PROSITE entry PS00073
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General information about the entry
| Entry name [info] | ACYL_COA_DH_2 |
| Accession [info] | PS00073 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00070 |
Name and characterization of the entry
| Description [info] | Acyl-CoA dehydrogenases signature 2. |
| Pattern [info] |
[QDE]-x-{P}-G-[GS]-x-G-[LIVMFY]-x(2)-[DEN]-x(4)-[KR]-x(3)-[DEN].
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Numerical results [info]
| Total number of hits | 126 in 126 different sequences |
| Number of true positive hits | 119 in 119 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 7 in 7 different sequences |
| Number of false negative sequences | 48 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 94.44 % |
| Recall (true positives / (true positives + false negatives)) | 71.26 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
119 sequences
ACAD1_CAEBR (A8XNF0), ACAD8_DICDI (Q54IM8), ACAD9_HUMAN (Q9H845), ACAD9_MOUSE (Q8JZN5), ACAD9_RAT (B1WC61), ACADL_HUMAN (P28330), ACADL_MACFA (Q60HI0), ACADL_MOUSE (P51174), ACADL_PIG (P79274), ACADL_RAT (P15650), ACADM_BOVIN (Q3SZB4), ACADM_CAEEL (Q22347), ACADM_DROME (Q9VSA3), ACADM_HUMAN (P11310), ACADM_MACFA (Q8HXY8), ACADM_MOUSE (P45952), ACADM_PANTR (A5A6I0), ACADM_PIG (P41367), ACADM_RAT (P08503), ACADS_BOVIN (Q3ZBF6), ACADS_HUMAN (P16219), ACADS_MOUSE (Q07417), ACADS_PIG (P79273), ACADS_PONAB (Q5RAS0), ACADS_RAT (P15651), ACADV_BOVIN (P48818), ACADV_HUMAN (P49748), ACADV_MACFA (Q8HXY7), ACADV_MOUSE (P50544), ACADV_RAT (P45953), ACDA_BACSU (P45867), ACDA_CLOS1 (J7TF92), ACDB_BACSU (P45857), ACDC_BACSU (O34421), ACDP_MYCBO (P63428), ACDP_MYCLE (P46703), ACDP_MYCTO (P9WQG0), ACDP_MYCTU (P9WQG1), ACDSB_HUMAN (P45954), ACDSB_MOUSE (Q9DBL1), ACDSB_PONAB (Q5RF40), ACDSB_RAT (P70584), ACDS_CLOAB (P52042), ACDS_MEGEL (Q06319), ACOX4_ARATH (Q96329), ACRC_ANAPI (G3KIM8), AIDB_ECOLI (P33224), CAIA_CITK8 (A8ALR4), CAIA_ECO24 (A7ZHD0), CAIA_ECO27 (B7UI85), CAIA_ECO45 (B7MAG2), CAIA_ECO55 (B7L4G2), CAIA_ECO57 (P60586), CAIA_ECO5E (B5YYD3), CAIA_ECO7I (B7NHE3), CAIA_ECO81 (B7MNP6), CAIA_ECO8A (B7M0D6), CAIA_ECOBW (C4ZPW5), CAIA_ECODH (B1XBG4), CAIA_ECOHS (A7ZVY9), CAIA_ECOK1 (A1A789), CAIA_ECOL5 (Q0TLV0), CAIA_ECOL6 (P60585), CAIA_ECOLC (B1IRD7), CAIA_ECOLI (P60584), CAIA_ECOLU (B7N7R4), CAIA_ECOSE (B6HYZ0), CAIA_ECOSM (B1LFX2), CAIA_ECOUT (Q1RGF9), CAIA_ESCF3 (B7LWN0), CAIA_PROMH (B4EY23), CAIA_PROSL (Q8GB20), CAIA_SALA4 (B5F752), CAIA_SALAR (A9MQH5), CAIA_SALCH (Q57TI8), CAIA_SALDC (B5FHG7), CAIA_SALEP (B5R1R2), CAIA_SALG2 (B5RGA6), CAIA_SALHS (B4TIH2), CAIA_SALNS (B4T6J8), CAIA_SALPA (Q5PIN6), CAIA_SALPB (A9MYJ9), CAIA_SALPC (C0Q4L5), CAIA_SALPK (B5BL57), CAIA_SALSV (B4TWR6), CAIA_SALTI (Q8Z9L2), CAIA_SALTY (Q8ZRX2), CAIA_SHIDS (Q32K58), CAIA_SHIF8 (Q0T8F5), CAIA_SHIFL (P60587), CAIA_SHISS (Q3Z5W9), CARC_ACEWD (H6LGM6), CH1CO_GEOMG (Q39QF5), CH1CO_SYNAS (Q2LQN9), CHCOA_GEOMG (Q39QF4), CHCOA_SYNAS (Q2LQP0), FADE_BACSU (O32176), GCDH_BOVIN (Q2KHZ9), GCDH_CAEEL (Q20772), GCDH_DICDI (Q54R47), GCDH_HUMAN (Q92947), GCDH_MACFA (Q8HXX8), GCDH_MOUSE (Q60759), GCDH_PIG(P81140), IVD_ARATH (Q9SWG0), IVD_BOVIN (Q3SZI8), IVD_CAEEL (P34275), IVD_HUMAN (P26440), IVD_MOUSE (Q9JHI5), IVD_ORYSJ (Q75IM9), IVD_PONAB (Q5RBD5), IVD_RAT (P12007), IVD_SOLTU (Q9FS87), MBCD_SOLTU (Q9FS88), MCD_CERSP (D3JV03), SPCAD_VARPD (B9U6P5), YDIO_ECO57 (P0A9V0), YDIO_ECOL6 (P0A9U9), YDIO_ECOLI (P0A9U8)» more
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| UniProtKB/Swiss-Prot False negative sequences |
48 sequences
ACAD8_BOVIN (Q0NXR6), ACAD8_HUMAN (Q9UKU7), ACAD8_MOUSE (Q9D7B6), ACD10_HUMAN (Q6JQN1), ACD10_MOUSE (Q8K370), ACD17_MYCTU (P95280), ACD2_MYCTU (P96831), ACDC_MYCBO (Q7U0Y2), ACDC_MYCTO (P9WQG2), ACDC_MYCTU (P9WQG3), ACDSB_BOVIN (Q5EAD4), ACDSB_DICDI (Q54RR5), ACD_DESML (C3UVB0), BBSG_THAAR (Q9KJE8), CHSE1_MYCTU (P71857), CHSE2_MYCTU (P71858), CHSE3_MYCTU (P96855), CHSE4_MYCTU (I6YCA3), CHSE5_MYCTU (I6Y3Q0), FADE5_MYCS2 (Q3L887), FADE5_MYCTU (O53666), FADE_ECO57 (Q8X7R2), FADE_ECOLI (Q47146), FADE_SALTI (Q8Z937), FADE_SALTY (Q8ZRJ7), FADE_YERPE (Q8ZBY6), IAAF_AROAE (Q5P5Z9), IPDE1_MYCS2 (A0R4Z9), IPDE1_MYCTU (I6Y3V5), IPDE2_MYCS2 (A0R502), IPDE2_MYCTU (I6YCF5), MBTN_MYCBO (P63432), MBTN_MYCPA (Q73ZP8), MBTN_MYCSS (Q1BBA3), MBTN_MYCTO (P9WQF8), MBTN_MYCTU (P9WQF9), NAO_FUSOX (Q8X1D8), NITSS_MICS3 (C4RPA1), NITSS_STRPE (A0A0R4I990), NITSS_STRRR (Q2PC69), PIGA_SERS3 (Q5W271), SPCAD_ADVMD (K4L7X3), SPCAD_CUPNN (F8GVD3), SPCAD_PARXL (Q13PC1), Y873_MYCTO (P9WQF6), Y873_MYCTU (P9WQF7), Y897_MYCBO (P63430), YDBM_BACSU (P96608)» more |
| UniProtKB/Swiss-Prot False positive sequences |
7 sequences
EIF3J_KLULA (Q6CMJ8), LAMB_SERP5 (A8GKC3), NCAP_ISAV8 (Q8V3T7), PP392_ARATH (Q3E9F0), PPR18_ARATH (Q9M9X9), SMAX1_ARATH (Q9FHH2), SYL_EHRCR (Q2GG41)» more |
| PDB [Detailed view] |
38 PDB
1BUC; 1EGC; 1EGD; 1EGE; 1IVH; 1JQI; 1SIQ; 1SIR; 1T9G; 1UDY; 2A1T; 2IX5; 2IX6; 2JIF; 2R0M; 2R0N; 2UXW; 2VIG; 3B96; 3DJL; 3MDD; 3MDE; 3U33; 4P13; 5LNX; 6FAH; 7P98; 7P9A; 7P9X; 7S7G; 7Y0A; 7Y0B; 8CA1; 8PHE; 8PHF; 8SGP; 8SGR; 8SGS » more |