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PROSITE entry PS00115


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General information about the entry

Entry name [info] RNA_POL_II_REPEAT
Accession [info] PS00115
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00106

Name and characterization of the entry

Description [info] Eukaryotic RNA polymerase II heptapeptide repeat.
Pattern [info] 
Y-[ST]-P-[ST]-S-P-[STANK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 372 in 18 different sequences
Number of true positive hits 369 in 15 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.19 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 43
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 15 sequences 

NRPB1_ARATH (P18616), RPB1_BOVIN  (G3MZY8), RPB1_CAEBR  (P35074), 

RPB1_CAEEL  (P16356), RPB1_CRIGR  (P11414), RPB1_DICDI  (P35084), 
RPB1_DROME  (P04052), RPB1_ENCCU  (Q8SSC4), RPB1_EREGS  (Q75A34), 
RPB1_HUMAN  (P24928), RPB1_MOUSE  (P08775), RPB1_PICGU  (A5DCV3), 
RPB1_PLAFD  (P14248), RPB1_SCHPO  (P36594), RPB1_YEAST  (P04050)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

CDS3_ARATH  (Q1PE48), DNLJ_THEAB  (B7IDX6), RFX3_XENTR  (Q0V9K5)


				
	

	

		PDB
[Detailed view]		
		
			254 PDB
			


			1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 
			
				1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 
				2E2I; 2E2J; 2GHQ; 2GHT; 2JA5; 2JA6; 2JA7; 2JA8; 2L0I; 2LO6; 2NVQ; 2NVT; 
				2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3D9K; 3D9L; 3D9M; 
				3D9N; 3D9O; 3D9P; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 
				3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3K1F; 3K7A; 
				3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 
				3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 
				4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4GWQ; 
				4JXT; 4PZ6; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 
				5C4J; 5C4X; 5FLM; 5FMF; 5FYW; 5FZ5; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 
				5IYA; 5IYB; 5IYC; 5IYD; 5LVF; 5M3H; 5M3J; 5M9D; 5OIK; 5OQJ; 5OQM; 5OT2; 
				5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 
				6DRD; 6F5P; 6GYK; 6GYL; 6GYM; 6I84; 6IC8; 6IC9; 6NPW; 6O6C; 6O9L; 6Q5Y; 
				6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XKB; 6XRE; 7B0Y; 7EGB; 7EGC; 
				7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 
				7NKY; 7O4I; 7O4J; 7O4K; 7O4L; 7O72; 7O73; 7O75; 7OKX; 7OKY; 7OO3; 7OOB; 
				7OOP; 7OPC; 7OPD; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIG; 
				7UIO; 7YCX; 7Z1K; 7Z42; 7ZS9; 7ZSA; 7ZSB; 8CEN; 8CEO; 8JCH; 8K5P; 8OEU; 
				8OEV; 8OEW; 8OF0; 8P4B; 8P4C; 8P4D; 8P4E; 8P4F; 8PNQ; 8R3K; 8R3L; 8R60; 
				8R65; 8TUG; 8TVP; 8TVQ; 8TVS; 8TVV; 8TVW; 8TVX; 8TVY; 8UKQ; 8UKR; 8UKS; 
				8UKT; 8UKU
			
			

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