ_SHESW  (A1RI92    ), 
HCDH_DEIRA  (P83589    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

HBD_CLOPA   (P81343    )


				
	





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