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| Entry: PS00090 |
General information about the entry
| Entry name [info] | NITROGENASE_1_2 |
| Accession [info] | PS00090 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-1992 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00085 |
Name and characterization of the entry
| Description [info] | Nitrogenases component 1 alpha and beta subunits signature 2. |
| Pattern [info] |
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST]. |
Numerical results [info]
| Total number of hits | 75 in 75 different sequences |
| Number of true positive hits | 70 in 70 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 4 |
| Precision (true positives / (true positives + false positives)) | 93.33 % |
| Recall (true positives / (true positives + false negatives)) | 84.34 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron_sulfur(?) at position 3 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
70 sequences
ANFD_AZOVI (P16266 ), ANFD_HELGE (O68955 ), ANFD_RHOCA (Q07933 ), ANFK_AZOVI (P16267 ), ANFK_RHOCA (Q07935 ), ANFK_RUMHU (Q46084 ), NIFD_ACIFI (P06662 ), NIFD_ALCFA (Q44045 ), NIFD_AZOBR (P25313 ), NIFD_AZOVI (P07328 ), NIFD_BRADU (P06121 ), NIFD_BRASP (P06120 ), NIFD_CLOPA (P00467 ), NIFD_CROS5 (O07642 ), NIFD_FRAAL (Q02452 ), NIFD_HERSE (P77874 ), NIFD_KLEPN (P00466 ), NIFD_LEPBY (Q00239 ), NIFD_METBA (P55170 ), NIFD_METMI (P0CW50 ), NIFD_METMP (P0CW51 ), NIFD_METTH (O27605 ), NIFD_METTL (P20620 ), NIFD_METTM (Q50788 ), NIFD_NOSCO (P52337 ), NIFD_NOSS1 (P00464 ), NIFD_RHICP (P06769 ), NIFD_RHOCA (P08717 ), NIFD_RIPO1 (Q55029 ), NIFD_SINFN (P19066 ), NIFE_AZOVI (P08293 ), NIFE_BRADU (P26506 ), NIFE_CLOPA (P10996 ), NIFE_KLEPN (P08737 ), NIFE_METBA (P51755 ), NIFE_METMI (P0CW54 ), NIFE_METMP (P0CW55 ), NIFE_METTH (O27607 ), NIFE_METTM (P95297 ), NIFE_NOSS1 (Q44144 ), NIFE_RHILO (Q98AP4 ), NIFE_RHIME (Q92ZL2 ), NIFE_RHOCA (P19055 ), NIFE_RIPO1 (O07355 ), NIFE_SINFN (P55673 ), NIFK_ACIFI (P15052 ), NIFK_AZOBR (P25314 ), NIFK_AZOVI (P07329 ), NIFK_BRADU (P20621 ), NIFK_BRASP (P06122 ), NIFK_CLOPA (P11347 ), NIFK_CROS5 (O07643 ), NIFK_HERSE (P77875 ), NIFK_KLEPN (P09772 ), NIFK_METMI (P0CW52 ), NIFK_METMP (P0CW53 ), NIFK_METTH (O27606 ), NIFK_METTM (P95296 ), NIFK_NOSS1 (P00468 ), NIFK_RIPO1 (Q55030 ), NIFK_SINFN (P19067 ), VNFD_AZOCH (P15332 ), VNFD_AZOPA (O68953 ), VNFD_AZOSA (O68954 ), VNFD_AZOVI (P16855 ), VNFK_AZOCH (P15334 ), VNFK_AZOPA (O68949 ), VNFK_AZOSA (O68952 ), VNFK_AZOVI (P16856 ), VNFK_TRIV2 (Q57302 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
ANFD_RUMHU (Q46082 ), NIFK_FRAAL (Q57118 ), NIFK_METBA (P51754 ), NIFN_AZOVI (P10336 ), NIFN_BRADU (P26507 ), NIFN_HERSE (O87627 ), NIFN_KLEPN (P08738 ), NIFN_NOSS1 (Q44145 ), NIFN_RHILO (Q98AP3 ), NIFN_RHIME (P12781 ), NIFN_RHOCA (P19077 ), NIFN_RIPO1 (O07356 ), NIFN_SINFN (P55674 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
NIFD_ANASL (P33177 ), NIFD_METIV (P51605 ), NIFD_RHILT (P00465 ), NIFK_METTL (P20622 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
E4PD_YERE8 (A1JPR1 ), E4PD_YERPA (Q1CB62 ), E4PD_YERPE (Q7CGS4 ), E4PD_YERPN (Q1CEY2 ), E4PD_YERPS (Q666Q0 )» more |
| PDB [Detailed view] |
62 PDB
1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 4WNA; 4WZA; 4WZB; 4XPI; 5BVG; 5BVH; 5CX1; 5N6Y; 5VPW; 5VQ3; 5VQ4; 6BBL; 6CDK; 6O7L; 6O7M; 6O7N; 6O7O; 6O7P; 6O7Q; 6O7R; 6O7S; 6OP1; 6OP2; 6OP3; 6OP4; 6UG0; 6VXT; 7ADR; 7ADY; 7AIZ; 7JRF; 7MCI; 7UT6; 7UT7; 7UT8; 7UT9; 7UTA; 8DPN » more |
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