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PROSITE entry PS00116


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General information about the entry

Entry name [info] DNA_POLYMERASE_B
Accession [info] PS00116
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00107

Name and characterization of the entry

Description [info] DNA polymerase family B signature.
Pattern [info] 
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.


Total number of hits 165 in 165 different sequences
Number of true positive hits 148 in 148 different sequences
Number of 'unknown' hits 2 in 2 different sequences
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 26
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 90.80 %
Recall (true positives / (true positives + false negatives)) 85.06 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 148 sequences 

DPO1_KLULA  (P09804    ), DPO2_ECOLI  (P21189    ), DPO2_KLULA  (P05468    ), 

DPO5_SCHPO  (O60094    ), DPO5_YEAST  (P39985    ), DPOD1_ARATH (Q9LVN7    ), 
DPOD1_BOVIN (P28339    ), DPOD1_CAEEL (P90829    ), DPOD1_DICDI (Q54N97    ), 
DPOD1_DROME (P54358    ), DPOD1_HUMAN (P28340    ), DPOD1_MESAU (P97283    ), 
DPOD1_MOUSE (P52431    ), DPOD1_ORYSJ (Q9LRE6    ), DPOD1_RAT   (O54747    ), 
DPOD1_SOYBN (O48901    ), DPOD_CANAX  (P46588    ), DPOD_PLAFK  (P30315    ), 
DPOD_SCHPO  (P30316    ), DPOD_YEAST  (P15436    ), DPOL1_AERPE (O93745    ), 
DPOL1_METTH (O27276    ), DPOL1_SACS2 (P26811    ), DPOL1_SULAC (P95690    ), 
DPOL1_SULOH (O50607    ), DPOL2_AERPE (O93746    ), DPOLA_ARATH (Q9FHA3    ), 
DPOLA_DICDI (Q54SV8    ), DPOLA_DROME (P26019    ), DPOLA_HUMAN (P09884    ), 
DPOLA_LEIDO (O00874    ), DPOLA_MOUSE (P33609    ), DPOLA_ORYSJ (O48653    ), 
DPOLA_OXYTR (Q27152    ), DPOLA_RAT   (O89042    ), DPOLA_SCHPO (P28040    ), 
DPOLA_STENO (Q94636    ), DPOLA_TRYBB (P27727    ), DPOLA_XENLA (Q9DE46    ), 
DPOLA_YEAST (P13382    ), DPOL_ADE02  (P03261    ), DPOL_ADE04  (P87503    ), 
DPOL_ADE05  (P04495    ), DPOL_ADE07  (P05664    ), DPOL_ADE12  (P06538    ), 
DPOL_ADE40  (P48311    ), DPOL_ADEB2  (O72539    ), DPOL_ADEB3  (O72540    ), 
DPOL_ADECC  (Q65946    ), DPOL_ADECT  (P87553    ), DPOL_ADEG1  (Q64751    ), 
DPOL_ADES1  (Q8QNT0    ), DPOL_ADET1  (Q88469    ), DPOL_ALHV1  (O36363    ), 
DPOL_ARCFU  (O29753    ), DPOL_ASFB7  (P42489    ), DPOL_ASFK5  (P0C974    ), 
DPOL_ASFL6  (P43139    ), DPOL_ASFM2  (P0C972    ), DPOL_ASFP4  (P0C971    ), 
DPOL_ASFWA  (P0C973    ), DPOL_BPB03  (Q37882    ), DPOL_BPCP1  (Q37989    ), 
DPOL_BPKVM  (Q6WI70    ), DPOL_BPM2   (P19894    ), DPOL_BPNF   (B7SSM2    ), 
DPOL_BPPH2  (P03680    ), DPOL_BPPRD  (P10479    ), DPOL_BPPZA  (P06950    ), 
DPOL_BPR69  (Q38087    ), DPOL_BPT4   (P04415    ), DPOL_CBEPV  (P30319    ), 
DPOL_DESST  (Q7SIG7    ), DPOL_EBVA8  (Q1HVC1    ), DPOL_EBVB9  (P03198    ), 
DPOL_EBVG   (Q3KSP1    ), DPOL_EHV1B  (P28858    ), DPOL_EHV1V  (Q6S6P1    ), 
DPOL_EHV2   (P52367    ), DPOL_ELHVK  (Q9DKT8    ), DPOL_FOWPN  (P21402    ), 
DPOL_GAHVM  (Q9E6N9    ), DPOL_GPCMV  (Q69025    ), DPOL_HCMVA  (P08546    ), 
DPOL_HCMVM  (Q6SW77    ), DPOL_HHV11  (P04293    ), DPOL_HHV1A  (P07917    ), 
DPOL_HHV1K  (P04292    ), DPOL_HHV1S  (P09854    ), DPOL_HHV21  (P07918    ), 
DPOL_HHV2H  (P89453    ), DPOL_HHV6U  (P28857    ), DPOL_HHV6Z  (Q9QJ32    ), 
DPOL_HHV7J  (P52342    ), DPOL_HHV8P  (Q2HRD0    ), DPOL_HVAVE  (A4KX57    ), 
DPOL_ICHVA  (P28859    ), DPOL_METJA  (Q58295    ), DPOL_METVO  (P52025    ), 
DPOL_MONPV  (A0A7H0DN44), DPOL_MUHVS  (P27172    ), DPOL_NPVAC  (P18131    ), 
DPOL_NPVBM  (P41712    ), DPOL_NPVCF  (Q90162    ), DPOL_NPVLD  (P30318    ), 
DPOL_NPVOP  (Q83948    ), DPOL_ORFN2  (Q84173    ), DPOL_PBCV1  (P30321    ), 
DPOL_PBCVN  (P30320    ), DPOL_POV01  (A7U6F2    ), DPOL_PSHV1  (Q6UDK1    ), 
DPOL_PYRAB  (P0CL77    ), DPOL_PYRAY  (P0CL76    ), DPOL_PYRFU  (P61875    ), 
DPOL_PYRGL  (Q9HH06    ), DPOL_PYRHO  (O59610    ), DPOL_PYRSD  (Q51334    ), 
DPOL_PYRWO  (P61876    ), DPOL_RCMVM  (Q85428    ), DPOL_RHCM6  (O71121    ), 
DPOL_RSIV   (O70736    ), DPOL_SFAVA  (Q779J8    ), DPOL_SHV21  (P24907    ), 
DPOL_THEGO  (P56689    ), DPOL_THEKO  (P77933    ), DPOL_THES9  (Q56366    ), 
DPOL_TNAVC  (Q4U3V0    ), DPOL_TUHV1  (Q9YUS3    ), DPOL_TUHV2  (Q9YUS2    ), 
DPOL_VACCA  (O57191    ), DPOL_VACCC  (P20509    ), DPOL_VACCW  (P06856    ), 
DPOL_VAR67  (P0DOO5    ), DPOL_VARV   (P0DOO6    ), DPOL_VZVD   (P09252    ), 
DPOL_VZVO   (Q4JQU7    ), DPOM_ASCIM  (P22374    ), DPOM_CLAPU  (P22373    ), 
DPOM_MAIZE  (P10582    ), DPOM_NEUCS  (P33537    ), DPOM_NEUIN  (P33538    ), 
DPOM_PODAS  (Q01529    ), DPOZ_DROME  (Q9GSR1    ), DPOZ_SCHPO  (Q9P6L6    ), 
DPOZ_YEAST  (P14284    ), REV3L_HUMAN (O60673    ), REV3L_MOUSE (Q61493    ), 
REV3_ARATH  (Q766Z3    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 26 sequences 

DPOE_ASHGO  (Q752B8    ), DPOE_ASPFU  (Q4WXH8    ), DPOE_CANGA  (Q6FNY7    ), 

DPOE_CRYNB  (P0CN27    ), DPOE_CRYNJ  (P0CN26    ), DPOE_DEBHA  (Q6BNG2    ), 
DPOE_EMENI  (O93845    ), DPOE_KLULA  (Q6CUS7    ), DPOE_SCHPO  (P87154    ), 
DPOE_USTMA  (Q4PFV5    ), DPOE_YARLI  (Q6C4J0    ), DPOE_YEAST  (P21951    ), 
DPOL2_SACS2 (Q07635    ), DPOL3_SACS2 (P95979    ), DPOL3_SACSH (O05706    ), 
DPOL_ABVP   (A4ZU91    ), DPOL_HIS1I  (Q25BI3    ), DPOL_IIV3   (Q196U0    ), 
DPOL_IIV6   (Q9QSK2    ), DPOL_OSHVF  (Q6R7C9    ), DPOL_THEAG  (O33845    ), 
DPOL_THEFM  (P74918    ), DPOL_THEG8  (Q9HH84    ), DPOL_THEHY  (Q9HH05    ), 
DPOL_THELI  (P30317    ), DPOM_AGABT  (P30322    )
» more

UniProtKB/Swiss-Prot
'Unknown' sequences		 2 sequences 

LTP_VZVD    (P09278    ), LTP_VZVO    (Q4JQX9    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			15 sequences
			


			
ACDG1_METTE (Q50539    ), ACDG2_METTE (Q9C4Z0    ), ACDG_METAC  (Q8TH44    ), 

			
ATK_DROME   (Q9VPF0    ), C99L2_MOUSE (Q8BIF0    ), CRCB2_LEIXX (Q6AHI4    ), 
E2AK4_HUMAN (Q9P2K8    ), EIF3B_BOMMO (Q1HDZ5    ), PSTB1_VIBCH (Q9KU04    ), 
PSTB_HYDCU  (Q31I88    ), QWRF2_ARATH (Q94AI1    ), RBR3_CANAL  (Q5A5M7    ), 
SCO3_ARATH  (Q8GXD9    ), SYA_BRUA4   (A6X0E9    ), Y8444_DICDI (Q1ZXR0    )


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			213 PDB
			


			1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; 
			
				1WAJ; 1WN7; 1WNS; 1XHX; 1XHZ; 1XI1; 2ATQ; 2DTU; 2DY4; 2EX3; 2GV9; 2JGU; 
				2OYQ; 2OZM; 2OZS; 2P5G; 2P5O; 2PY5; 2PYJ; 2PYL; 2PZS; 2VWJ; 2VWK; 2XHB; 
				3A2F; 3CFO; 3CFP; 3CFR; 3CQ8; 3IAY; 3K57; 3K58; 3K59; 3K5L; 3K5M; 3K5N; 
				3K5O; 3KD1; 3KD5; 3L8B; 3LDS; 3LZI; 3LZJ; 3MAQ; 3NAE; 3NCI; 3NDK; 3NE6; 
				3NGI; 3NHG; 3QEI; 3QEP; 3QER; 3QES; 3QET; 3QEV; 3QEW; 3QEX; 3QNN; 3QNO; 
				3RMA; 3RMB; 3RMC; 3RMD; 3RWU; 3S9H; 3SCX; 3SI6; 3SJJ; 3SNN; 3SPY; 3SPZ; 
				3SQ0; 3SQ1; 3SQ2; 3SQ4; 3SUN; 3SUO; 3SUP; 3SUQ; 3TAB; 3TAE; 3TAF; 3TAG; 
				3UIQ; 4AHC; 4AIL; 4B08; 4DTJ; 4DTM; 4DTN; 4DTO; 4DTP; 4DTR; 4DTS; 4DTU; 
				4DTX; 4DU1; 4DU3; 4DU4; 4E3S; 4FJ5; 4FJ7; 4FJ8; 4FJ9; 4FJG; 4FJH; 4FJI; 
				4FJJ; 4FJK; 4FJL; 4FJM; 4FJN; 4FJX; 4FK0; 4FK2; 4FK4; 4FLT; 4FLU; 4FLV; 
				4FLW; 4FLX; 4FLY; 4FLZ; 4FM0; 4FM1; 4FM2; 4FVM; 4FXD; 4I9L; 4I9Q; 4J2A; 
				4J2B; 4J2D; 4J2E; 4K8X; 4K8Z; 4KHN; 4KHQ; 4KHS; 4KHU; 4KHW; 4KHY; 4KI4; 
				4KI6; 4M3R; 4M3T; 4M3U; 4M3W; 4M3X; 4M3Y; 4M3Z; 4M41; 4M42; 4M45; 4Q5V; 
				4QCL; 5EXR; 5H12; 5IUD; 5N2E; 5N2G; 5N2H; 5OMF; 5OMQ; 5OMV; 6AS7; 6IS7; 
				6ISF; 6ISG; 6ISH; 6ISI; 6P1H; 6Q4T; 6S1M; 6S1N; 6S1O; 6TNY; 6TNZ; 6V8P; 
				6V93; 7B06; 7B07; 7B08; 7B0F; 7B0G; 7B0H; 7F4Y; 7KC0; 7LUF; 7LXD; 7N2M; 
				7OM3; 7OMB; 7OMG; 7OPL; 7RSU; 7S0T; 7U5C; 8D0B; 8D0K
			
			

			» more