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PROSITE entry PS00180


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General information about the entry

Entry name [info] GLNA_1
Accession [info] PS00180
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00162

Name and characterization of the entry

Description [info] Glutamine synthetase signature 1.
Pattern [info] 
[FYWL]-D-G-S-S-x(6,8)-[DENQSTAK]-[SA]-[DE]-x(2)-[LIVMFY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 167 in 167 different sequences
Number of true positive hits 155 in 155 different sequences
Number of 'unknown' hits 0
Number of false positive hits 12 in 12 different sequences
Number of false negative sequences 28
Number of 'partial' sequences 6
Precision (true positives / (true positives + false positives)) 92.81 %
Recall (true positives / (true positives + false negatives)) 84.70 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 155 sequences 

3HAPM_CUPPJ (Q46ZL2), GLN11_ARATH (Q56WN1), GLN11_ORYSJ (P14656), 

GLN12_ARATH (Q8LCE1), GLN12_ORYSJ (P14654), GLN13_ARATH (Q9LVI8), 
GLN13_ORYSJ (Q4W8D0), GLN14_ARATH (Q9FMD9), GLN15_ARATH (Q8GXW5), 
GLN1A_BACCE (P19064), GLN1A_BACSU (P12425), GLN1A_CLOSA (P10656), 
GLN1A_LACDE (P45627), GLN1A_LACLA (Q9CDL9), GLN1A_STAAC (Q5HGC3), 
GLN1A_STAAM (P60890), GLN1A_STAAN (P99095), GLN1A_STAAR (Q6GHC6), 
GLN1A_STAAS (Q6G9Q4), GLN1A_STAAU (P0A040), GLN1A_STAAW (P0A039), 
GLN1A_STAEQ (Q5HPN2), GLN1A_STAES (Q8CSR8), GLN1A_THEMA (P36205), 
GLN1B_ACIFR (P07804), GLN1B_AZOBR (P10583), GLN1B_AZOC5 (P94126), 
GLN1B_AZOVI (P22248), GLN1B_BRADU (P05457), GLN1B_CERSP (P43518), 
GLN1B_ECO57 (P0A9C7), GLN1B_ECOL6 (P0A9C6), GLN1B_ECOLI (P0A9C5), 
GLN1B_FRAAL (P46033), GLN1B_HAEIN (P43794), GLN1B_METCA (P15124), 
GLN1B_MICDP (P33035), GLN1B_MYCBO (P0A591), GLN1B_MYCS2 (A0R079), 
GLN1B_MYCTO (P9WN38), GLN1B_MYCTU (P9WN39), GLN1B_NEIGO (P25821), 
GLN1B_NOSS1 (P00964), GLN1B_PASMU (Q9CLP2), GLN1B_PICP2 (P28605), 
GLN1B_PROHU (P28786), GLN1B_PSEAE (Q9HU65), GLN1B_PSETA (Q3V5W6), 
GLN1B_RHIME (Q59747), GLN1B_RHOCA (P13499), GLN1B_SALTI (P0A1P7), 
GLN1B_SALTY (P0A1P6), GLN1B_SHIFL (P0A9C8), GLN1B_STRCO (P15106), 
GLN1B_STRFL (P77958), GLN1B_STRVR (Q05542), GLN1B_SYNY3 (P77961), 
GLN1B_VIBAL (P19904), GLN1B_VIBCH (Q9KNJ2), GLNA1_ALNGL (O04867), 
GLNA1_CHLRE (Q42688), GLNA1_DAUCA (O22504), GLNA1_DROME (P20477), 
GLNA1_LOTJA (Q42899), GLNA1_MAIZE (P38559), GLNA1_MEDSA (P04078), 
GLNA1_METMA (Q8PY99), GLNA1_PEA   (P08282), GLNA1_PHAVU (P04770), 
GLNA1_SOYBN (P24099), GLNA1_VITVI (P51118), GLNA2_ARATH (Q43127), 
GLNA2_BRADU (P04772), GLNA2_CHLRE (Q42689), GLNA2_DAUCA (O22506), 
GLNA2_DROME (P20478), GLNA2_FRAAL (P20805), GLNA2_HORVU (P13564), 
GLNA2_MAIZE (P38560), GLNA2_MEDSA (Q9XQ94), GLNA2_ORYSJ (P14655), 
GLNA2_PEA   (P08281), GLNA2_PHAVU (P04771), GLNA2_RHILP (Q02154), 
GLNA2_RHIML (P45626), GLNA2_SOYBN (O82560), GLNA2_STRHY (P22878), 
GLNA2_STRVR (P19432), GLNA2_VITVI (P51119), GLNA3_HALMT (I3R176), 
GLNA3_HORVU (Q06378), GLNA3_LUPAN (P14636), GLNA3_MAIZE (P38561), 
GLNA3_MEDSA (Q43785), GLNA3_PEA   (P07694), GLNA3_PHAVU (P00965), 
GLNA4_MAIZE (P38562), GLNA4_PEA   (Q43066), GLNA4_PHAVU (P15102), 
GLNA5_MAIZE (P38563), GLNAC_BRANA (Q42624), GLNAC_MAIZE (P25462), 
GLNA_ACOCA  (Q9QY94), GLNA_AGABI  (O00088), GLNA_AMAMU  (Q8X169), 
GLNA_BOVIN  (P15103), GLNA_CAEEL  (P34497), GLNA_CANGA  (Q6FMT6), 
GLNA_CANLF  (Q8HZM5), GLNA_CHICK  (P16580), GLNA_COLGL  (Q12613), 
GLNA_CRIGR  (P04773), GLNA_CRYNB  (P0CN85), GLNA_CRYNJ  (P0CN84), 
GLNA_DEBHA  (Q6B4U7), GLNA_EMENI  (Q96V52), GLNA_EREGS  (Q75BT9), 
GLNA_FUSSH  (Q9UUN6), GLNA_GIBFU  (Q9C2U9), GLNA_HALSA  (Q9HNI2), 
GLNA_HALVD  (P43386), GLNA_HEBCY  (Q96UV5), GLNA_HUMAN  (P15104), 
GLNA_KLULA  (Q874T6), GLNA_LACSA  (P23712), GLNA_LUPLU  (P52782), 
GLNA_MACFA  (Q4R7U3), GLNA_METJA  (Q60182), GLNA_METMP  (O59648), 
GLNA_METTH  (O27612), GLNA_METVO  (P21154), GLNA_MIMIV  (Q5UR44), 
GLNA_MOUSE  (P15105), GLNA_NEUCR  (Q86ZF9), GLNA_NICPL  (P12424), 
GLNA_PANAR  (Q04831), GLNA_PIG(P46410), GLNA_PINSY  (P52783), 
GLNA_PYRAB  (Q9UY99), GLNA_PYRFU  (Q05907), GLNA_PYRHO  (O58097), 
GLNA_PYRWO  (P36687), GLNA_RAT(P09606), GLNA_SACS2  (P23794), 
GLNA_SCHPO  (Q09179), GLNA_SQUAC  (P41320), GLNA_SUIBO  (Q8J1R3), 
GLNA_SULAC  (Q9HH09), GLNA_THEKO  (O08467), GLNA_THET8  (Q5SIP0), 
GLNA_TUBBO  (Q86ZU6), GLNA_VIGAC  (P32289), GLNA_XENLA  (P51121), 
GLNA_YARLI  (Q6C3E0), GLNA_YEAST  (P32288)
» more

UniProtKB/Swiss-Prot
False negative sequences		 28 sequences 

GLN1A_MYCBO (P64246), GLN1A_MYCS2 (A0R083), GLN1A_MYCTO (P9WN36), 

GLN1A_MYCTU (P9WN37), GLN1B_AQUAE (O66514), GLN1B_HELPJ (Q9ZLW5), 
GLN1B_HELPY (P94845), GLN1B_RHILV (P09826), GLNA1_DICDI (Q86B00), 
GLNA2_DICDI (P0C7B6), GLNA2_HALMT (I3R584), GLNA2_STRCO (Q9RDS6), 
GLNA3_BACFR (P15623), GLNA3_BUTFI (Q05650), GLNA3_DICDI (Q54WR9), 
GLNA3_RHILP (P31592), GLNA3_RHIME (O87393), GLNA3_STRCO (Q9KZC7), 
GLNA4_STRCO (O88070), GLNA_ARCFU  (O29313), GMAS_METMY  (A9ZPH9), 
GMAS_METUF  (F5RH07), LGSN_CANLF  (Q1ZZS1), LGSN_HUMAN  (Q5TDP6), 
LGSN_MOUSE  (Q8CIX8), LGSN_RABIT  (Q0GA40), LGSN_RAT(Q7TT51), 
PUUA_ECOLI  (P78061)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 6 sequences 

GLN1B_PHOLP (P20479), GLN1B_TRITH (P51120), GLNA2_EMIHU (P81643), 

GLNA2_PINPS (P81107), GLNA_DUNSA  (P11600), GLNA_VITSX  (P85087)
» more

UniProtKB/Swiss-Prot
False positive sequences		 12 sequences 

BGBP2_MANSE (Q8ISB6), COR2A_BOVIN (Q32LP9), COR2A_HUMAN (Q92828), 

COR2A_MOUSE (Q8C0P5), EAE_ECO11   (O31000), EAE_ECO27   (P19809), 
EAE_ECO57   (P43261), GLYAR_HALSA (Q9HHR2), SPZ2A_WHEAT (Q9ST57), 
SPZ2B_WHEAT (P93692), TRM82_ASPFC (B0XNT4), TRM82_ASPFU (Q4WJR4)
» more

PDB
[Detailed view]		 43 PDB

1F1H; 1F52; 1FPY; 1HTO; 1HTQ; 1LGR; 2BVC; 2D3A; 2D3B; 2D3C; 2GLS; 2LGS; 2OJW; 2QC8; 2UU7; 2WGS; 2WHI; 3FKY; 3NG0; 3ZXR; 3ZXV; 4ACF; 4LNF; 4LNI; 4LNK; 4LNN; 4LNO; 4S0R; 4XYC; 5LDF; 7CPR; 7EVT; 7U5N; 7W85; 8DNU; 8ECY; 8FBP; 8PVG; 8TFB; 8TFC; 8TFK; 8TGE; 8UFJ
» more