PROSITE entry PS00095
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General information about the entry
Entry name [info] | C5_MTASE_2 |
Accession [info] | PS00095 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-2003 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00089 |
Name and characterization of the entry
Description [info] | C-5 cytosine-specific DNA methylases C-terminal signature. |
Pattern [info] |
[RKQGTF]-x(2)-G-N-[SA]-[LIVF]-x-[VIP]-x-[LVMT]-x(3)-[LIVM]-x(3)-[LIVM]. |
Numerical results [info]
Total number of hits | 78 in 78 different sequences |
Number of true positive hits | 68 in 68 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 10 in 10 different sequences |
Number of false negative sequences | 25 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 87.18 % |
Recall (true positives / (true positives + false negatives)) | 73.12 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
68 sequences
CMT2_ORYSJ (Q5KQL9), DCM_ECO57 (P0AEE0), DCM_ECOLI (P0AED9), DNM1A_ORYSJ (Q7Y1I7), DNM1B_ORYSJ (B1Q3J6), DNMT1_ARATH (P34881), DNMT1_BOVIN (Q24K09), DNMT1_CHICK (Q92072), DNMT1_HUMAN (P26358), DNMT1_MOUSE (P13864), DNMT1_PARLI (Q27746), DNMT1_RAT (Q9Z330), DNMT2_ARATH (Q9M0S8), DNMT3_ARATH (Q9T0I1), DNMT4_ARATH (O23273), MT36_OCEIH (Q8EL95), MTA1_THAGE (P94147), MTAB_SYNP2 (P34883), MTB1_BACP9 (P0DW08), MTB1_BREEP (P10283), MTB1_HERAU (P25262), MTB1_LYSSH (P13906), MTB6_BACSF (P43420), MTBA_ANEAE (P19888), MTBB_BPSPB (P09389), MTBF_BACIU (P17044), MTBP_BACSU (P68585), MTBP_BPPHT (P68586), MTBR_BACIU (P06530), MTBR_BPRH1 (P09915), MTBS_BPSPR (P00476), MTC1_HERAU (P25263), MTC2_HERAU (P25264), MTD1_DESNO (P05302), MTD1_HERAU (P24600), MTD2_HERAU (P25265), MTD5_DACSA (P50185), MTE1_HERAU (P25266), MTE2_ECOLX (P05101), MTE8_ECOLX (P50196), MTF1_FUSNU (P34906), MTH1_HAEPH (P05102), MTH2_HAEAE (O30868), MTH3_HAEAE (P20589), MTH5_HAEIN (P45000), MTHA_HAEPH (P50192), MTHT_METTF (P29567), MTM1_MORSP (P11408), MTM4_NEIGO (P31033), MTN1_LENAE (P50188), MTNX_NEILA (P24581), MTP1_PSYTA (O33481), MTP2_NEIGO (P08455), MTS1_SALIN (P09795), MTS2_SHISO (P34879), MTS3_STAAU (P16668), MTS9_STAAU (P23737), MTSA_LACLC (P34877), MTSB_LACLC (P34878), MTSI_SPISQ (P15840), MTX2_XANOR (P52311), PMT1M_SCHPO (P40999), TRDMT_BOVIN (Q7YS61), TRDMT_HUMAN (O14717), TRDMT_MOUSE (O55055), TRDMT_RAT (Q4G073), TRDMT_SPOFR (A0A2H1VE33), YDIP_BACSU (O34680)» more
|
UniProtKB/Swiss-Prot False negative sequences |
25 sequences
CMT1_ORYSJ (A0A0P0VUY4), CMT3_ORYSJ (C0SQ89), DNM3A_CHICK (Q4W5Z4), DNM3A_HUMAN (Q9Y6K1), DNM3A_MOUSE (O88508), DNM3A_RAT (Q1LZ53), DNM3B_HUMAN (Q9UBC3), DNM3B_MOUSE (O88509), DRM1L_ARATH (Q9LXE5), DRM2_ARATH (Q9M548), MT51_METJA (Q57983), MTA1_CELCE (P31974), MTAP_ARTPN (D4ZX35), MTB1_BREBE (P34905), MTB1_NEIGO (Q59603), MTB5_NEIGO (Q59605), MTC1_PBCVI (P36216), MTD1_NEIMC (Q9RLM4), MTF7_NEIGO (Q59606), MTG1_AVIVO (P25282), MTG2_AVIVO (P25283), MTH2_HAEPA (P15446), MTM7_METJA (Q58600), MTN4_NEILA (P50182), YDIO_BACSU (O34939)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
MTG1_HERAU (P25267) |
UniProtKB/Swiss-Prot False positive sequences |
10 sequences
ATPB_MYCGI (A4T8K2), ATPB_MYCLE (P45823), CDAA_BACSU (Q45589), GCY8E_DROME (Q8INF0), OBG_BORAP (Q0SM73), OBG_BORBU (O51722), OBG_BORBZ (B7J0M7), OBG_BORGP (Q65ZZ3), WCAF_ECOLI (P0ACD2), WCAF_SHIFL (P0ACD3)» more |
PDB [Detailed view] |
61 PDB
10MH; 1DCT; 1FJX; 1G55; 1HMY; 1M0E; 1MHT; 1SKM; 1SVU; 2C7O; 2C7P; 2C7Q; 2C7R; 2HMY; 2HR1; 2I9K; 2UYC; 2UYH; 2UZ4; 2Z6A; 2Z6Q; 2Z6U; 2ZCJ; 3AV4; 3AV5; 3AV6; 3EEO; 3MHT; 3PT6; 3PT9; 3PTA; 3SWR; 3UBT; 4DA4; 4H0N; 4MHT; 4WXX; 4YOC; 5CIY; 5GUT; 5GUV; 5LOD; 5MHT; 5WY1; 6FDF; 6MHT; 6W8V; 6W8W; 6X9I; 6X9J; 6X9K; 7MHT; 7SFC; 7SFD; 7SFE; 7SFF; 7SFG; 7XI9; 7XIB; 8MHT; 9MHT » more |