PROSITE logo

PROSITE entry PS00116


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] DNA_POLYMERASE_B
Accession [info] PS00116
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00107

Name and characterization of the entry

Description [info] DNA polymerase family B signature.
Pattern [info] 
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 165 in 165 different sequences
Number of true positive hits 148 in 148 different sequences
Number of 'unknown' hits 2 in 2 different sequences
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 26
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 90.80 %
Recall (true positives / (true positives + false negatives)) 85.06 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 148 sequences 

DPO1_KLULA  (P09804), DPO2_ECOLI  (P21189), DPO2_KLULA  (P05468), 

DPO5_SCHPO  (O60094), DPO5_YEAST  (P39985), DPOD1_ARATH (Q9LVN7), 
DPOD1_BOVIN (P28339), DPOD1_CAEEL (P90829), DPOD1_DICDI (Q54N97), 
DPOD1_DROME (P54358), DPOD1_HUMAN (P28340), DPOD1_MESAU (P97283), 
DPOD1_MOUSE (P52431), DPOD1_ORYSJ (Q9LRE6), DPOD1_RAT   (O54747), 
DPOD1_SOYBN (O48901), DPOD_CANAX  (P46588), DPOD_PLAFK  (P30315), 
DPOD_SCHPO  (P30316), DPOD_YEAST  (P15436), DPOL1_AERPE (O93745), 
DPOL1_METTH (O27276), DPOL1_SACS2 (P26811), DPOL1_SULAC (P95690), 
DPOL1_SULOH (O50607), DPOL2_AERPE (O93746), DPOLA_ARATH (Q9FHA3), 
DPOLA_DICDI (Q54SV8), DPOLA_DROME (P26019), DPOLA_HUMAN (P09884), 
DPOLA_LEIDO (O00874), DPOLA_MOUSE (P33609), DPOLA_ORYSJ (O48653), 
DPOLA_OXYTR (Q27152), DPOLA_RAT   (O89042), DPOLA_SCHPO (P28040), 
DPOLA_STENO (Q94636), DPOLA_TRYBB (P27727), DPOLA_XENLA (Q9DE46), 
DPOLA_YEAST (P13382), DPOL_ADE02  (P03261), DPOL_ADE04  (P87503), 
DPOL_ADE05  (P04495), DPOL_ADE07  (P05664), DPOL_ADE12  (P06538), 
DPOL_ADE40  (P48311), DPOL_ADEB2  (O72539), DPOL_ADEB3  (O72540), 
DPOL_ADECC  (Q65946), DPOL_ADECT  (P87553), DPOL_ADEG1  (Q64751), 
DPOL_ADES1  (Q8QNT0), DPOL_ADET1  (Q88469), DPOL_ALHV1  (O36363), 
DPOL_ARCFU  (O29753), DPOL_ASFB7  (P42489), DPOL_ASFK5  (P0C974), 
DPOL_ASFL6  (P43139), DPOL_ASFM2  (P0C972), DPOL_ASFP4  (P0C971), 
DPOL_ASFWA  (P0C973), DPOL_BPB03  (Q37882), DPOL_BPCP1  (Q37989), 
DPOL_BPKVM  (Q6WI70), DPOL_BPM2   (P19894), DPOL_BPNF   (B7SSM2), 
DPOL_BPPH2  (P03680), DPOL_BPPRD  (P10479), DPOL_BPPZA  (P06950), 
DPOL_BPR69  (Q38087), DPOL_BPT4   (P04415), DPOL_CBEPV  (P30319), 
DPOL_DESST  (Q7SIG7), DPOL_EBVA8  (Q1HVC1), DPOL_EBVB9  (P03198), 
DPOL_EBVG   (Q3KSP1), DPOL_EHV1B  (P28858), DPOL_EHV1V  (Q6S6P1), 
DPOL_EHV2   (P52367), DPOL_ELHVK  (Q9DKT8), DPOL_FOWPN  (P21402), 
DPOL_GAHVM  (Q9E6N9), DPOL_GPCMV  (Q69025), DPOL_HCMVA  (P08546), 
DPOL_HCMVM  (Q6SW77), DPOL_HHV11  (P04293), DPOL_HHV1A  (P07917), 
DPOL_HHV1K  (P04292), DPOL_HHV1S  (P09854), DPOL_HHV21  (P07918), 
DPOL_HHV2H  (P89453), DPOL_HHV6U  (P28857), DPOL_HHV6Z  (Q9QJ32), 
DPOL_HHV7J  (P52342), DPOL_HHV8P  (Q2HRD0), DPOL_HVAVE  (A4KX57), 
DPOL_ICHVA  (P28859), DPOL_METJA  (Q58295), DPOL_METVO  (P52025), 
DPOL_MONPV  (A0A7H0DN44), DPOL_MUHVS  (P27172), DPOL_NPVAC  (P18131), 
DPOL_NPVBM  (P41712), DPOL_NPVCF  (Q90162), DPOL_NPVLD  (P30318), 
DPOL_NPVOP  (Q83948), DPOL_ORFN2  (Q84173), DPOL_PBCV1  (P30321), 
DPOL_PBCVN  (P30320), DPOL_POV01  (A7U6F2), DPOL_PSHV1  (Q6UDK1), 
DPOL_PYRAB  (P0CL77), DPOL_PYRAY  (P0CL76), DPOL_PYRFU  (P61875), 
DPOL_PYRGL  (Q9HH06), DPOL_PYRHO  (O59610), DPOL_PYRSD  (Q51334), 
DPOL_PYRWO  (P61876), DPOL_RCMVM  (Q85428), DPOL_RHCM6  (O71121), 
DPOL_RSIV   (O70736), DPOL_SFAVA  (Q779J8), DPOL_SHV21  (P24907), 
DPOL_THEGO  (P56689), DPOL_THEKO  (P77933), DPOL_THES9  (Q56366), 
DPOL_TNAVC  (Q4U3V0), DPOL_TUHV1  (Q9YUS3), DPOL_TUHV2  (Q9YUS2), 
DPOL_VACCA  (O57191), DPOL_VACCC  (P20509), DPOL_VACCW  (P06856), 
DPOL_VAR67  (P0DOO5), DPOL_VARV   (P0DOO6), DPOL_VZVD   (P09252), 
DPOL_VZVO   (Q4JQU7), DPOM_ASCIM  (P22374), DPOM_CLAPU  (P22373), 
DPOM_MAIZE  (P10582), DPOM_NEUCS  (P33537), DPOM_NEUIN  (P33538), 
DPOM_PODAS  (Q01529), DPOZ_DROME  (Q9GSR1), DPOZ_SCHPO  (Q9P6L6), 
DPOZ_YEAST  (P14284), REV3L_HUMAN (O60673), REV3L_MOUSE (Q61493), 
REV3_ARATH  (Q766Z3)
» more

UniProtKB/Swiss-Prot
False negative sequences		 26 sequences 

DPOE_ASPFU  (Q4WXH8), DPOE_CANGA  (Q6FNY7), DPOE_CRYNB  (P0CN27), 

DPOE_CRYNJ  (P0CN26), DPOE_DEBHA  (Q6BNG2), DPOE_EMENI  (O93845), 
DPOE_EREGS  (Q752B8), DPOE_KLULA  (Q6CUS7), DPOE_SCHPO  (P87154), 
DPOE_USTMA  (Q4PFV5), DPOE_YARLI  (Q6C4J0), DPOE_YEAST  (P21951), 
DPOL2_SACS2 (Q07635), DPOL3_SACS2 (P95979), DPOL3_SACSH (O05706), 
DPOL_ABVP   (A4ZU91), DPOL_HIS1I  (Q25BI3), DPOL_IIV3   (Q196U0), 
DPOL_IIV6   (Q9QSK2), DPOL_OSHVF  (Q6R7C9), DPOL_THEAG  (O33845), 
DPOL_THEFM  (P74918), DPOL_THEG8  (Q9HH84), DPOL_THEHY  (Q9HH05), 
DPOL_THELI  (P30317), DPOM_AGABT  (P30322)
» more

UniProtKB/Swiss-Prot
'Unknown' sequences		 2 sequences 

LTP_VZVD(P09278), LTP_VZVO(Q4JQX9)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			15 sequences
			


			
ACDG1_METTE (Q50539), ACDG2_METTE (Q9C4Z0), ACDG_METAC  (Q8TH44), 

			
ATK_DROME   (Q9VPF0), C99L2_MOUSE (Q8BIF0), E2AK4_HUMAN (Q9P2K8), 
EIF3B_BOMMO (Q1HDZ5), FLUC2_LEIXX (Q6AHI4), PSTB1_VIBCH (Q9KU04), 
PSTB_HYDCU  (Q31I88), QWRF2_ARATH (Q94AI1), RBR3_CANAL  (Q5A5M7), 
SCO3_ARATH  (Q8GXD9), SYA_BRUA4   (A6X0E9), Y8444_DICDI (Q1ZXR0)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			254 PDB
			


			1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; 
			
				1WAJ; 1WN7; 1WNS; 1XHX; 1XHZ; 1XI1; 2ATQ; 2DTU; 2DY4; 2EX3; 2GV9; 2JGU; 
				2OYQ; 2OZM; 2OZS; 2P5G; 2P5O; 2PY5; 2PYJ; 2PYL; 2PZS; 2VWJ; 2VWK; 2XHB; 
				3A2F; 3CFO; 3CFP; 3CFR; 3CQ8; 3IAY; 3K57; 3K58; 3K59; 3K5L; 3K5M; 3K5N; 
				3K5O; 3KD1; 3KD5; 3L8B; 3LDS; 3LZI; 3LZJ; 3MAQ; 3NAE; 3NCI; 3NDK; 3NE6; 
				3NGI; 3NHG; 3QEI; 3QEP; 3QER; 3QES; 3QET; 3QEV; 3QEW; 3QEX; 3QNN; 3QNO; 
				3RMA; 3RMB; 3RMC; 3RMD; 3RWU; 3S9H; 3SCX; 3SI6; 3SJJ; 3SNN; 3SPY; 3SPZ; 
				3SQ0; 3SQ1; 3SQ2; 3SQ4; 3SUN; 3SUO; 3SUP; 3SUQ; 3TAB; 3TAE; 3TAF; 3TAG; 
				3UIQ; 4AHC; 4AIL; 4B08; 4DTJ; 4DTM; 4DTN; 4DTO; 4DTP; 4DTR; 4DTS; 4DTU; 
				4DTX; 4DU1; 4DU3; 4DU4; 4E3S; 4FJ5; 4FJ7; 4FJ8; 4FJ9; 4FJG; 4FJH; 4FJI; 
				4FJJ; 4FJK; 4FJL; 4FJM; 4FJN; 4FJX; 4FK0; 4FK2; 4FK4; 4FLT; 4FLU; 4FLV; 
				4FLW; 4FLX; 4FLY; 4FLZ; 4FM0; 4FM1; 4FM2; 4FVM; 4FXD; 4I9L; 4I9Q; 4J2A; 
				4J2B; 4J2D; 4J2E; 4K8X; 4K8Z; 4KHN; 4KHQ; 4KHS; 4KHU; 4KHW; 4KHY; 4KI4; 
				4KI6; 4M3R; 4M3T; 4M3U; 4M3W; 4M3X; 4M3Y; 4M3Z; 4M41; 4M42; 4M45; 4Q5V; 
				4QCL; 5EXR; 5H12; 5IUD; 5N2E; 5N2G; 5N2H; 5OMF; 5OMQ; 5OMV; 6AS7; 6IS7; 
				6ISF; 6ISG; 6ISH; 6ISI; 6P1H; 6Q4T; 6S1M; 6S1N; 6S1O; 6TNY; 6TNZ; 6V8P; 
				6V93; 7B06; 7B07; 7B08; 7B0F; 7B0G; 7B0H; 7F4Y; 7KC0; 7LUF; 7LXD; 7N2M; 
				7OM3; 7OMB; 7OMG; 7OPL; 7RSU; 7S0T; 7U5C; 8B9A; 8B9B; 8B9C; 8B9D; 8D0B; 
				8D0K; 8D96; 8D9D; 8FOC; 8FOD; 8FOE; 8FOH; 8FOJ; 8FOK; 8G99; 8G9F; 8G9L; 
				8G9N; 8G9O; 8HG1; 8HLZ; 8HM0; 8OJ6; 8OJ7; 8OJA; 8OJB; 8OJC; 8OJD; 8QJ7; 
				8UCU; 8UCV; 8UCW; 8V5M; 8V5N; 8V5O; 8V6G; 8V6H; 8V6I; 8V6J; 8WPE; 8WPF; 
				8WPK; 8WPP
			
			

			» more