PROSITE entry PS00090
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General information about the entry
| Entry name [info] | NITROGENASE_1_2 |
| Accession [info] | PS00090 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-1992 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00085 |
Name and characterization of the entry
| Description [info] | Nitrogenases component 1 alpha and beta subunits signature 2. |
| Pattern [info] |
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST]. |
Numerical results [info]
| Total number of hits | 75 in 75 different sequences |
| Number of true positive hits | 70 in 70 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 4 |
| Precision (true positives / (true positives + false positives)) | 93.33 % |
| Recall (true positives / (true positives + false negatives)) | 84.34 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron_sulfur(?) at position 3 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
70 sequences
ANFD_AZOVI (P16266), ANFD_HELGE (O68955), ANFD_RHOCA (Q07933), ANFK_AZOVI (P16267), ANFK_RHOCA (Q07935), ANFK_RUMHU (Q46084), NIFD_ACIFI (P06662), NIFD_ALCFA (Q44045), NIFD_AZOBR (P25313), NIFD_AZOVI (P07328), NIFD_BRADU (P06121), NIFD_BRASP (P06120), NIFD_CLOPA (P00467), NIFD_CROS5 (O07642), NIFD_FRAAL (Q02452), NIFD_HERSE (P77874), NIFD_KLEPN (P00466), NIFD_LEPBY (Q00239), NIFD_METBA (P55170), NIFD_METMI (P0CW50), NIFD_METMP (P0CW51), NIFD_METTH (O27605), NIFD_METTL (P20620), NIFD_METTM (Q50788), NIFD_NOSCO (P52337), NIFD_NOSS1 (P00464), NIFD_RHICP (P06769), NIFD_RHOCA (P08717), NIFD_RIPO1 (Q55029), NIFD_SINFN (P19066), NIFE_AZOVI (P08293), NIFE_BRADU (P26506), NIFE_CLOPA (P10996), NIFE_KLEPN (P08737), NIFE_METBA (P51755), NIFE_METMI (P0CW54), NIFE_METMP (P0CW55), NIFE_METTH (O27607), NIFE_METTM (P95297), NIFE_NOSS1 (Q44144), NIFE_RHILO (Q98AP4), NIFE_RHIME (Q92ZL2), NIFE_RHOCA (P19055), NIFE_RIPO1 (O07355), NIFE_SINFN (P55673), NIFK_ACIFI (P15052), NIFK_AZOBR (P25314), NIFK_AZOVI (P07329), NIFK_BRADU (P20621), NIFK_BRASP (P06122), NIFK_CLOPA (P11347), NIFK_CROS5 (O07643), NIFK_HERSE (P77875), NIFK_KLEPN (P09772), NIFK_METMI (P0CW52), NIFK_METMP (P0CW53), NIFK_METTH (O27606), NIFK_METTM (P95296), NIFK_NOSS1 (P00468), NIFK_RIPO1 (Q55030), NIFK_SINFN (P19067), VNFD_AZOCH (P15332), VNFD_AZOPA (O68953), VNFD_AZOSA (O68954), VNFD_AZOVI (P16855), VNFK_AZOCH (P15334), VNFK_AZOPA (O68949), VNFK_AZOSA (O68952), VNFK_AZOVI (P16856), VNFK_TRIV2 (Q57302)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
ANFD_RUMHU (Q46082), NIFK_FRAAL (Q57118), NIFK_METBA (P51754), NIFN_AZOVI (P10336), NIFN_BRADU (P26507), NIFN_HERSE (O87627), NIFN_KLEPN (P08738), NIFN_NOSS1 (Q44145), NIFN_RHILO (Q98AP3), NIFN_RHIME (P12781), NIFN_RHOCA (P19077), NIFN_RIPO1 (O07356), NIFN_SINFN (P55674)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
NIFD_ANASL (P33177), NIFD_METIV (P51605), NIFD_RHILT (P00465), NIFK_METTL (P20622)» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
E4PD_YERE8 (A1JPR1), E4PD_YERPA (Q1CB62), E4PD_YERPE (Q7CGS4), E4PD_YERPN (Q1CEY2), E4PD_YERPS (Q666Q0)» more |
| PDB [Detailed view] |
76 PDB
1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 4WNA; 4WZA; 4WZB; 4XPI; 5BVG; 5BVH; 5CX1; 5N6Y; 5VPW; 5VQ3; 5VQ4; 6BBL; 6CDK; 6O7L; 6O7M; 6O7N; 6O7O; 6O7P; 6O7Q; 6O7R; 6O7S; 6OP1; 6OP2; 6OP3; 6OP4; 6UG0; 6VXT; 7ADR; 7ADY; 7AIZ; 7JRF; 7MCI; 7UT6; 7UT7; 7UT8; 7UT9; 7UTA; 8BOQ; 8BTS; 8CRS; 8DBX; 8DBY; 8DFC; 8DFD; 8DPN; 8E3T; 8E3U; 8E3V; 8ENL; 8ENM; 8ENN; 8ENO » more |