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Entry: PS00073

General information about the entry

Entry name [info] ACYL_COA_DH_2
Accession [info] PS00073
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
31-JUL-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00070

Name and characterization of the entry

Description [info] Acyl-CoA dehydrogenases signature 2.
Pattern [info] 
[QDE]-x-{P}-G-[GS]-x-G-[LIVMFY]-x(2)-[DEN]-x(4)-[KR]-x(3)-[DEN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_07 which contains 560'537 sequence entries.


Total number of hits 120 in 120 different sequences
Number of true positive hits 114 in 114 different sequences
Number of 'unknown' hits 0
Number of false positive hits 6 in 6 different sequences
Number of false negative sequences 34
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 95.00 %
Recall (true positives / (true positives + false negatives)) 77.03 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 114 sequences 

ACAD1_CAEBR (A8XNF0    ), ACAD8_DICDI (Q54IM8    ), ACAD9_HUMAN (Q9H845    ), 

ACAD9_MOUSE (Q8JZN5    ), ACADL_HUMAN (P28330    ), ACADL_MACFA (Q60HI0    ), 
ACADL_MOUSE (P51174    ), ACADL_PIG   (P79274    ), ACADL_RAT   (P15650    ), 
ACADM_BOVIN (Q3SZB4    ), ACADM_CAEEL (Q22347    ), ACADM_DROME (Q9VSA3    ), 
ACADM_HUMAN (P11310    ), ACADM_MACFA (Q8HXY8    ), ACADM_MOUSE (P45952    ), 
ACADM_PANTR (A5A6I0    ), ACADM_PIG   (P41367    ), ACADM_RAT   (P08503    ), 
ACADS_BOVIN (Q3ZBF6    ), ACADS_HUMAN (P16219    ), ACADS_MOUSE (Q07417    ), 
ACADS_PIG   (P79273    ), ACADS_PONAB (Q5RAS0    ), ACADS_RAT   (P15651    ), 
ACADV_BOVIN (P48818    ), ACADV_HUMAN (P49748    ), ACADV_MACFA (Q8HXY7    ), 
ACADV_MOUSE (P50544    ), ACADV_RAT   (P45953    ), ACDA_BACSU  (P45867    ), 
ACDB_BACSU  (P45857    ), ACDC_BACSU  (O34421    ), ACDP_MYCBO  (P63428    ), 
ACDP_MYCLE  (P46703    ), ACDP_MYCTO  (P9WQG0    ), ACDP_MYCTU  (P9WQG1    ), 
ACDSB_HUMAN (P45954    ), ACDSB_MOUSE (Q9DBL1    ), ACDSB_PONAB (Q5RF40    ), 
ACDSB_RAT   (P70584    ), ACDS_CLOAB  (P52042    ), ACDS_MEGEL  (Q06319    ), 
ACOX4_ARATH (Q96329    ), ACRC_CLOPR  (G3KIM8    ), AIDB_ECOLI  (P33224    ), 
CAIA_CITK8  (A8ALR4    ), CAIA_ECO24  (A7ZHD0    ), CAIA_ECO27  (B7UI85    ), 
CAIA_ECO45  (B7MAG2    ), CAIA_ECO55  (B7L4G2    ), CAIA_ECO57  (P60586    ), 
CAIA_ECO5E  (B5YYD3    ), CAIA_ECO7I  (B7NHE3    ), CAIA_ECO81  (B7MNP6    ), 
CAIA_ECO8A  (B7M0D6    ), CAIA_ECOBW  (C4ZPW5    ), CAIA_ECODH  (B1XBG4    ), 
CAIA_ECOHS  (A7ZVY9    ), CAIA_ECOK1  (A1A789    ), CAIA_ECOL5  (Q0TLV0    ), 
CAIA_ECOL6  (P60585    ), CAIA_ECOLC  (B1IRD7    ), CAIA_ECOLI  (P60584    ), 
CAIA_ECOLU  (B7N7R4    ), CAIA_ECOSE  (B6HYZ0    ), CAIA_ECOSM  (B1LFX2    ), 
CAIA_ECOUT  (Q1RGF9    ), CAIA_ESCF3  (B7LWN0    ), CAIA_PROMH  (B4EY23    ), 
CAIA_PROSL  (Q8GB20    ), CAIA_SALA4  (B5F752    ), CAIA_SALAR  (A9MQH5    ), 
CAIA_SALCH  (Q57TI8    ), CAIA_SALDC  (B5FHG7    ), CAIA_SALEP  (B5R1R2    ), 
CAIA_SALG2  (B5RGA6    ), CAIA_SALHS  (B4TIH2    ), CAIA_SALNS  (B4T6J8    ), 
CAIA_SALPA  (Q5PIN6    ), CAIA_SALPB  (A9MYJ9    ), CAIA_SALPC  (C0Q4L5    ), 
CAIA_SALPK  (B5BL57    ), CAIA_SALSV  (B4TWR6    ), CAIA_SALTI  (Q8Z9L2    ), 
CAIA_SALTY  (Q8ZRX2    ), CAIA_SHIDS  (Q32K58    ), CAIA_SHIF8  (Q0T8F5    ), 
CAIA_SHIFL  (P60587    ), CAIA_SHISS  (Q3Z5W9    ), CARC_ACEWD  (H6LGM6    ), 
CH1CO_SYNAS (Q2LQN9    ), CHCOA_SYNAS (Q2LQP0    ), FADE_BACSU  (O32176    ), 
GCDH_BOVIN  (Q2KHZ9    ), GCDH_CAEEL  (Q20772    ), GCDH_DICDI  (Q54R47    ), 
GCDH_HUMAN  (Q92947    ), GCDH_MACFA  (Q8HXX8    ), GCDH_MOUSE  (Q60759    ), 
GCDH_PIG    (P81140    ), IVD_ARATH   (Q9SWG0    ), IVD_BOVIN   (Q3SZI8    ), 
IVD_CAEEL   (P34275    ), IVD_HUMAN   (P26440    ), IVD_MOUSE   (Q9JHI5    ), 
IVD_ORYSJ   (Q75IM9    ), IVD_PONAB   (Q5RBD5    ), IVD_RAT     (P12007    ), 
IVD_SOLTU   (Q9FS87    ), MBCD_SOLTU  (Q9FS88    ), MCD_RHOSH   (D3JV03    ), 
YDIO_ECO57  (P0A9V0    ), YDIO_ECOL6  (P0A9U9    ), YDIO_ECOLI  (P0A9U8    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 34 sequences 

ACAD8_BOVIN (Q0NXR6    ), ACAD8_HUMAN (Q9UKU7    ), ACAD8_MOUSE (Q9D7B6    ), 

ACD10_HUMAN (Q6JQN1    ), ACD10_MOUSE (Q8K370    ), ACD17_MYCTU (P95280    ), 
ACDC_MYCBO  (Q7U0Y2    ), ACDC_MYCTO  (P9WQG2    ), ACDC_MYCTU  (P9WQG3    ), 
ACDSB_BOVIN (Q5EAD4    ), ACDSB_DICDI (Q54RR5    ), ACD_DESML   (C3UVB0    ), 
BBSG_THAAR  (Q9KJE8    ), CHSE1_MYCTU (P71857    ), CHSE2_MYCTU (P71858    ), 
CHSE3_MYCTU (P96855    ), CHSE4_MYCTU (I6YCA3    ), CHSE5_MYCTU (I6Y3Q0    ), 
FADE_ECO57  (Q8X7R2    ), FADE_ECOLI  (Q47146    ), FADE_SALTI  (Q8Z937    ), 
FADE_SALTY  (Q8ZRJ7    ), FADE_YERPE  (Q8ZBY6    ), MBTN_MYCBO  (P63432    ), 
MBTN_MYCPA  (Q73ZP8    ), MBTN_MYCSS  (Q1BBA3    ), MBTN_MYCTO  (P9WQF8    ), 
MBTN_MYCTU  (P9WQF9    ), NAO_FUSOX   (Q8X1D8    ), PIGA_SERS3  (Q5W271    ), 
Y873_MYCTO  (P9WQF6    ), Y873_MYCTU  (P9WQF7    ), Y897_MYCBO  (P63430    ), 
YDBM_BACSU  (P96608    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 6 sequences 

EIF3J_KLULA (Q6CMJ8    ), LAMB_SERP5  (A8GKC3    ), NCAP_ISAV8  (Q8V3T7    ), 

PP392_ARATH (Q3E9F0    ), PPR18_ARATH (Q9M9X9    ), SYL_EHRCR   (Q2GG41    )
» more

PDB
[Detailed view]		 26 PDB

1BUC; 1EGC; 1EGD; 1EGE; 1IVH; 1JQI; 1SIQ; 1SIR; 1T9G; 1UDY; 2A1T; 2IX5; 2IX6; 2JIF; 2R0M; 2R0N; 2UXW; 2VIG; 3B96; 3DJL; 3MDD; 3MDE; 3U33; 4P13; 5LNX; 6FAH
» more

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