PROSITE entry PS00087
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Direct ScanProsite submission
General information about the entry
| Entry name [info] | SOD_CU_ZN_1 |
| Accession [info] | PS00087 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00082 |
Name and characterization of the entry
| Description [info] | Copper/Zinc superoxide dismutase signature 1. |
| Pattern [info] |
[GA]-[IMFAT]-H-[LIVF]-H-{S}-x-[GP]-[SDG]-x-[STAGDE].
|
Numerical results [info]
| Total number of hits | 182 in 182 different sequences |
| Number of true positive hits | 154 in 154 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 28 in 28 different sequences |
| Number of false negative sequences | 27 |
| Number of 'partial' sequences | 11 |
| Precision (true positives / (true positives + false positives)) | 84.62 % |
| Recall (true positives / (true positives + false negatives)) | 85.08 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | copper at position 3 |
| Site [info] | copper at position 5 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
154 sequences
SOD1A_XENLA (P13926), SOD1B_XENLA (P15107), SODA_TALMA (Q19VG9), SODA_TALMQ (B6QEB3), SODC1_ARATH (P24704), SODC1_BRAJU (Q42611), SODC1_DEBHA (O42724), SODC1_DICDI (Q55GQ5), SODC1_MESCR (P93258), SODC1_ORYSI (A2XGP6), SODC1_ORYSJ (Q0DRV6), SODC1_SOLLC (P14830), SODC2_ARATH (O78310), SODC2_BRAJU (Q42612), SODC2_DICDI (Q54RN1), SODC2_MAIZE (P11428), SODC2_MESCR (O49044), SODC2_OLEEU (Q8L5E0), SODC2_ORYSJ (P28757), SODC2_SOLLC (Q43779), SODC3_DICDI (Q54RQ1), SODC4_DICDI (Q54TU5), SODC4_MAIZE (P23345), SODC5_DICDI (Q54G70), SODC5_MAIZE (P23346), SODC6_DICDI (Q54TW8), SODCP_MEDSA (O65198), SODCP_ORYSJ (P93407), SODCP_PEA (P11964), SODCP_PETHY (P10792), SODCP_PINSY (P24707), SODCP_SOLCS (O04997), SODCP_SOLLC (P14831), SODCP_SPIOL (P07505), SODCP_VITVI (O65199), SODCP_ZANAE (O65175), SODC_ACTPL (P24702), SODC_ANACO (Q9SQL5), SODC_ASPFL (Q8X1S6), SODC_ASPFU (Q9Y8D9), SODC_ASPJA (Q12548), SODC_ASPNC (A2QMY6), SODC_ASPNG (P85978), SODC_ASPOR (Q877B5), SODC_BOMMO (P82205), SODC_BOSMU (Q52RN5), SODC_BOTFU (Q70Q35), SODC_BOVIN (P00442), SODC_BRAOC (P09678), SODC_BRUAB (P15453), SODC_BRUME (P66826), SODC_BRUPA (P41962), SODC_BRUSU (P66827), SODC_CAEBR (A8XCP3), SODC_CAEEL (P34697), SODC_CALJA (Q8HXP8), SODC_CAMDR (H6BDU4), SODC_CANAX (O59924), SODC_CANGA (Q6FWL5), SODC_CAPAN (O22373), SODC_CAPHI (Q5FB29), SODC_CARCR (P80174), SODC_CARPA (O65768), SODC_CAUVC (P20379), SODC_CAVPO (P33431), SODC_CERCA (P28755), SODC_CEREL (O46412), SODC_CHICK (P80566), SODC_CHYAM (Q07182), SODC_CLAP2 (Q96VL0), SODC_COLGL (O94178), SODC_CORMI (Q8J0N2), SODC_CORTN (Q8J0N3), SODC_CRYGA (Q9C0N4), SODC_CRYNH (J9VLJ9), SODC_DANRE (O73872), SODC_DROBS (P54407), SODC_DROER (Q9U4X4), SODC_DROMA (P61853), SODC_DROMD (Q95081), SODC_DROME (P61851), SODC_DROMI (Q95079), SODC_DROOB (Q95085), SODC_DROOR (Q9U4X5), SODC_DROPB (Q95087), SODC_DROPE (Q95088), SODC_DROPS (Q95086), SODC_DROSE (P61854), SODC_DROSI (P61852), SODC_DROTE (Q9U4X2), SODC_DROVI (P10791), SODC_DROWI (P41973), SODC_DROYA (Q9U4X3), SODC_EMENI (Q9HEY7), SODC_EREGS (Q751L8), SODC_FRATH (Q59448), SODC_HAECO (Q27666), SODC_HAEDU (Q59452), SODC_HAEPA (P25842), SODC_HALRO (P81926), SODC_HORSE (P00443), SODC_HUMAN (P00441), SODC_HUMLT (P83684), SODC_HYLLA (Q8HXQ3), SODC_IPOBA (Q07796), SODC_KLULA (Q6CPE2), SODC_LAMCR (P81036), SODC_MACFA (Q8HXQ1), SODC_MACFU (Q8HXQ2), SODC_MACMU (Q8HXQ0), SODC_MOUSE (P08228), SODC_NEIMA (P57005), SODC_NEIMB (Q59623), SODC_NEUCR (P07509), SODC_NICPL (P27082), SODC_NPVAC (P24705), SODC_NPVOP (O12933), SODC_ONCVO (P24706), SODC_PANGI (O22668), SODC_PANTR (P60052), SODC_PASMU (Q59689), SODC_PAUKA (O49073), SODC_PBCV1 (Q90023), SODC_PEA(Q02610), SODC_PHOLE (P00446), SODC_PIG(P04178), SODC_PINSY (P24669), SODC_PODAS (Q711T9), SODC_PONPY (Q8HXQ4), SODC_PRIGL (P11418), SODC_RAT(P07632), SODC_SAPAP (Q8HXP9), SODC_SCHMA (Q01137), SODC_SCHPO (P28758), SODC_SHEEP (P09670), SODC_SOLCS (O04996), SODC_SOYBN (Q7M1R5), SODC_SPIOL (P22233), SODC_XENTR (Q0IIW3), SODC_XIPGL (P03946), SODC_YARLI (Q6C662), SODC_YEAST (P00445), SODC_ZANAE (O65174), SODC_ZINOF (C0HK70), SODE_BRUPA (P41963), SODE_CAEEL (P34461), SODE_DROME (Q7JR71), SODE_HAECO (P51547), SODE_HUMAN (P08294), SODE_MOUSE (O09164), SODE_ONCVO (Q07449), SODE_RABIT (P41975), SODE_RAT(Q08420), SODE_SCHMA (P16026)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
27 sequences
CCS1_DEBHA (Q6BK66), CCS_DICDI (Q54F73), CCS_HUMAN (O14618), CCS_MOUSE (Q9WU84), CCS_PIG (Q6PWT7), CCS_RAT (Q9JK72), SODC1_AQUAE (O67149), SODC1_SALT4 (E8XDJ8), SODC1_SALTY (P0CW86), SODC2_AQUAE (O66602), SODCP_POPTM (P36214), SODC_DEIRA (Q9RU48), SODC_DROTO (Q95095), SODC_ECO57 (P0AGD2), SODC_ECOLI (P0AGD1), SODC_HAEIF (P25841), SODC_LEGPH (Q5ZT17), SODC_LEGPN (P69049), SODC_MYCBO (P0A609), SODC_MYCLE (Q9CBI6), SODC_MYCPA (Q9AGW2), SODC_MYCTO (P9WGE8), SODC_MYCTU (P9WGE9), SODC_RABIT (P09212), SODC_SALTY (O68901), SODE_DIRIM (P41974), YOJM_BACSU (O31851)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
11 sequences
SODC1_OLEEU (P80740), SODC2_DEBHN (P82902), SODC2_PICAB (P29428), SODCP_PICAB (P29427), SODCP_PINPS (P81082), SODC_AGGAC (Q59081), SODC_AQUCT (P23417), SODC_HORVU (P34936), SODC_MANHA (Q51853), SODC_PAROL (P83129), SODC_STRHE (P81163)» more |
| UniProtKB/Swiss-Prot False positive sequences |
28 sequences
BURS_PERAM (P84118), CYSA_STRCO (Q59829), FABH_BORBR (Q7WD20), FABH_BORPA (Q7W5I4), FABH_BORPE (Q7VW29), GYRB_PSEPU (P13364), HUTI_DEIRA (Q9RZ05), RPOC_CHLL2 (B3EER3), SYA_BURA4 (B1YNJ6), SYA_BURCH (A0K6N4), SYA_BURCM (Q0BG79), SYA_BURM7 (A3MJ36), SYA_BURM9 (A2S3D4), SYA_BURMA (Q62KZ3), SYA_BURMS (A1V3F2), SYA_BURO0 (B1K026), SYA_BURO1 (Q1BX19), SYA_BURP0 (A3NUB0), SYA_BURP1 (Q3JT87), SYA_BURP6 (A3N8K7), SYA_BURPS (Q63TF9), SYA_BURTA (Q2SV73), SYA_CUPNH (Q0K823), SYA_CUPPJ (Q474F4), SYA_GEOSL (P61701), SYA_METTH (O27718), SYA_PARPJ (B2SZN0), SYA_PARXL (Q13W97)» more |
| PDB [Detailed view] |
174 PDB
1AZV; 1B4L; 1BZO; 1CB4; 1CBJ; 1COB; 1E9O; 1E9P; 1E9Q; 1F18; 1F1G; 1FUN; 1HL4; 1HL5; 1IB5; 1IBB; 1IBD; 1IBF; 1IBH; 1JCV; 1L3N; 1N18; 1N19; 1OAJ; 1OAL; 1OZU; 1P1V; 1PTZ; 1PU0; 1Q0E; 1SDA; 1SDY; 1SOS; 1SPD; 1SRD; 1SXA; 1SXB; 1SXC; 1SXN; 1SXS; 1SXZ; 1TO4; 1TO5; 1UXL; 1UXM; 1XSO; 1YAI; 1YAZ; 1YSO; 1Z9N; 1Z9P; 2AEO; 2AF2; 2APS; 2AQN; 2AQP; 2AQQ; 2AQR; 2AQS; 2AQT; 2C9S; 2C9U; 2C9V; 2GBT; 2GBU; 2GBV; 2JCW; 2JLP; 2LU5; 2MP3; 2NAM; 2R27; 2SOD; 2V0A; 2VR6; 2VR7; 2VR8; 2WKO; 2WYT; 2WYZ; 2WZ0; 2WZ5; 2WZ6; 2Z7U; 2Z7W; 2Z7Y; 2Z7Z; 2ZKW; 2ZKX; 2ZKY; 2ZOW; 3CQP; 3CQQ; 3ECU; 3ECV; 3GTT; 3GTV; 3GZO; 3GZP; 3GZQ; 3H2P; 3H2Q; 3HOG; 3HW7; 3KBE; 3KBF; 3KH3; 3KH4; 3KM1; 3KM2; 3L9E; 3L9Y; 3LTV; 3MKG; 3PU7; 3QQD; 3RE0; 3S0P; 3SOD; 3T5W; 4A7G; 4A7Q; 4A7S; 4A7T; 4A7U; 4A7V; 4B3E; 4FF9; 4L05; 4MCM; 4MCN; 4OH2; 5IN2; 5K02; 5O3Y; 5O40; 5YTO; 5YTU; 5YUL; 6A9O; 6DTK; 6FFK; 6FOI; 6FOL; 6FON; 6FP6; 6SPA; 6SPH; 6SPI; 6SPJ; 6SPK; 6Z3V; 6Z4G; 6Z4H; 6Z4I; 6Z4J; 6Z4K; 6Z4L; 6Z4M; 6Z4O; 7FB6; 7FB9; 7NXX; 7T8E; 7T8F; 7T8G; 7T8H; 7VZF; 7XX3; 8CCX; 8GSQ; 8IQ0; 8IQ1; 8Q6M » more |