PROSITE entry PS00087
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General information about the entry
| Entry name [info] | SOD_CU_ZN_1 |
| Accession [info] | PS00087 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00082 |
Name and characterization of the entry
| Description [info] | Copper/Zinc superoxide dismutase signature 1. |
| Pattern [info] |
[GA]-[IMFAT]-H-[LIVF]-H-{S}-x-[GP]-[SDG]-x-[STAGDE].
|
Numerical results [info]
| Total number of hits | 180 in 180 different sequences |
| Number of true positive hits | 152 in 152 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 28 in 28 different sequences |
| Number of false negative sequences | 27 |
| Number of 'partial' sequences | 11 |
| Precision (true positives / (true positives + false positives)) | 84.44 % |
| Recall (true positives / (true positives + false negatives)) | 84.92 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | copper at position 3 |
| Site [info] | copper at position 5 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
152 sequences
SOD1A_XENLA (P13926 ), SOD1B_XENLA (P15107 ), SODC1_ARATH (P24704 ), SODC1_BRAJU (Q42611 ), SODC1_DEBHA (O42724 ), SODC1_DICDI (Q55GQ5 ), SODC1_MESCR (P93258 ), SODC1_ORYSI (A2XGP6 ), SODC1_ORYSJ (Q0DRV6 ), SODC1_SOLLC (P14830 ), SODC2_ARATH (O78310 ), SODC2_BRAJU (Q42612 ), SODC2_DICDI (Q54RN1 ), SODC2_MAIZE (P11428 ), SODC2_MESCR (O49044 ), SODC2_OLEEU (Q8L5E0 ), SODC2_ORYSJ (P28757 ), SODC2_SOLLC (Q43779 ), SODC3_DICDI (Q54RQ1 ), SODC4_DICDI (Q54TU5 ), SODC4_MAIZE (P23345 ), SODC5_DICDI (Q54G70 ), SODC5_MAIZE (P23346 ), SODC6_DICDI (Q54TW8 ), SODCP_MEDSA (O65198 ), SODCP_ORYSJ (P93407 ), SODCP_PEA (P11964 ), SODCP_PETHY (P10792 ), SODCP_PINSY (P24707 ), SODCP_SOLCS (O04997 ), SODCP_SOLLC (P14831 ), SODCP_SPIOL (P07505 ), SODCP_VITVI (O65199 ), SODCP_ZANAE (O65175 ), SODC_ACTPL (P24702 ), SODC_ANACO (Q9SQL5 ), SODC_ASHGO (Q751L8 ), SODC_ASPFL (Q8X1S6 ), SODC_ASPFU (Q9Y8D9 ), SODC_ASPJA (Q12548 ), SODC_ASPNC (A2QMY6 ), SODC_ASPNG (P85978 ), SODC_ASPOR (Q877B5 ), SODC_BOMMO (P82205 ), SODC_BOSMU (Q52RN5 ), SODC_BOTFU (Q70Q35 ), SODC_BOVIN (P00442 ), SODC_BRAOC (P09678 ), SODC_BRUAB (P15453 ), SODC_BRUME (P66826 ), SODC_BRUPA (P41962 ), SODC_BRUSU (P66827 ), SODC_CAEBR (A8XCP3 ), SODC_CAEEL (P34697 ), SODC_CALJA (Q8HXP8 ), SODC_CAMDR (H6BDU4 ), SODC_CANAX (O59924 ), SODC_CANGA (Q6FWL5 ), SODC_CAPAN (O22373 ), SODC_CAPHI (Q5FB29 ), SODC_CARCR (P80174 ), SODC_CARPA (O65768 ), SODC_CAUVC (P20379 ), SODC_CAVPO (P33431 ), SODC_CERCA (P28755 ), SODC_CEREL (O46412 ), SODC_CHICK (P80566 ), SODC_CHYAM (Q07182 ), SODC_CLAP2 (Q96VL0 ), SODC_COLGL (O94178 ), SODC_CORMI (Q8J0N2 ), SODC_CORTN (Q8J0N3 ), SODC_CRYGA (Q9C0N4 ), SODC_CRYNH (J9VLJ9 ), SODC_DANRE (O73872 ), SODC_DROBS (P54407 ), SODC_DROER (Q9U4X4 ), SODC_DROMA (P61853 ), SODC_DROMD (Q95081 ), SODC_DROME (P61851 ), SODC_DROMI (Q95079 ), SODC_DROOB (Q95085 ), SODC_DROOR (Q9U4X5 ), SODC_DROPB (Q95087 ), SODC_DROPE (Q95088 ), SODC_DROPS (Q95086 ), SODC_DROSE (P61854 ), SODC_DROSI (P61852 ), SODC_DROTE (Q9U4X2 ), SODC_DROVI (P10791 ), SODC_DROWI (P41973 ), SODC_DROYA (Q9U4X3 ), SODC_EMENI (Q9HEY7 ), SODC_FRATH (Q59448 ), SODC_HAECO (Q27666 ), SODC_HAEDU (Q59452 ), SODC_HAEPA (P25842 ), SODC_HALRO (P81926 ), SODC_HORSE (P00443 ), SODC_HUMAN (P00441 ), SODC_HUMLT (P83684 ), SODC_HYLLA (Q8HXQ3 ), SODC_IPOBA (Q07796 ), SODC_KLULA (Q6CPE2 ), SODC_LAMCR (P81036 ), SODC_MACFA (Q8HXQ1 ), SODC_MACFU (Q8HXQ2 ), SODC_MACMU (Q8HXQ0 ), SODC_MOUSE (P08228 ), SODC_NEIMA (P57005 ), SODC_NEIMB (Q59623 ), SODC_NEUCR (P07509 ), SODC_NICPL (P27082 ), SODC_NPVAC (P24705 ), SODC_NPVOP (O12933 ), SODC_ONCVO (P24706 ), SODC_PANGI (O22668 ), SODC_PANTR (P60052 ), SODC_PASMU (Q59689 ), SODC_PAUKA (O49073 ), SODC_PBCV1 (Q90023 ), SODC_PEA (Q02610 ), SODC_PHOLE (P00446 ), SODC_PIG (P04178 ), SODC_PINSY (P24669 ), SODC_PODAS (Q711T9 ), SODC_PONPY (Q8HXQ4 ), SODC_PRIGL (P11418 ), SODC_RAT (P07632 ), SODC_SAPAP (Q8HXP9 ), SODC_SCHMA (Q01137 ), SODC_SCHPO (P28758 ), SODC_SHEEP (P09670 ), SODC_SOLCS (O04996 ), SODC_SOYBN (Q7M1R5 ), SODC_SPIOL (P22233 ), SODC_XENTR (Q0IIW3 ), SODC_XIPGL (P03946 ), SODC_YARLI (Q6C662 ), SODC_YEAST (P00445 ), SODC_ZANAE (O65174 ), SODC_ZINOF (C0HK70 ), SODE_BRUPA (P41963 ), SODE_CAEEL (P34461 ), SODE_DROME (Q7JR71 ), SODE_HAECO (P51547 ), SODE_HUMAN (P08294 ), SODE_MOUSE (O09164 ), SODE_ONCVO (Q07449 ), SODE_RABIT (P41975 ), SODE_RAT (Q08420 ), SODE_SCHMA (P16026 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
27 sequences
CCS1_DEBHA (Q6BK66 ), CCS_DICDI (Q54F73 ), CCS_HUMAN (O14618 ), CCS_MOUSE (Q9WU84 ), CCS_PIG (Q6PWT7 ), CCS_RAT (Q9JK72 ), SODC1_AQUAE (O67149 ), SODC1_SALT4 (E8XDJ8 ), SODC1_SALTY (P0CW86 ), SODC2_AQUAE (O66602 ), SODCP_POPTM (P36214 ), SODC_DEIRA (Q9RU48 ), SODC_DROTO (Q95095 ), SODC_ECO57 (P0AGD2 ), SODC_ECOLI (P0AGD1 ), SODC_HAEIF (P25841 ), SODC_LEGPH (Q5ZT17 ), SODC_LEGPN (P69049 ), SODC_MYCBO (P0A609 ), SODC_MYCLE (Q9CBI6 ), SODC_MYCPA (Q9AGW2 ), SODC_MYCTO (P9WGE8 ), SODC_MYCTU (P9WGE9 ), SODC_RABIT (P09212 ), SODC_SALTY (O68901 ), SODE_DIRIM (P41974 ), YOJM_BACSU (O31851 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
11 sequences
SODC1_OLEEU (P80740 ), SODC2_DEBHN (P82902 ), SODC2_PICAB (P29428 ), SODCP_PICAB (P29427 ), SODCP_PINPS (P81082 ), SODC_AGGAC (Q59081 ), SODC_HORVU (P34936 ), SODC_LITCT (P23417 ), SODC_MANHA (Q51853 ), SODC_PAROL (P83129 ), SODC_STRHE (P81163 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
28 sequences
BURS_PERAM (P84118 ), CYSA_STRCO (Q59829 ), FABH_BORBR (Q7WD20 ), FABH_BORPA (Q7W5I4 ), FABH_BORPE (Q7VW29 ), GYRB_PSEPU (P13364 ), HUTI_DEIRA (Q9RZ05 ), RPOC_CHLL2 (B3EER3 ), SYA_BURA4 (B1YNJ6 ), SYA_BURCH (A0K6N4 ), SYA_BURCM (Q0BG79 ), SYA_BURM7 (A3MJ36 ), SYA_BURM9 (A2S3D4 ), SYA_BURMA (Q62KZ3 ), SYA_BURMS (A1V3F2 ), SYA_BURO0 (B1K026 ), SYA_BURO1 (Q1BX19 ), SYA_BURP0 (A3NUB0 ), SYA_BURP1 (Q3JT87 ), SYA_BURP6 (A3N8K7 ), SYA_BURPS (Q63TF9 ), SYA_BURTA (Q2SV73 ), SYA_CUPNH (Q0K823 ), SYA_CUPPJ (Q474F4 ), SYA_GEOSL (P61701 ), SYA_METTH (O27718 ), SYA_PARPJ (B2SZN0 ), SYA_PARXL (Q13W97 )» more |
| PDB [Detailed view] |
164 PDB
1AZV; 1B4L; 1BZO; 1CB4; 1CBJ; 1COB; 1E9O; 1E9P; 1E9Q; 1F18; 1F1G; 1FUN; 1HL4; 1HL5; 1IB5; 1IBB; 1IBD; 1IBF; 1IBH; 1JCV; 1L3N; 1N18; 1N19; 1OAJ; 1OAL; 1OZU; 1P1V; 1PTZ; 1PU0; 1Q0E; 1SDA; 1SDY; 1SOS; 1SPD; 1SRD; 1SXA; 1SXB; 1SXC; 1SXN; 1SXS; 1SXZ; 1TO4; 1TO5; 1UXL; 1UXM; 1XSO; 1YAI; 1YAZ; 1YSO; 1Z9N; 1Z9P; 2AEO; 2AF2; 2APS; 2AQN; 2AQP; 2AQQ; 2AQR; 2AQS; 2AQT; 2C9S; 2C9U; 2C9V; 2GBT; 2GBU; 2GBV; 2JCW; 2JLP; 2LU5; 2MP3; 2NAM; 2R27; 2SOD; 2V0A; 2VR6; 2VR7; 2VR8; 2WKO; 2WYT; 2WYZ; 2WZ0; 2WZ5; 2WZ6; 2Z7U; 2Z7W; 2Z7Y; 2Z7Z; 2ZKW; 2ZKX; 2ZKY; 2ZOW; 3CQP; 3CQQ; 3ECU; 3ECV; 3GTT; 3GTV; 3GZO; 3GZP; 3GZQ; 3H2P; 3H2Q; 3HOG; 3HW7; 3KBE; 3KBF; 3KH3; 3KH4; 3KM1; 3KM2; 3L9E; 3L9Y; 3LTV; 3MKG; 3PU7; 3QQD; 3RE0; 3S0P; 3SOD; 3T5W; 4A7G; 4A7Q; 4A7S; 4A7T; 4A7U; 4A7V; 4B3E; 4FF9; 4L05; 4MCM; 4MCN; 4OH2; 5IN2; 5K02; 5O3Y; 5O40; 5YTO; 5YTU; 5YUL; 6A9O; 6DTK; 6FFK; 6FOI; 6FOL; 6FON; 6FP6; 6SPA; 6SPH; 6SPI; 6SPJ; 6SPK; 6Z3V; 6Z4G; 6Z4H; 6Z4I; 6Z4J; 6Z4K; 6Z4L; 6Z4M; 6Z4O; 7FB6; 7FB9; 7NXX; 7VZF » more |