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PROSITE entry PS00073


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General information about the entry

Entry name [info] ACYL_COA_DH_2
Accession [info] PS00073
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00070

Name and characterization of the entry

Description [info] Acyl-CoA dehydrogenases signature 2.
Pattern [info]
[QDE]-x-{P}-G-[GS]-x-G-[LIVMFY]-x(2)-[DEN]-x(4)-[KR]-x(3)-[DEN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 124 in 124 different sequences
Number of true positive hits 117 in 117 different sequences
Number of 'unknown' hits 0
Number of false positive hits 7 in 7 different sequences
Number of false negative sequences 48
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.35 %
Recall (true positives / (true positives + false negatives)) 70.91 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
117 sequences

ACAD1_CAEBR (A8XNF0), ACAD8_DICDI (Q54IM8), ACAD9_HUMAN (Q9H845), 
ACAD9_MOUSE (Q8JZN5), ACAD9_RAT   (B1WC61), ACADL_HUMAN (P28330), 
ACADL_MACFA (Q60HI0), ACADL_MOUSE (P51174), ACADL_PIG   (P79274), 
ACADL_RAT   (P15650), ACADM_BOVIN (Q3SZB4), ACADM_CAEEL (Q22347), 
ACADM_DROME (Q9VSA3), ACADM_HUMAN (P11310), ACADM_MACFA (Q8HXY8), 
ACADM_MOUSE (P45952), ACADM_PANTR (A5A6I0), ACADM_PIG   (P41367), 
ACADM_RAT   (P08503), ACADS_BOVIN (Q3ZBF6), ACADS_HUMAN (P16219), 
ACADS_MOUSE (Q07417), ACADS_PIG   (P79273), ACADS_PONAB (Q5RAS0), 
ACADS_RAT   (P15651), ACADV_BOVIN (P48818), ACADV_HUMAN (P49748), 
ACADV_MACFA (Q8HXY7), ACADV_MOUSE (P50544), ACADV_RAT   (P45953), 
ACDA_BACSU  (P45867), ACDA_CLOS1  (J7TF92), ACDB_BACSU  (P45857), 
ACDC_BACSU  (O34421), ACDP_MYCBO  (P63428), ACDP_MYCLE  (P46703), 
ACDP_MYCTO  (P9WQG0), ACDP_MYCTU  (P9WQG1), ACDSB_HUMAN (P45954), 
ACDSB_MOUSE (Q9DBL1), ACDSB_PONAB (Q5RF40), ACDSB_RAT   (P70584), 
ACDS_CLOAB  (P52042), ACDS_MEGEL  (Q06319), ACOX4_ARATH (Q96329), 
ACRC_ANAPI  (G3KIM8), AIDB_ECOLI  (P33224), CAIA_CITK8  (A8ALR4), 
CAIA_ECO24  (A7ZHD0), CAIA_ECO27  (B7UI85), CAIA_ECO45  (B7MAG2), 
CAIA_ECO55  (B7L4G2), CAIA_ECO57  (P60586), CAIA_ECO5E  (B5YYD3), 
CAIA_ECO7I  (B7NHE3), CAIA_ECO81  (B7MNP6), CAIA_ECO8A  (B7M0D6), 
CAIA_ECOBW  (C4ZPW5), CAIA_ECODH  (B1XBG4), CAIA_ECOHS  (A7ZVY9), 
CAIA_ECOK1  (A1A789), CAIA_ECOL5  (Q0TLV0), CAIA_ECOL6  (P60585), 
CAIA_ECOLC  (B1IRD7), CAIA_ECOLI  (P60584), CAIA_ECOLU  (B7N7R4), 
CAIA_ECOSE  (B6HYZ0), CAIA_ECOSM  (B1LFX2), CAIA_ECOUT  (Q1RGF9), 
CAIA_ESCF3  (B7LWN0), CAIA_PROMH  (B4EY23), CAIA_PROSL  (Q8GB20), 
CAIA_SALA4  (B5F752), CAIA_SALAR  (A9MQH5), CAIA_SALCH  (Q57TI8), 
CAIA_SALDC  (B5FHG7), CAIA_SALEP  (B5R1R2), CAIA_SALG2  (B5RGA6), 
CAIA_SALHS  (B4TIH2), CAIA_SALNS  (B4T6J8), CAIA_SALPA  (Q5PIN6), 
CAIA_SALPB  (A9MYJ9), CAIA_SALPC  (C0Q4L5), CAIA_SALPK  (B5BL57), 
CAIA_SALSV  (B4TWR6), CAIA_SALTI  (Q8Z9L2), CAIA_SALTY  (Q8ZRX2), 
CAIA_SHIDS  (Q32K58), CAIA_SHIF8  (Q0T8F5), CAIA_SHIFL  (P60587), 
CAIA_SHISS  (Q3Z5W9), CARC_ACEWD  (H6LGM6), CH1CO_SYNAS (Q2LQN9), 
CHCOA_SYNAS (Q2LQP0), FADE_BACSU  (O32176), GCDH_BOVIN  (Q2KHZ9), 
GCDH_CAEEL  (Q20772), GCDH_DICDI  (Q54R47), GCDH_HUMAN  (Q92947), 
GCDH_MACFA  (Q8HXX8), GCDH_MOUSE  (Q60759), GCDH_PIG(P81140), 
IVD_ARATH   (Q9SWG0), IVD_BOVIN   (Q3SZI8), IVD_CAEEL   (P34275), 
IVD_HUMAN   (P26440), IVD_MOUSE   (Q9JHI5), IVD_ORYSJ   (Q75IM9), 
IVD_PONAB   (Q5RBD5), IVD_RAT (P12007), IVD_SOLTU   (Q9FS87), 
MBCD_SOLTU  (Q9FS88), MCD_CERSP   (D3JV03), SPCAD_VARPD (B9U6P5), 
YDIO_ECO57  (P0A9V0), YDIO_ECOL6  (P0A9U9), YDIO_ECOLI  (P0A9U8)
» more

UniProtKB/Swiss-Prot
False negative sequences
48 sequences

ACAD8_BOVIN (Q0NXR6), ACAD8_HUMAN (Q9UKU7), ACAD8_MOUSE (Q9D7B6), 
ACD10_HUMAN (Q6JQN1), ACD10_MOUSE (Q8K370), ACD17_MYCTU (P95280), 
ACD2_MYCTU  (P96831), ACDC_MYCBO  (Q7U0Y2), ACDC_MYCTO  (P9WQG2), 
ACDC_MYCTU  (P9WQG3), ACDSB_BOVIN (Q5EAD4), ACDSB_DICDI (Q54RR5), 
ACD_DESML   (C3UVB0), BBSG_THAAR  (Q9KJE8), CHSE1_MYCTU (P71857), 
CHSE2_MYCTU (P71858), CHSE3_MYCTU (P96855), CHSE4_MYCTU (I6YCA3), 
CHSE5_MYCTU (I6Y3Q0), FADE5_MYCS2 (Q3L887), FADE5_MYCTU (O53666), 
FADE_ECO57  (Q8X7R2), FADE_ECOLI  (Q47146), FADE_SALTI  (Q8Z937), 
FADE_SALTY  (Q8ZRJ7), FADE_YERPE  (Q8ZBY6), IAAF_AROAE  (Q5P5Z9), 
IPDE1_MYCS2 (A0R4Z9), IPDE1_MYCTU (I6Y3V5), IPDE2_MYCS2 (A0R502), 
IPDE2_MYCTU (I6YCF5), MBTN_MYCBO  (P63432), MBTN_MYCPA  (Q73ZP8), 
MBTN_MYCSS  (Q1BBA3), MBTN_MYCTO  (P9WQF8), MBTN_MYCTU  (P9WQF9), 
NAO_FUSOX   (Q8X1D8), NITSS_MICS3 (C4RPA1), NITSS_STRPE (A0A0R4I990), 
NITSS_STRRR (Q2PC69), PIGA_SERS3  (Q5W271), SPCAD_ADVMD (K4L7X3), 
SPCAD_CUPNN (F8GVD3), SPCAD_PARXL (Q13PC1), Y873_MYCTO  (P9WQF6), 
Y873_MYCTU  (P9WQF7), Y897_MYCBO  (P63430), YDBM_BACSU  (P96608)
» more

UniProtKB/Swiss-Prot
False positive sequences
7 sequences

EIF3J_KLULA (Q6CMJ8), LAMB_SERP5  (A8GKC3), NCAP_ISAV8  (Q8V3T7), 
PP392_ARATH (Q3E9F0), PPR18_ARATH (Q9M9X9), SMAX1_ARATH (Q9FHH2), 
SYL_EHRCR   (Q2GG41)
» more

PDB
[Detailed view]
35 PDB

1BUC; 1EGC; 1EGD; 1EGE; 1IVH; 1JQI; 1SIQ; 1SIR; 1T9G; 1UDY; 2A1T; 2IX5; 2IX6; 2JIF; 2R0M; 2R0N; 2UXW; 2VIG; 3B96; 3DJL; 3MDD; 3MDE; 3U33; 4P13; 5LNX; 6FAH; 7S7G; 7Y0A; 7Y0B; 8CA1; 8PHE; 8PHF; 8SGP; 8SGR; 8SGS
» more