PROSITE entry PS00090
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | NITROGENASE_1_2 |
| Accession [info] | PS00090 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-1992 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00085 |
Name and characterization of the entry
| Description [info] | Nitrogenases component 1 alpha and beta subunits signature 2. |
| Pattern [info] |
[STANQ]-[ET]-C-x(5)-G-D-[DN]-[LIVMT]-x-[STAGR]-[LIVMFYST]. |
Numerical results [info]
| Total number of hits | 75 in 75 different sequences |
| Number of true positive hits | 70 in 70 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 4 |
| Precision (true positives / (true positives + false positives)) | 93.33 % |
| Recall (true positives / (true positives + false negatives)) | 84.34 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron_sulfur(?) at position 3 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
70 sequences
ANFD_AZOVI (P16266), ANFD_HELGE (O68955), ANFD_RHOCA (Q07933), ANFK_AZOVI (P16267), ANFK_RHOCA (Q07935), ANFK_RUMHU (Q46084), NIFD_ACIFI (P06662), NIFD_ALCFA (Q44045), NIFD_AZOBR (P25313), NIFD_AZOVI (P07328), NIFD_BRADU (P06121), NIFD_BRASP (P06120), NIFD_CLOPA (P00467), NIFD_CROS5 (O07642), NIFD_FRAAL (Q02452), NIFD_HERSE (P77874), NIFD_KLEPN (P00466), NIFD_LEPBY (Q00239), NIFD_METBA (P55170), NIFD_METMI (P0CW50), NIFD_METMP (P0CW51), NIFD_METTH (O27605), NIFD_METTL (P20620), NIFD_METTM (Q50788), NIFD_NOSCO (P52337), NIFD_NOSS1 (P00464), NIFD_RHICP (P06769), NIFD_RHOCA (P08717), NIFD_RIPO1 (Q55029), NIFD_SINFN (P19066), NIFE_AZOVI (P08293), NIFE_BRADU (P26506), NIFE_CLOPA (P10996), NIFE_KLEPN (P08737), NIFE_METBA (P51755), NIFE_METMI (P0CW54), NIFE_METMP (P0CW55), NIFE_METTH (O27607), NIFE_METTM (P95297), NIFE_NOSS1 (Q44144), NIFE_RHILO (Q98AP4), NIFE_RHIME (Q92ZL2), NIFE_RHOCA (P19055), NIFE_RIPO1 (O07355), NIFE_SINFN (P55673), NIFK_ACIFI (P15052), NIFK_AZOBR (P25314), NIFK_AZOVI (P07329), NIFK_BRADU (P20621), NIFK_BRASP (P06122), NIFK_CLOPA (P11347), NIFK_CROS5 (O07643), NIFK_HERSE (P77875), NIFK_KLEPN (P09772), NIFK_METMI (P0CW52), NIFK_METMP (P0CW53), NIFK_METTH (O27606), NIFK_METTM (P95296), NIFK_NOSS1 (P00468), NIFK_RIPO1 (Q55030), NIFK_SINFN (P19067), VNFD_AZOCH (P15332), VNFD_AZOPA (O68953), VNFD_AZOSA (O68954), VNFD_AZOVI (P16855), VNFK_AZOCH (P15334), VNFK_AZOPA (O68949), VNFK_AZOSA (O68952), VNFK_AZOVI (P16856), VNFK_TRIV2 (Q57302)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
ANFD_RUMHU (Q46082), NIFK_FRAAL (Q57118), NIFK_METBA (P51754), NIFN_AZOVI (P10336), NIFN_BRADU (P26507), NIFN_HERSE (O87627), NIFN_KLEPN (P08738), NIFN_NOSS1 (Q44145), NIFN_RHILO (Q98AP3), NIFN_RHIME (P12781), NIFN_RHOCA (P19077), NIFN_RIPO1 (O07356), NIFN_SINFN (P55674)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
NIFD_ANASL (P33177), NIFD_METIV (P51605), NIFD_RHILT (P00465), NIFK_METTL (P20622)» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
E4PD_YERE8 (A1JPR1), E4PD_YERPA (Q1CB62), E4PD_YERPE (Q7CGS4), E4PD_YERPN (Q1CEY2), E4PD_YERPS (Q666Q0)» more |
| PDB [Detailed view] |
77 PDB
1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 4WNA; 4WZA; 4WZB; 4XPI; 5BVG; 5BVH; 5CX1; 5N6Y; 5VPW; 5VQ3; 5VQ4; 6BBL; 6CDK; 6O7L; 6O7M; 6O7N; 6O7O; 6O7P; 6O7Q; 6O7R; 6O7S; 6OP1; 6OP2; 6OP3; 6OP4; 6UG0; 6VXT; 7ADR; 7ADY; 7AIZ; 7JRF; 7MCI; 7UT6; 7UT7; 7UT8; 7UT9; 7UTA; 8BOQ; 8BTS; 8CRS; 8DBX; 8DBY; 8DFC; 8DFD; 8DPN; 8E3T; 8E3U; 8E3V; 8ENL; 8ENM; 8ENN; 8ENO; 8P8G » more |