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Entry: PS00087

General information about the entry

Entry name [info] SOD_CU_ZN_1
Accession [info] PS00087
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE;
13-FEB-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00082

Name and characterization of the entry

Description [info] Copper/Zinc superoxide dismutase signature 1.
Pattern [info] 
[GA]-[IMFAT]-H-[LIVF]-H-{S}-x-[GP]-[SDG]-x-[STAGDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_02 which contains 559'228 sequence entries.


Total number of hits 179 in 179 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 28 in 28 different sequences
Number of false negative sequences 27
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 84.36 %
Recall (true positives / (true positives + false negatives)) 84.83 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] copper at position 3
Site [info] copper at position 5
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 151 sequences 

SOD1A_XENLA (P13926    ), SOD1B_XENLA (P15107    ), SODC1_ARATH (P24704    ), 

SODC1_BRAJU (Q42611    ), SODC1_DEBHA (O42724    ), SODC1_DICDI (Q55GQ5    ), 
SODC1_MESCR (P93258    ), SODC1_ORYSI (A2XGP6    ), SODC1_ORYSJ (Q0DRV6    ), 
SODC1_SOLLC (P14830    ), SODC2_ARATH (O78310    ), SODC2_BRAJU (Q42612    ), 
SODC2_DICDI (Q54RN1    ), SODC2_MAIZE (P11428    ), SODC2_MESCR (O49044    ), 
SODC2_OLEEU (Q8L5E0    ), SODC2_ORYSJ (P28757    ), SODC2_SOLLC (Q43779    ), 
SODC3_DICDI (Q54RQ1    ), SODC4_DICDI (Q54TU5    ), SODC4_MAIZE (P23345    ), 
SODC5_DICDI (Q54G70    ), SODC5_MAIZE (P23346    ), SODC6_DICDI (Q54TW8    ), 
SODCP_MEDSA (O65198    ), SODCP_ORYSJ (P93407    ), SODCP_PEA   (P11964    ), 
SODCP_PETHY (P10792    ), SODCP_PINSY (P24707    ), SODCP_SOLCS (O04997    ), 
SODCP_SOLLC (P14831    ), SODCP_SPIOL (P07505    ), SODCP_VITVI (O65199    ), 
SODCP_ZANAE (O65175    ), SODC_ACTPL  (P24702    ), SODC_ANACO  (Q9SQL5    ), 
SODC_ASHGO  (Q751L8    ), SODC_ASPFL  (Q8X1S6    ), SODC_ASPFU  (Q9Y8D9    ), 
SODC_ASPJA  (Q12548    ), SODC_ASPNC  (A2QMY6    ), SODC_ASPNG  (P85978    ), 
SODC_ASPOR  (Q877B5    ), SODC_BOMMO  (P82205    ), SODC_BOSMU  (Q52RN5    ), 
SODC_BOTFU  (Q70Q35    ), SODC_BOVIN  (P00442    ), SODC_BRAOC  (P09678    ), 
SODC_BRUAB  (P15453    ), SODC_BRUME  (P66826    ), SODC_BRUPA  (P41962    ), 
SODC_BRUSU  (P66827    ), SODC_CAEBR  (A8XCP3    ), SODC_CAEEL  (P34697    ), 
SODC_CALJA  (Q8HXP8    ), SODC_CAMDR  (H6BDU4    ), SODC_CANAX  (O59924    ), 
SODC_CANGA  (Q6FWL5    ), SODC_CAPAN  (O22373    ), SODC_CAPHI  (Q5FB29    ), 
SODC_CARCR  (P80174    ), SODC_CARPA  (O65768    ), SODC_CAUVC  (P20379    ), 
SODC_CAVPO  (P33431    ), SODC_CERCA  (P28755    ), SODC_CEREL  (O46412    ), 
SODC_CHICK  (P80566    ), SODC_CHYAM  (Q07182    ), SODC_CLAP2  (Q96VL0    ), 
SODC_COLGL  (O94178    ), SODC_CORMI  (Q8J0N2    ), SODC_CRYGA  (Q9C0N4    ), 
SODC_DANRE  (O73872    ), SODC_DROBS  (P54407    ), SODC_DROER  (Q9U4X4    ), 
SODC_DROMA  (P61853    ), SODC_DROMD  (Q95081    ), SODC_DROME  (P61851    ), 
SODC_DROMI  (Q95079    ), SODC_DROOB  (Q95085    ), SODC_DROOR  (Q9U4X5    ), 
SODC_DROPB  (Q95087    ), SODC_DROPE  (Q95088    ), SODC_DROPS  (Q95086    ), 
SODC_DROSE  (P61854    ), SODC_DROSI  (P61852    ), SODC_DROTE  (Q9U4X2    ), 
SODC_DROVI  (P10791    ), SODC_DROWI  (P41973    ), SODC_DROYA  (Q9U4X3    ), 
SODC_EMENI  (Q9HEY7    ), SODC_FRATH  (Q59448    ), SODC_HAECO  (Q27666    ), 
SODC_HAEDU  (Q59452    ), SODC_HAEPA  (P25842    ), SODC_HALRO  (P81926    ), 
SODC_HORSE  (P00443    ), SODC_HUMAN  (P00441    ), SODC_HUMLT  (P83684    ), 
SODC_HYLLA  (Q8HXQ3    ), SODC_IPOBA  (Q07796    ), SODC_ISATE  (Q8J0N3    ), 
SODC_KLULA  (Q6CPE2    ), SODC_LAMCR  (P81036    ), SODC_MACFA  (Q8HXQ1    ), 
SODC_MACFU  (Q8HXQ2    ), SODC_MACMU  (Q8HXQ0    ), SODC_MOUSE  (P08228    ), 
SODC_NEIMA  (P57005    ), SODC_NEIMB  (Q59623    ), SODC_NEUCR  (P07509    ), 
SODC_NICPL  (P27082    ), SODC_NPVAC  (P24705    ), SODC_NPVOP  (O12933    ), 
SODC_ONCVO  (P24706    ), SODC_PANGI  (O22668    ), SODC_PANTR  (P60052    ), 
SODC_PASMU  (Q59689    ), SODC_PAUKA  (O49073    ), SODC_PBCV1  (Q90023    ), 
SODC_PEA    (Q02610    ), SODC_PHOLE  (P00446    ), SODC_PIG    (P04178    ), 
SODC_PINSY  (P24669    ), SODC_PODAS  (Q711T9    ), SODC_PONPY  (Q8HXQ4    ), 
SODC_PRIGL  (P11418    ), SODC_RAT    (P07632    ), SODC_SAPAP  (Q8HXP9    ), 
SODC_SCHMA  (Q01137    ), SODC_SCHPO  (P28758    ), SODC_SHEEP  (P09670    ), 
SODC_SOLCS  (O04996    ), SODC_SOYBN  (Q7M1R5    ), SODC_SPIOL  (P22233    ), 
SODC_XENTR  (Q0IIW3    ), SODC_XIPGL  (P03946    ), SODC_YARLI  (Q6C662    ), 
SODC_YEAST  (P00445    ), SODC_ZANAE  (O65174    ), SODC_ZINOF  (C0HK70    ), 
SODE_BRUPA  (P41963    ), SODE_CAEEL  (P34461    ), SODE_DROME  (Q7JR71    ), 
SODE_HAECO  (P51547    ), SODE_HUMAN  (P08294    ), SODE_MOUSE  (O09164    ), 
SODE_ONCVO  (Q07449    ), SODE_RABIT  (P41975    ), SODE_RAT    (Q08420    ), 
SODE_SCHMA  (P16026    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 27 sequences 

CCS1_DEBHA  (Q6BK66    ), CCS_DICDI   (Q54F73    ), CCS_HUMAN   (O14618    ), 

CCS_MOUSE   (Q9WU84    ), CCS_PIG     (Q6PWT7    ), CCS_RAT     (Q9JK72    ), 
SODC1_AQUAE (O67149    ), SODC1_SALT4 (E8XDJ8    ), SODC1_SALTY (P0CW86    ), 
SODC2_AQUAE (O66602    ), SODCP_POPTM (P36214    ), SODC_DEIRA  (Q9RU48    ), 
SODC_DROTO  (Q95095    ), SODC_ECO57  (P0AGD2    ), SODC_ECOLI  (P0AGD1    ), 
SODC_HAEIF  (P25841    ), SODC_LEGPH  (Q5ZT17    ), SODC_LEGPN  (P69049    ), 
SODC_MYCBO  (P0A609    ), SODC_MYCLE  (Q9CBI6    ), SODC_MYCPA  (Q9AGW2    ), 
SODC_MYCTO  (P9WGE8    ), SODC_MYCTU  (P9WGE9    ), SODC_RABIT  (P09212    ), 
SODC_SALTY  (O68901    ), SODE_DIRIM  (P41974    ), YOJM_BACSU  (O31851    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 11 sequences 

SODC1_OLEEU (P80740    ), SODC2_DEBHN (P82902    ), SODC2_PICAB (P29428    ), 

SODCP_PICAB (P29427    ), SODCP_PINPS (P81082    ), SODC_AGGAC  (Q59081    ), 
SODC_HORVU  (P34936    ), SODC_LITCT  (P23417    ), SODC_MANHA  (Q51853    ), 
SODC_PAROL  (P83129    ), SODC_STRHE  (P81163    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 28 sequences 

BURS_PERAM  (P84118    ), CYSA_STRCO  (Q59829    ), FABH_BORBR  (Q7WD20    ), 

FABH_BORPA  (Q7W5I4    ), FABH_BORPE  (Q7VW29    ), GYRB_PSEPU  (P13364    ), 
HUTI_DEIRA  (Q9RZ05    ), RPOC_CHLL2  (B3EER3    ), SYA_BURA4   (B1YNJ6    ), 
SYA_BURCA   (Q1BX19    ), SYA_BURCC   (B1K026    ), SYA_BURCH   (A0K6N4    ), 
SYA_BURCM   (Q0BG79    ), SYA_BURM7   (A3MJ36    ), SYA_BURM9   (A2S3D4    ), 
SYA_BURMA   (Q62KZ3    ), SYA_BURMS   (A1V3F2    ), SYA_BURP0   (A3NUB0    ), 
SYA_BURP1   (Q3JT87    ), SYA_BURP6   (A3N8K7    ), SYA_BURPS   (Q63TF9    ), 
SYA_BURTA   (Q2SV73    ), SYA_CUPNH   (Q0K823    ), SYA_CUPNJ   (Q474F4    ), 
SYA_GEOSL   (P61701    ), SYA_METTH   (O27718    ), SYA_PARPJ   (B2SZN0    ), 
SYA_PARXL   (Q13W97    )
» more

PDB
[Detailed view]		 140 PDB

1AZV; 1B4L; 1BZO; 1CB4; 1CBJ; 1COB; 1E9O; 1E9P; 1E9Q; 1F18; 1F1G; 1FUN; 1HL4; 1HL5; 1IB5; 1IBB; 1IBD; 1IBF; 1IBH; 1JCV; 1L3N; 1N18; 1N19; 1OAJ; 1OAL; 1OZU; 1P1V; 1PTZ; 1PU0; 1Q0E; 1SDA; 1SDY; 1SOS; 1SPD; 1SRD; 1SXA; 1SXB; 1SXC; 1SXN; 1SXS; 1SXZ; 1TO4; 1TO5; 1UXL; 1UXM; 1XSO; 1YAI; 1YAZ; 1YSO; 1Z9N; 1Z9P; 2AEO; 2AF2; 2APS; 2AQN; 2AQP; 2AQQ; 2AQR; 2AQS; 2AQT; 2C9S; 2C9U; 2C9V; 2GBT; 2GBU; 2GBV; 2JCW; 2JLP; 2LU5; 2MP3; 2NAM; 2R27; 2SOD; 2V0A; 2VR6; 2VR7; 2VR8; 2WKO; 2WYT; 2WYZ; 2WZ0; 2WZ5; 2WZ6; 2Z7U; 2Z7W; 2Z7Y; 2Z7Z; 2ZKW; 2ZKX; 2ZKY; 2ZOW; 3CQP; 3CQQ; 3ECU; 3ECV; 3GTT; 3GTV; 3GZO; 3GZP; 3GZQ; 3H2P; 3H2Q; 3HOG; 3HW7; 3KBE; 3KBF; 3KH3; 3KH4; 3KM1; 3KM2; 3L9E; 3L9Y; 3LTV; 3MKG; 3PU7; 3QQD; 3RE0; 3S0P; 3SOD; 3T5W; 4A7G; 4A7Q; 4A7S; 4A7T; 4A7U; 4A7V; 4B3E; 4FF9; 4L05; 4MCM; 4MCN; 4OH2; 5IN2; 5K02; 5O3Y; 5O40; 5YTO; 5YTU; 5YUL; 6FFK
» more

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