PROSITE entry PS00116
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General information about the entry
Entry name [info] | DNA_POLYMERASE_B |
Accession [info] | PS00116 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00107 |
Name and characterization of the entry
Description [info] | DNA polymerase family B signature. |
Pattern [info] |
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC]. |
Numerical results [info]
Total number of hits | 165 in 165 different sequences |
Number of true positive hits | 148 in 148 different sequences |
Number of 'unknown' hits | 2 in 2 different sequences |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 26 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 90.80 % |
Recall (true positives / (true positives + false negatives)) | 85.06 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
148 sequences
DPO1_KLULA (P09804), DPO2_ECOLI (P21189), DPO2_KLULA (P05468), DPO5_SCHPO (O60094), DPO5_YEAST (P39985), DPOD1_ARATH (Q9LVN7), DPOD1_BOVIN (P28339), DPOD1_CAEEL (P90829), DPOD1_DICDI (Q54N97), DPOD1_DROME (P54358), DPOD1_HUMAN (P28340), DPOD1_MESAU (P97283), DPOD1_MOUSE (P52431), DPOD1_ORYSJ (Q9LRE6), DPOD1_RAT (O54747), DPOD1_SOYBN (O48901), DPOD_CANAX (P46588), DPOD_PLAFK (P30315), DPOD_SCHPO (P30316), DPOD_YEAST (P15436), DPOL1_AERPE (O93745), DPOL1_METTH (O27276), DPOL1_SACS2 (P26811), DPOL1_SULAC (P95690), DPOL1_SULOH (O50607), DPOL2_AERPE (O93746), DPOLA_ARATH (Q9FHA3), DPOLA_DICDI (Q54SV8), DPOLA_DROME (P26019), DPOLA_HUMAN (P09884), DPOLA_LEIDO (O00874), DPOLA_MOUSE (P33609), DPOLA_ORYSJ (O48653), DPOLA_OXYTR (Q27152), DPOLA_RAT (O89042), DPOLA_SCHPO (P28040), DPOLA_STENO (Q94636), DPOLA_TRYBB (P27727), DPOLA_XENLA (Q9DE46), DPOLA_YEAST (P13382), DPOL_ADE02 (P03261), DPOL_ADE04 (P87503), DPOL_ADE05 (P04495), DPOL_ADE07 (P05664), DPOL_ADE12 (P06538), DPOL_ADE40 (P48311), DPOL_ADEB2 (O72539), DPOL_ADEB3 (O72540), DPOL_ADECC (Q65946), DPOL_ADECT (P87553), DPOL_ADEG1 (Q64751), DPOL_ADES1 (Q8QNT0), DPOL_ADET1 (Q88469), DPOL_ALHV1 (O36363), DPOL_ARCFU (O29753), DPOL_ASFB7 (P42489), DPOL_ASFK5 (P0C974), DPOL_ASFL6 (P43139), DPOL_ASFM2 (P0C972), DPOL_ASFP4 (P0C971), DPOL_ASFWA (P0C973), DPOL_BPB03 (Q37882), DPOL_BPCP1 (Q37989), DPOL_BPKVM (Q6WI70), DPOL_BPM2 (P19894), DPOL_BPNF (B7SSM2), DPOL_BPPH2 (P03680), DPOL_BPPRD (P10479), DPOL_BPPZA (P06950), DPOL_BPR69 (Q38087), DPOL_BPT4 (P04415), DPOL_CBEPV (P30319), DPOL_DESST (Q7SIG7), DPOL_EBVA8 (Q1HVC1), DPOL_EBVB9 (P03198), DPOL_EBVG (Q3KSP1), DPOL_EHV1B (P28858), DPOL_EHV1V (Q6S6P1), DPOL_EHV2 (P52367), DPOL_ELHVK (Q9DKT8), DPOL_FOWPN (P21402), DPOL_GAHVM (Q9E6N9), DPOL_GPCMV (Q69025), DPOL_HCMVA (P08546), DPOL_HCMVM (Q6SW77), DPOL_HHV11 (P04293), DPOL_HHV1A (P07917), DPOL_HHV1K (P04292), DPOL_HHV1S (P09854), DPOL_HHV21 (P07918), DPOL_HHV2H (P89453), DPOL_HHV6U (P28857), DPOL_HHV6Z (Q9QJ32), DPOL_HHV7J (P52342), DPOL_HHV8P (Q2HRD0), DPOL_HVAVE (A4KX57), DPOL_ICHVA (P28859), DPOL_METJA (Q58295), DPOL_METVO (P52025), DPOL_MONPV (A0A7H0DN44), DPOL_MUHVS (P27172), DPOL_NPVAC (P18131), DPOL_NPVBM (P41712), DPOL_NPVCF (Q90162), DPOL_NPVLD (P30318), DPOL_NPVOP (Q83948), DPOL_ORFN2 (Q84173), DPOL_PBCV1 (P30321), DPOL_PBCVN (P30320), DPOL_POV01 (A7U6F2), DPOL_PSHV1 (Q6UDK1), DPOL_PYRAB (P0CL77), DPOL_PYRAY (P0CL76), DPOL_PYRFU (P61875), DPOL_PYRGL (Q9HH06), DPOL_PYRHO (O59610), DPOL_PYRSD (Q51334), DPOL_PYRWO (P61876), DPOL_RCMVM (Q85428), DPOL_RHCM6 (O71121), DPOL_RSIV (O70736), DPOL_SFAVA (Q779J8), DPOL_SHV21 (P24907), DPOL_THEGO (P56689), DPOL_THEKO (P77933), DPOL_THES9 (Q56366), DPOL_TNAVC (Q4U3V0), DPOL_TUHV1 (Q9YUS3), DPOL_TUHV2 (Q9YUS2), DPOL_VACCA (O57191), DPOL_VACCC (P20509), DPOL_VACCW (P06856), DPOL_VAR67 (P0DOO5), DPOL_VARV (P0DOO6), DPOL_VZVD (P09252), DPOL_VZVO (Q4JQU7), DPOM_ASCIM (P22374), DPOM_CLAPU (P22373), DPOM_MAIZE (P10582), DPOM_NEUCS (P33537), DPOM_NEUIN (P33538), DPOM_PODAS (Q01529), DPOZ_DROME (Q9GSR1), DPOZ_SCHPO (Q9P6L6), DPOZ_YEAST (P14284), REV3L_HUMAN (O60673), REV3L_MOUSE (Q61493), REV3_ARATH (Q766Z3)» more
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UniProtKB/Swiss-Prot False negative sequences |
26 sequences
DPOE_ASPFU (Q4WXH8), DPOE_CANGA (Q6FNY7), DPOE_CRYNB (P0CN27), DPOE_CRYNJ (P0CN26), DPOE_DEBHA (Q6BNG2), DPOE_EMENI (O93845), DPOE_EREGS (Q752B8), DPOE_KLULA (Q6CUS7), DPOE_SCHPO (P87154), DPOE_USTMA (Q4PFV5), DPOE_YARLI (Q6C4J0), DPOE_YEAST (P21951), DPOL2_SACS2 (Q07635), DPOL3_SACS2 (P95979), DPOL3_SACSH (O05706), DPOL_ABVP (A4ZU91), DPOL_HIS1I (Q25BI3), DPOL_IIV3 (Q196U0), DPOL_IIV6 (Q9QSK2), DPOL_OSHVF (Q6R7C9), DPOL_THEAG (O33845), DPOL_THEFM (P74918), DPOL_THEG8 (Q9HH84), DPOL_THEHY (Q9HH05), DPOL_THELI (P30317), DPOM_AGABT (P30322)» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
2 sequences
LTP_VZVD(P09278), LTP_VZVO(Q4JQX9) |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ACDG1_METTE (Q50539), ACDG2_METTE (Q9C4Z0), ACDG_METAC (Q8TH44), ATK_DROME (Q9VPF0), C99L2_MOUSE (Q8BIF0), E2AK4_HUMAN (Q9P2K8), EIF3B_BOMMO (Q1HDZ5), FLUC2_LEIXX (Q6AHI4), PSTB1_VIBCH (Q9KU04), PSTB_HYDCU (Q31I88), QWRF2_ARATH (Q94AI1), RBR3_CANAL (Q5A5M7), SCO3_ARATH (Q8GXD9), SYA_BRUA4 (A6X0E9), Y8444_DICDI (Q1ZXR0)» more |
PDB [Detailed view] |
220 PDB
1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; 1WAJ; 1WN7; 1WNS; 1XHX; 1XHZ; 1XI1; 2ATQ; 2DTU; 2DY4; 2EX3; 2GV9; 2JGU; 2OYQ; 2OZM; 2OZS; 2P5G; 2P5O; 2PY5; 2PYJ; 2PYL; 2PZS; 2VWJ; 2VWK; 2XHB; 3A2F; 3CFO; 3CFP; 3CFR; 3CQ8; 3IAY; 3K57; 3K58; 3K59; 3K5L; 3K5M; 3K5N; 3K5O; 3KD1; 3KD5; 3L8B; 3LDS; 3LZI; 3LZJ; 3MAQ; 3NAE; 3NCI; 3NDK; 3NE6; 3NGI; 3NHG; 3QEI; 3QEP; 3QER; 3QES; 3QET; 3QEV; 3QEW; 3QEX; 3QNN; 3QNO; 3RMA; 3RMB; 3RMC; 3RMD; 3RWU; 3S9H; 3SCX; 3SI6; 3SJJ; 3SNN; 3SPY; 3SPZ; 3SQ0; 3SQ1; 3SQ2; 3SQ4; 3SUN; 3SUO; 3SUP; 3SUQ; 3TAB; 3TAE; 3TAF; 3TAG; 3UIQ; 4AHC; 4AIL; 4B08; 4DTJ; 4DTM; 4DTN; 4DTO; 4DTP; 4DTR; 4DTS; 4DTU; 4DTX; 4DU1; 4DU3; 4DU4; 4E3S; 4FJ5; 4FJ7; 4FJ8; 4FJ9; 4FJG; 4FJH; 4FJI; 4FJJ; 4FJK; 4FJL; 4FJM; 4FJN; 4FJX; 4FK0; 4FK2; 4FK4; 4FLT; 4FLU; 4FLV; 4FLW; 4FLX; 4FLY; 4FLZ; 4FM0; 4FM1; 4FM2; 4FVM; 4FXD; 4I9L; 4I9Q; 4J2A; 4J2B; 4J2D; 4J2E; 4K8X; 4K8Z; 4KHN; 4KHQ; 4KHS; 4KHU; 4KHW; 4KHY; 4KI4; 4KI6; 4M3R; 4M3T; 4M3U; 4M3W; 4M3X; 4M3Y; 4M3Z; 4M41; 4M42; 4M45; 4Q5V; 4QCL; 5EXR; 5H12; 5IUD; 5N2E; 5N2G; 5N2H; 5OMF; 5OMQ; 5OMV; 6AS7; 6IS7; 6ISF; 6ISG; 6ISH; 6ISI; 6P1H; 6Q4T; 6S1M; 6S1N; 6S1O; 6TNY; 6TNZ; 6V8P; 6V93; 7B06; 7B07; 7B08; 7B0F; 7B0G; 7B0H; 7F4Y; 7KC0; 7LUF; 7LXD; 7N2M; 7OM3; 7OMB; 7OMG; 7OPL; 7RSU; 7S0T; 7U5C; 8D0B; 8D0K; 8D96; 8D9D; 8G99; 8G9F; 8G9L; 8G9N; 8G9O » more |