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PROSITE entry PS00082


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General information about the entry

Entry name [info] EXTRADIOL_DIOXYGENAS
Accession [info] PS00082
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00078

Name and characterization of the entry

Description [info] Extradiol ring-cleavage dioxygenases signature.
Pattern [info] 
[GNTIV]-x-H-x(5,7)-[LIVMF]-Y-x(2)-[DENTA]-P-x-[GP]-x(2,3)-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 29 in 29 different sequences
Number of true positive hits 26 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 89.66 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron at position 13
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 26 sequences 

BPHC1_RHOGO (P47231), BPHC2_RHOGO (P47232), BPHC3_RHOGO (P47233), 

BPHC_PARXL  (P47228), BPHC_PSEFK  (P08695), BPHC_PSES1  (P17297), 
BPHC_SPHPI  (P11122), CADE_BACSU  (P54721), CATA_RHORH  (Q53034), 
DBFB_SPHPI  (P47243), DMPB_PSEUF  (P17262), HSAC_MYCTO  (P9WNW6), 
HSAC_MYCTU  (P9WNW7), HSAC_RHOJR  (Q9KWQ5), MPC2_CUPNE  (P17296), 
NAHC1_PSEPU (P11861), NAHC2_PSEPU (P0A109), NAHC_PSEAI  (P0A107), 
NAHC_PSEU8  (P0A108), NAHH_PSEPU  (P08127), NSAC_SPHXE  (P74836), 
PHEB_GEOSE  (P31003), TODE_PSEP1  (P13453), XYLE1_PSEPU (P06622), 
XYLE2_PSEPU (Q04285), XYLE_PSEAI  (P27887)
» more

UniProtKB/Swiss-Prot
False negative sequences		 4 sequences 

LINE_SPHIU  (Q9WXE6), MHQA_BACSU  (O34689), MHQE_BACSU  (O34543), 

MHQO_BACSU  (P96693)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

BAME_NITEU  (Q82WP8), GLGB3_ARATH (D2WL32), GRF8_ARATH  (Q9SU44)


				
	

	

		PDB
[Detailed view]		
		
			24 PDB
			


			1DHY; 1EIL; 1EIQ; 1EIR; 1HAN; 1KMY; 1KND; 1KNF; 1KW3; 1KW6; 1KW8; 1KW9; 
			
				1KWB; 1KWC; 1LGT; 1LKD; 1MPY; 2EHZ; 2EI0; 2EI1; 2EI2; 2EI3; 2ZI8; 2ZYQ
			
			

			» more