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Entry: PS00115

General information about the entry

Entry name [info] RNA_POL_II_REPEAT
Accession [info] PS00115
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00106

Name and characterization of the entry

Description [info] Eukaryotic RNA polymerase II heptapeptide repeat.
Pattern [info]
Y-[ST]-P-[ST]-S-P-[STANK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 350 in 16 different sequences
Number of true positive hits 348 in 14 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.43 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 43
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
14 sequences

NRPB1_ARATH (P18616    ), RPB1_ASHGO  (Q75A34    ), RPB1_CAEBR  (P35074    ), 
RPB1_CAEEL  (P16356    ), RPB1_CRIGR  (P11414    ), RPB1_DICDI  (P35084    ), 
RPB1_DROME  (P04052    ), RPB1_ENCCU  (Q8SSC4    ), RPB1_HUMAN  (P24928    ), 
RPB1_MOUSE  (P08775    ), RPB1_PICGU  (A5DCV3    ), RPB1_PLAFD  (P14248    ), 
RPB1_SCHPO  (P36594    ), RPB1_YEAST  (P04050    )
» more

UniProtKB/Swiss-Prot
False positive sequences
2 sequences

DNLJ_THEAB  (B7IDX6    ), RFX3_XENTR  (Q0V9K5    )

		
PDB
[Detailed view]
150 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4GWQ; 4JXT; 4PZ6; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FMF; 5FYW; 5FZ5; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5M3H; 5M3J; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6DRD; 6F5P; 6GYK; 6GYL; 6GYM; 6I84; 6O6C; 6O9L
» more

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