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PROSITE entry PS00087


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General information about the entry

Entry name [info] SOD_CU_ZN_1
Accession [info] PS00087
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00082

Name and characterization of the entry

Description [info] Copper/Zinc superoxide dismutase signature 1.
Pattern [info] 
[GA]-[IMFAT]-H-[LIVF]-H-{S}-x-[GP]-[SDG]-x-[STAGDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 180 in 180 different sequences
Number of true positive hits 152 in 152 different sequences
Number of 'unknown' hits 0
Number of false positive hits 28 in 28 different sequences
Number of false negative sequences 27
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 84.44 %
Recall (true positives / (true positives + false negatives)) 84.92 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] copper at position 3
Site [info] copper at position 5
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 152 sequences 

SOD1A_XENLA (P13926), SOD1B_XENLA (P15107), SODC1_ARATH (P24704), 

SODC1_BRAJU (Q42611), SODC1_DEBHA (O42724), SODC1_DICDI (Q55GQ5), 
SODC1_MESCR (P93258), SODC1_ORYSI (A2XGP6), SODC1_ORYSJ (Q0DRV6), 
SODC1_SOLLC (P14830), SODC2_ARATH (O78310), SODC2_BRAJU (Q42612), 
SODC2_DICDI (Q54RN1), SODC2_MAIZE (P11428), SODC2_MESCR (O49044), 
SODC2_OLEEU (Q8L5E0), SODC2_ORYSJ (P28757), SODC2_SOLLC (Q43779), 
SODC3_DICDI (Q54RQ1), SODC4_DICDI (Q54TU5), SODC4_MAIZE (P23345), 
SODC5_DICDI (Q54G70), SODC5_MAIZE (P23346), SODC6_DICDI (Q54TW8), 
SODCP_MEDSA (O65198), SODCP_ORYSJ (P93407), SODCP_PEA   (P11964), 
SODCP_PETHY (P10792), SODCP_PINSY (P24707), SODCP_SOLCS (O04997), 
SODCP_SOLLC (P14831), SODCP_SPIOL (P07505), SODCP_VITVI (O65199), 
SODCP_ZANAE (O65175), SODC_ACTPL  (P24702), SODC_ANACO  (Q9SQL5), 
SODC_ASPFL  (Q8X1S6), SODC_ASPFU  (Q9Y8D9), SODC_ASPJA  (Q12548), 
SODC_ASPNC  (A2QMY6), SODC_ASPNG  (P85978), SODC_ASPOR  (Q877B5), 
SODC_BOMMO  (P82205), SODC_BOSMU  (Q52RN5), SODC_BOTFU  (Q70Q35), 
SODC_BOVIN  (P00442), SODC_BRAOC  (P09678), SODC_BRUAB  (P15453), 
SODC_BRUME  (P66826), SODC_BRUPA  (P41962), SODC_BRUSU  (P66827), 
SODC_CAEBR  (A8XCP3), SODC_CAEEL  (P34697), SODC_CALJA  (Q8HXP8), 
SODC_CAMDR  (H6BDU4), SODC_CANAX  (O59924), SODC_CANGA  (Q6FWL5), 
SODC_CAPAN  (O22373), SODC_CAPHI  (Q5FB29), SODC_CARCR  (P80174), 
SODC_CARPA  (O65768), SODC_CAUVC  (P20379), SODC_CAVPO  (P33431), 
SODC_CERCA  (P28755), SODC_CEREL  (O46412), SODC_CHICK  (P80566), 
SODC_CHYAM  (Q07182), SODC_CLAP2  (Q96VL0), SODC_COLGL  (O94178), 
SODC_CORMI  (Q8J0N2), SODC_CORTN  (Q8J0N3), SODC_CRYGA  (Q9C0N4), 
SODC_CRYNH  (J9VLJ9), SODC_DANRE  (O73872), SODC_DROBS  (P54407), 
SODC_DROER  (Q9U4X4), SODC_DROMA  (P61853), SODC_DROMD  (Q95081), 
SODC_DROME  (P61851), SODC_DROMI  (Q95079), SODC_DROOB  (Q95085), 
SODC_DROOR  (Q9U4X5), SODC_DROPB  (Q95087), SODC_DROPE  (Q95088), 
SODC_DROPS  (Q95086), SODC_DROSE  (P61854), SODC_DROSI  (P61852), 
SODC_DROTE  (Q9U4X2), SODC_DROVI  (P10791), SODC_DROWI  (P41973), 
SODC_DROYA  (Q9U4X3), SODC_EMENI  (Q9HEY7), SODC_EREGS  (Q751L8), 
SODC_FRATH  (Q59448), SODC_HAECO  (Q27666), SODC_HAEDU  (Q59452), 
SODC_HAEPA  (P25842), SODC_HALRO  (P81926), SODC_HORSE  (P00443), 
SODC_HUMAN  (P00441), SODC_HUMLT  (P83684), SODC_HYLLA  (Q8HXQ3), 
SODC_IPOBA  (Q07796), SODC_KLULA  (Q6CPE2), SODC_LAMCR  (P81036), 
SODC_MACFA  (Q8HXQ1), SODC_MACFU  (Q8HXQ2), SODC_MACMU  (Q8HXQ0), 
SODC_MOUSE  (P08228), SODC_NEIMA  (P57005), SODC_NEIMB  (Q59623), 
SODC_NEUCR  (P07509), SODC_NICPL  (P27082), SODC_NPVAC  (P24705), 
SODC_NPVOP  (O12933), SODC_ONCVO  (P24706), SODC_PANGI  (O22668), 
SODC_PANTR  (P60052), SODC_PASMU  (Q59689), SODC_PAUKA  (O49073), 
SODC_PBCV1  (Q90023), SODC_PEA(Q02610), SODC_PHOLE  (P00446), 
SODC_PIG(P04178), SODC_PINSY  (P24669), SODC_PODAS  (Q711T9), 
SODC_PONPY  (Q8HXQ4), SODC_PRIGL  (P11418), SODC_RAT(P07632), 
SODC_SAPAP  (Q8HXP9), SODC_SCHMA  (Q01137), SODC_SCHPO  (P28758), 
SODC_SHEEP  (P09670), SODC_SOLCS  (O04996), SODC_SOYBN  (Q7M1R5), 
SODC_SPIOL  (P22233), SODC_XENTR  (Q0IIW3), SODC_XIPGL  (P03946), 
SODC_YARLI  (Q6C662), SODC_YEAST  (P00445), SODC_ZANAE  (O65174), 
SODC_ZINOF  (C0HK70), SODE_BRUPA  (P41963), SODE_CAEEL  (P34461), 
SODE_DROME  (Q7JR71), SODE_HAECO  (P51547), SODE_HUMAN  (P08294), 
SODE_MOUSE  (O09164), SODE_ONCVO  (Q07449), SODE_RABIT  (P41975), 
SODE_RAT(Q08420), SODE_SCHMA  (P16026)
» more

UniProtKB/Swiss-Prot
False negative sequences		 27 sequences 

CCS1_DEBHA  (Q6BK66), CCS_DICDI   (Q54F73), CCS_HUMAN   (O14618), 

CCS_MOUSE   (Q9WU84), CCS_PIG (Q6PWT7), CCS_RAT (Q9JK72), 
SODC1_AQUAE (O67149), SODC1_SALT4 (E8XDJ8), SODC1_SALTY (P0CW86), 
SODC2_AQUAE (O66602), SODCP_POPTM (P36214), SODC_DEIRA  (Q9RU48), 
SODC_DROTO  (Q95095), SODC_ECO57  (P0AGD2), SODC_ECOLI  (P0AGD1), 
SODC_HAEIF  (P25841), SODC_LEGPH  (Q5ZT17), SODC_LEGPN  (P69049), 
SODC_MYCBO  (P0A609), SODC_MYCLE  (Q9CBI6), SODC_MYCPA  (Q9AGW2), 
SODC_MYCTO  (P9WGE8), SODC_MYCTU  (P9WGE9), SODC_RABIT  (P09212), 
SODC_SALTY  (O68901), SODE_DIRIM  (P41974), YOJM_BACSU  (O31851)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 11 sequences 

SODC1_OLEEU (P80740), SODC2_DEBHN (P82902), SODC2_PICAB (P29428), 

SODCP_PICAB (P29427), SODCP_PINPS (P81082), SODC_AGGAC  (Q59081), 
SODC_HORVU  (P34936), SODC_LITCT  (P23417), SODC_MANHA  (Q51853), 
SODC_PAROL  (P83129), SODC_STRHE  (P81163)
» more

UniProtKB/Swiss-Prot
False positive sequences		 28 sequences 

BURS_PERAM  (P84118), CYSA_STRCO  (Q59829), FABH_BORBR  (Q7WD20), 

FABH_BORPA  (Q7W5I4), FABH_BORPE  (Q7VW29), GYRB_PSEPU  (P13364), 
HUTI_DEIRA  (Q9RZ05), RPOC_CHLL2  (B3EER3), SYA_BURA4   (B1YNJ6), 
SYA_BURCH   (A0K6N4), SYA_BURCM   (Q0BG79), SYA_BURM7   (A3MJ36), 
SYA_BURM9   (A2S3D4), SYA_BURMA   (Q62KZ3), SYA_BURMS   (A1V3F2), 
SYA_BURO0   (B1K026), SYA_BURO1   (Q1BX19), SYA_BURP0   (A3NUB0), 
SYA_BURP1   (Q3JT87), SYA_BURP6   (A3N8K7), SYA_BURPS   (Q63TF9), 
SYA_BURTA   (Q2SV73), SYA_CUPNH   (Q0K823), SYA_CUPPJ   (Q474F4), 
SYA_GEOSL   (P61701), SYA_METTH   (O27718), SYA_PARPJ   (B2SZN0), 
SYA_PARXL   (Q13W97)
» more

PDB
[Detailed view]		 169 PDB

1AZV; 1B4L; 1BZO; 1CB4; 1CBJ; 1COB; 1E9O; 1E9P; 1E9Q; 1F18; 1F1G; 1FUN; 1HL4; 1HL5; 1IB5; 1IBB; 1IBD; 1IBF; 1IBH; 1JCV; 1L3N; 1N18; 1N19; 1OAJ; 1OAL; 1OZU; 1P1V; 1PTZ; 1PU0; 1Q0E; 1SDA; 1SDY; 1SOS; 1SPD; 1SRD; 1SXA; 1SXB; 1SXC; 1SXN; 1SXS; 1SXZ; 1TO4; 1TO5; 1UXL; 1UXM; 1XSO; 1YAI; 1YAZ; 1YSO; 1Z9N; 1Z9P; 2AEO; 2AF2; 2APS; 2AQN; 2AQP; 2AQQ; 2AQR; 2AQS; 2AQT; 2C9S; 2C9U; 2C9V; 2GBT; 2GBU; 2GBV; 2JCW; 2JLP; 2LU5; 2MP3; 2NAM; 2R27; 2SOD; 2V0A; 2VR6; 2VR7; 2VR8; 2WKO; 2WYT; 2WYZ; 2WZ0; 2WZ5; 2WZ6; 2Z7U; 2Z7W; 2Z7Y; 2Z7Z; 2ZKW; 2ZKX; 2ZKY; 2ZOW; 3CQP; 3CQQ; 3ECU; 3ECV; 3GTT; 3GTV; 3GZO; 3GZP; 3GZQ; 3H2P; 3H2Q; 3HOG; 3HW7; 3KBE; 3KBF; 3KH3; 3KH4; 3KM1; 3KM2; 3L9E; 3L9Y; 3LTV; 3MKG; 3PU7; 3QQD; 3RE0; 3S0P; 3SOD; 3T5W; 4A7G; 4A7Q; 4A7S; 4A7T; 4A7U; 4A7V; 4B3E; 4FF9; 4L05; 4MCM; 4MCN; 4OH2; 5IN2; 5K02; 5O3Y; 5O40; 5YTO; 5YTU; 5YUL; 6A9O; 6DTK; 6FFK; 6FOI; 6FOL; 6FON; 6FP6; 6SPA; 6SPH; 6SPI; 6SPJ; 6SPK; 6Z3V; 6Z4G; 6Z4H; 6Z4I; 6Z4J; 6Z4K; 6Z4L; 6Z4M; 6Z4O; 7FB6; 7FB9; 7NXX; 7T8E; 7T8F; 7T8G; 7T8H; 7VZF; 8GSQ
» more