PROSITE entry PS00116
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General information about the entry
Entry name [info] | DNA_POLYMERASE_B |
Accession [info] | PS00116 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00107 |
Name and characterization of the entry
Description [info] | DNA polymerase family B signature. |
Pattern [info] |
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC]. |
Numerical results [info]
Total number of hits | 165 in 165 different sequences |
Number of true positive hits | 148 in 148 different sequences |
Number of 'unknown' hits | 2 in 2 different sequences |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 26 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 90.80 % |
Recall (true positives / (true positives + false negatives)) | 85.06 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
148 sequences
DPO1_KLULA (P09804 ), DPO2_ECOLI (P21189 ), DPO2_KLULA (P05468 ), DPO5_SCHPO (O60094 ), DPO5_YEAST (P39985 ), DPOD1_ARATH (Q9LVN7 ), DPOD1_BOVIN (P28339 ), DPOD1_CAEEL (P90829 ), DPOD1_DICDI (Q54N97 ), DPOD1_DROME (P54358 ), DPOD1_HUMAN (P28340 ), DPOD1_MESAU (P97283 ), DPOD1_MOUSE (P52431 ), DPOD1_ORYSJ (Q9LRE6 ), DPOD1_RAT (O54747 ), DPOD1_SOYBN (O48901 ), DPOD_CANAX (P46588 ), DPOD_PLAFK (P30315 ), DPOD_SCHPO (P30316 ), DPOD_YEAST (P15436 ), DPOL1_AERPE (O93745 ), DPOL1_METTH (O27276 ), DPOL1_SACS2 (P26811 ), DPOL1_SULAC (P95690 ), DPOL1_SULOH (O50607 ), DPOL2_AERPE (O93746 ), DPOLA_ARATH (Q9FHA3 ), DPOLA_DICDI (Q54SV8 ), DPOLA_DROME (P26019 ), DPOLA_HUMAN (P09884 ), DPOLA_LEIDO (O00874 ), DPOLA_MOUSE (P33609 ), DPOLA_ORYSJ (O48653 ), DPOLA_OXYTR (Q27152 ), DPOLA_RAT (O89042 ), DPOLA_SCHPO (P28040 ), DPOLA_STENO (Q94636 ), DPOLA_TRYBB (P27727 ), DPOLA_XENLA (Q9DE46 ), DPOLA_YEAST (P13382 ), DPOL_ADE02 (P03261 ), DPOL_ADE04 (P87503 ), DPOL_ADE05 (P04495 ), DPOL_ADE07 (P05664 ), DPOL_ADE12 (P06538 ), DPOL_ADE40 (P48311 ), DPOL_ADEB2 (O72539 ), DPOL_ADEB3 (O72540 ), DPOL_ADECC (Q65946 ), DPOL_ADECT (P87553 ), DPOL_ADEG1 (Q64751 ), DPOL_ADES1 (Q8QNT0 ), DPOL_ADET1 (Q88469 ), DPOL_ALHV1 (O36363 ), DPOL_ARCFU (O29753 ), DPOL_ASFB7 (P42489 ), DPOL_ASFK5 (P0C974 ), DPOL_ASFL6 (P43139 ), DPOL_ASFM2 (P0C972 ), DPOL_ASFP4 (P0C971 ), DPOL_ASFWA (P0C973 ), DPOL_BPB03 (Q37882 ), DPOL_BPCP1 (Q37989 ), DPOL_BPKVM (Q6WI70 ), DPOL_BPM2 (P19894 ), DPOL_BPNF (B7SSM2 ), DPOL_BPPH2 (P03680 ), DPOL_BPPRD (P10479 ), DPOL_BPPZA (P06950 ), DPOL_BPR69 (Q38087 ), DPOL_BPT4 (P04415 ), DPOL_CBEPV (P30319 ), DPOL_DESST (Q7SIG7 ), DPOL_EBVA8 (Q1HVC1 ), DPOL_EBVB9 (P03198 ), DPOL_EBVG (Q3KSP1 ), DPOL_EHV1B (P28858 ), DPOL_EHV1V (Q6S6P1 ), DPOL_EHV2 (P52367 ), DPOL_ELHVK (Q9DKT8 ), DPOL_FOWPN (P21402 ), DPOL_GAHVM (Q9E6N9 ), DPOL_GPCMV (Q69025 ), DPOL_HCMVA (P08546 ), DPOL_HCMVM (Q6SW77 ), DPOL_HHV11 (P04293 ), DPOL_HHV1A (P07917 ), DPOL_HHV1K (P04292 ), DPOL_HHV1S (P09854 ), DPOL_HHV21 (P07918 ), DPOL_HHV2H (P89453 ), DPOL_HHV6U (P28857 ), DPOL_HHV6Z (Q9QJ32 ), DPOL_HHV7J (P52342 ), DPOL_HHV8P (Q2HRD0 ), DPOL_HVAVE (A4KX57 ), DPOL_ICHVA (P28859 ), DPOL_METJA (Q58295 ), DPOL_METVO (P52025 ), DPOL_MONPV (A0A7H0DN44), DPOL_MUHVS (P27172 ), DPOL_NPVAC (P18131 ), DPOL_NPVBM (P41712 ), DPOL_NPVCF (Q90162 ), DPOL_NPVLD (P30318 ), DPOL_NPVOP (Q83948 ), DPOL_ORFN2 (Q84173 ), DPOL_PBCV1 (P30321 ), DPOL_PBCVN (P30320 ), DPOL_POV01 (A7U6F2 ), DPOL_PSHV1 (Q6UDK1 ), DPOL_PYRAB (P0CL77 ), DPOL_PYRAY (P0CL76 ), DPOL_PYRFU (P61875 ), DPOL_PYRGL (Q9HH06 ), DPOL_PYRHO (O59610 ), DPOL_PYRSD (Q51334 ), DPOL_PYRWO (P61876 ), DPOL_RCMVM (Q85428 ), DPOL_RHCM6 (O71121 ), DPOL_RSIV (O70736 ), DPOL_SFAVA (Q779J8 ), DPOL_SHV21 (P24907 ), DPOL_THEGO (P56689 ), DPOL_THEKO (P77933 ), DPOL_THES9 (Q56366 ), DPOL_TNAVC (Q4U3V0 ), DPOL_TUHV1 (Q9YUS3 ), DPOL_TUHV2 (Q9YUS2 ), DPOL_VACCA (O57191 ), DPOL_VACCC (P20509 ), DPOL_VACCW (P06856 ), DPOL_VAR67 (P0DOO5 ), DPOL_VARV (P0DOO6 ), DPOL_VZVD (P09252 ), DPOL_VZVO (Q4JQU7 ), DPOM_ASCIM (P22374 ), DPOM_CLAPU (P22373 ), DPOM_MAIZE (P10582 ), DPOM_NEUCS (P33537 ), DPOM_NEUIN (P33538 ), DPOM_PODAS (Q01529 ), DPOZ_DROME (Q9GSR1 ), DPOZ_SCHPO (Q9P6L6 ), DPOZ_YEAST (P14284 ), REV3L_HUMAN (O60673 ), REV3L_MOUSE (Q61493 ), REV3_ARATH (Q766Z3 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
26 sequences
DPOE_ASHGO (Q752B8 ), DPOE_ASPFU (Q4WXH8 ), DPOE_CANGA (Q6FNY7 ), DPOE_CRYNB (P0CN27 ), DPOE_CRYNJ (P0CN26 ), DPOE_DEBHA (Q6BNG2 ), DPOE_EMENI (O93845 ), DPOE_KLULA (Q6CUS7 ), DPOE_SCHPO (P87154 ), DPOE_USTMA (Q4PFV5 ), DPOE_YARLI (Q6C4J0 ), DPOE_YEAST (P21951 ), DPOL2_SACS2 (Q07635 ), DPOL3_SACS2 (P95979 ), DPOL3_SACSH (O05706 ), DPOL_ABVP (A4ZU91 ), DPOL_HIS1I (Q25BI3 ), DPOL_IIV3 (Q196U0 ), DPOL_IIV6 (Q9QSK2 ), DPOL_OSHVF (Q6R7C9 ), DPOL_THEAG (O33845 ), DPOL_THEFM (P74918 ), DPOL_THEG8 (Q9HH84 ), DPOL_THEHY (Q9HH05 ), DPOL_THELI (P30317 ), DPOM_AGABT (P30322 )» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
2 sequences
LTP_VZVD (P09278 ), LTP_VZVO (Q4JQX9 ) |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ACDG1_METTE (Q50539 ), ACDG2_METTE (Q9C4Z0 ), ACDG_METAC (Q8TH44 ), ATK_DROME (Q9VPF0 ), C99L2_MOUSE (Q8BIF0 ), CRCB2_LEIXX (Q6AHI4 ), E2AK4_HUMAN (Q9P2K8 ), EIF3B_BOMMO (Q1HDZ5 ), PSTB1_VIBCH (Q9KU04 ), PSTB_HYDCU (Q31I88 ), QWRF2_ARATH (Q94AI1 ), RBR3_CANAL (Q5A5M7 ), SCO3_ARATH (Q8GXD9 ), SYA_BRUA4 (A6X0E9 ), Y8444_DICDI (Q1ZXR0 )» more |
PDB [Detailed view] |
213 PDB
1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; 1WAJ; 1WN7; 1WNS; 1XHX; 1XHZ; 1XI1; 2ATQ; 2DTU; 2DY4; 2EX3; 2GV9; 2JGU; 2OYQ; 2OZM; 2OZS; 2P5G; 2P5O; 2PY5; 2PYJ; 2PYL; 2PZS; 2VWJ; 2VWK; 2XHB; 3A2F; 3CFO; 3CFP; 3CFR; 3CQ8; 3IAY; 3K57; 3K58; 3K59; 3K5L; 3K5M; 3K5N; 3K5O; 3KD1; 3KD5; 3L8B; 3LDS; 3LZI; 3LZJ; 3MAQ; 3NAE; 3NCI; 3NDK; 3NE6; 3NGI; 3NHG; 3QEI; 3QEP; 3QER; 3QES; 3QET; 3QEV; 3QEW; 3QEX; 3QNN; 3QNO; 3RMA; 3RMB; 3RMC; 3RMD; 3RWU; 3S9H; 3SCX; 3SI6; 3SJJ; 3SNN; 3SPY; 3SPZ; 3SQ0; 3SQ1; 3SQ2; 3SQ4; 3SUN; 3SUO; 3SUP; 3SUQ; 3TAB; 3TAE; 3TAF; 3TAG; 3UIQ; 4AHC; 4AIL; 4B08; 4DTJ; 4DTM; 4DTN; 4DTO; 4DTP; 4DTR; 4DTS; 4DTU; 4DTX; 4DU1; 4DU3; 4DU4; 4E3S; 4FJ5; 4FJ7; 4FJ8; 4FJ9; 4FJG; 4FJH; 4FJI; 4FJJ; 4FJK; 4FJL; 4FJM; 4FJN; 4FJX; 4FK0; 4FK2; 4FK4; 4FLT; 4FLU; 4FLV; 4FLW; 4FLX; 4FLY; 4FLZ; 4FM0; 4FM1; 4FM2; 4FVM; 4FXD; 4I9L; 4I9Q; 4J2A; 4J2B; 4J2D; 4J2E; 4K8X; 4K8Z; 4KHN; 4KHQ; 4KHS; 4KHU; 4KHW; 4KHY; 4KI4; 4KI6; 4M3R; 4M3T; 4M3U; 4M3W; 4M3X; 4M3Y; 4M3Z; 4M41; 4M42; 4M45; 4Q5V; 4QCL; 5EXR; 5H12; 5IUD; 5N2E; 5N2G; 5N2H; 5OMF; 5OMQ; 5OMV; 6AS7; 6IS7; 6ISF; 6ISG; 6ISH; 6ISI; 6P1H; 6Q4T; 6S1M; 6S1N; 6S1O; 6TNY; 6TNZ; 6V8P; 6V93; 7B06; 7B07; 7B08; 7B0F; 7B0G; 7B0H; 7F4Y; 7KC0; 7LUF; 7LXD; 7N2M; 7OM3; 7OMB; 7OMG; 7OPL; 7RSU; 7S0T; 7U5C; 8D0B; 8D0K » more |