PROSITE entry PS00095
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General information about the entry
Entry name [info] | C5_MTASE_2 |
Accession [info] | PS00095 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-2003 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00089 |
Name and characterization of the entry
Description [info] | C-5 cytosine-specific DNA methylases C-terminal signature. |
Pattern [info] |
[RKQGTF]-x(2)-G-N-[SA]-[LIVF]-x-[VIP]-x-[LVMT]-x(3)-[LIVM]-x(3)-[LIVM]. |
Numerical results [info]
Total number of hits | 78 in 78 different sequences |
Number of true positive hits | 68 in 68 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 10 in 10 different sequences |
Number of false negative sequences | 25 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 87.18 % |
Recall (true positives / (true positives + false negatives)) | 73.12 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
68 sequences
CMT2_ORYSJ (Q5KQL9 ), DCM_ECO57 (P0AEE0 ), DCM_ECOLI (P0AED9 ), DNM1A_ORYSJ (Q7Y1I7 ), DNM1B_ORYSJ (B1Q3J6 ), DNMT1_ARATH (P34881 ), DNMT1_BOVIN (Q24K09 ), DNMT1_CHICK (Q92072 ), DNMT1_HUMAN (P26358 ), DNMT1_MOUSE (P13864 ), DNMT1_PARLI (Q27746 ), DNMT1_RAT (Q9Z330 ), DNMT2_ARATH (Q9M0S8 ), DNMT3_ARATH (Q9T0I1 ), DNMT4_ARATH (O23273 ), MT36_OCEIH (Q8EL95 ), MTA1_THAGE (P94147 ), MTAB_SYNP2 (P34883 ), MTB1_BACP9 (P0DW08 ), MTB1_BREEP (P10283 ), MTB1_HERAU (P25262 ), MTB1_LYSSH (P13906 ), MTB6_BACSF (P43420 ), MTBA_ANEAE (P19888 ), MTBB_BPSPB (P09389 ), MTBF_BACIU (P17044 ), MTBP_BACSU (P68585 ), MTBP_BPPHT (P68586 ), MTBR_BACIU (P06530 ), MTBR_BPRH1 (P09915 ), MTBS_BPSPR (P00476 ), MTC1_HERAU (P25263 ), MTC2_HERAU (P25264 ), MTD1_DESNO (P05302 ), MTD1_HERAU (P24600 ), MTD2_HERAU (P25265 ), MTD5_DACSA (P50185 ), MTE1_HERAU (P25266 ), MTE2_ECOLX (P05101 ), MTE8_ECOLX (P50196 ), MTF1_FUSNU (P34906 ), MTH1_HAEPH (P05102 ), MTH2_HAEAE (O30868 ), MTH3_HAEAE (P20589 ), MTH5_HAEIN (P45000 ), MTHA_HAEPH (P50192 ), MTHT_METTF (P29567 ), MTM1_MORSP (P11408 ), MTM4_NEIGO (P31033 ), MTN1_LENAE (P50188 ), MTNX_NEILA (P24581 ), MTP1_PSYTA (O33481 ), MTP2_NEIGO (P08455 ), MTS1_SALIN (P09795 ), MTS2_SHISO (P34879 ), MTS3_STAAU (P16668 ), MTS9_STAAU (P23737 ), MTSA_LACLC (P34877 ), MTSB_LACLC (P34878 ), MTSI_SPISQ (P15840 ), MTX2_XANOR (P52311 ), PMT1M_SCHPO (P40999 ), TRDMT_BOVIN (Q7YS61 ), TRDMT_HUMAN (O14717 ), TRDMT_MOUSE (O55055 ), TRDMT_RAT (Q4G073 ), TRDMT_SPOFR (A0A2H1VE33), YDIP_BACSU (O34680 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
25 sequences
CMT1_ORYSJ (A0A0P0VUY4), CMT3_ORYSJ (C0SQ89 ), DNM3A_CHICK (Q4W5Z4 ), DNM3A_HUMAN (Q9Y6K1 ), DNM3A_MOUSE (O88508 ), DNM3A_RAT (Q1LZ53 ), DNM3B_HUMAN (Q9UBC3 ), DNM3B_MOUSE (O88509 ), DRM1L_ARATH (Q9LXE5 ), DRM2_ARATH (Q9M548 ), MT51_METJA (Q57983 ), MTA1_CELCE (P31974 ), MTAP_ARTPN (D4ZX35 ), MTB1_BREBE (P34905 ), MTB1_NEIGO (Q59603 ), MTB5_NEIGO (Q59605 ), MTC1_PBCVI (P36216 ), MTD1_NEIMC (Q9RLM4 ), MTF7_NEIGO (Q59606 ), MTG1_AVIVO (P25282 ), MTG2_AVIVO (P25283 ), MTH2_HAEPA (P15446 ), MTM7_METJA (Q58600 ), MTN4_NEILA (P50182 ), YDIO_BACSU (O34939 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
MTG1_HERAU (P25267 ) |
UniProtKB/Swiss-Prot False positive sequences |
10 sequences
ATPB_MYCGI (A4T8K2 ), ATPB_MYCLE (P45823 ), CDAA_BACSU (Q45589 ), GCY8E_DROME (Q8INF0 ), OBG_BORAP (Q0SM73 ), OBG_BORBU (O51722 ), OBG_BORBZ (B7J0M7 ), OBG_BORGP (Q65ZZ3 ), WCAF_ECOLI (P0ACD2 ), WCAF_SHIFL (P0ACD3 )» more |
PDB [Detailed view] |
59 PDB
10MH; 1DCT; 1FJX; 1G55; 1HMY; 1M0E; 1MHT; 1SKM; 1SVU; 2C7O; 2C7P; 2C7Q; 2C7R; 2HMY; 2HR1; 2I9K; 2UYC; 2UYH; 2UZ4; 2Z6A; 2Z6Q; 2Z6U; 2ZCJ; 3AV4; 3AV5; 3AV6; 3EEO; 3MHT; 3PT6; 3PT9; 3PTA; 3SWR; 3UBT; 4DA4; 4H0N; 4MHT; 4WXX; 4YOC; 5CIY; 5GUT; 5GUV; 5LOD; 5MHT; 5WY1; 6FDF; 6MHT; 6W8V; 6W8W; 6X9I; 6X9J; 6X9K; 7MHT; 7SFC; 7SFD; 7SFE; 7SFF; 7SFG; 8MHT; 9MHT » more |