PROSITE entry PS00082

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PURL: https://purl.expasy.org/prosite/signature/PS00082

Direct ScanProsite submission

General information about the entry

Entry name [info]	EXTRADIOL_DIOXYGENAS
Accession [info]	PS00082
Entry type [info]	PATTERN
Date [info]	01-APR-1990 CREATED; 01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00078

Name and characterization of the entry

Description [info]	Extradiol ring-cleavage dioxygenases signature.
Pattern [info]	[GNTIV]-x-H-x(5,7)-[LIVMF]-Y-x(2)-[DENTA]-P-x-[GP]-x(2,3)-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	29 in 29 different sequences
Number of true positive hits	26 in 26 different sequences
Number of 'unknown' hits	0
Number of false positive hits	3 in 3 different sequences
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	89.66 %
Recall (true positives / (true positives + false negatives))	86.67 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Site [info]	iron at position 13
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	26 sequences BPHC1_RHOGO (P47231), BPHC2_RHOGO (P47232), BPHC3_RHOGO (P47233), BPHC_METFU (P08695), BPHC_PARXL (P47228), BPHC_PSES1 (P17297), BPHC_SPHPI (P11122), CADE_BACSU (P54721), CATA_RHORH (Q53034), DBFB_SPHPI (P47243), DMPB_PSEUF (P17262), HSAC_MYCTO (P9WNW6), HSAC_MYCTU (P9WNW7), HSAC_RHOJR (Q9KWQ5), MPC2_CUPNE (P17296), NAHC1_PSEPU (P11861), NAHC2_PSEPU (P0A109), NAHC_PSEAI (P0A107), NAHC_PSEU8 (P0A108), NAHH_PSEPU (P08127), NSAC_SPHXE (P74836), PHEB_GEOSE (P31003), TODE_PSEP1 (P13453), XYLE1_PSEPU (P06622), XYLE2_PSEPU (Q04285), XYLE_PSEAI (P27887) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	4 sequences LINE_SPHIU (Q9WXE6), MHQA_BACSU (O34689), MHQE_BACSU (O34543), MHQO_BACSU (P96693) » more
UniProtKB/Swiss-Prot False positive sequences	3 sequences BAME_NITEU (Q82WP8), GLGB3_ARATH (D2WL32), GRF8_ARATH (Q9SU44)
PDB [Detailed view]	24 PDB 1DHY; 1EIL; 1EIQ; 1EIR; 1HAN; 1KMY; 1KND; 1KNF; 1KW3; 1KW6; 1KW8; 1KW9; 1KWB; 1KWC; 1LGT; 1LKD; 1MPY; 2EHZ; 2EI0; 2EI1; 2EI2; 2EI3; 2ZI8; 2ZYQ » more