PROSITE logo

PROSITE entry PS00196


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info] 
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 170 in 169 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 1
Number of false positive hits 79 in 78 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 53.25 %
Recall (true positives / (true positives + false negatives)) 87.38 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 90 sequences 

AMCY_METEA  (P04172), AMCY_PARDE  (P22364), AMCY_PARVE  (P22365), 

AURA_CHLAA  (Q8RMH6), AURB_CHLAA  (P27197), AZUP_ACHCY  (P19567), 
AZUP_ALCFA  (P04377), AZUP_METEA  (P04171), AZUP_PARDE  (P80649), 
AZUP_PARPN  (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ  (P12334), 
AZUR2_ALCXX (P56275), AZUR2_METJ  (P12335), AZUR_ACHDE  (P00280), 
AZUR_ALCFA  (P00281), AZUR_ALCSP  (P00279), AZUR_BORBR  (P0A321), 
AZUR_BORPA  (P0A322), AZUR_BORPE  (P0A320), AZUR_PSEAE  (P00282), 
AZUR_PSECL  (P00286), AZUR_PSEDE  (P00283), AZUR_PSEFA  (P80546), 
AZUR_PSEFB  (P00284), AZUR_PSEFC  (P00285), AZUR_PSEPU  (P34097), 
BABL_CUCSA  (P00303), BCB1_ARATH  (Q07488), BCP_PEA (Q41001), 
CPC_CUCSA   (P29602), H81_NEIGO   (P07211), H8_NEIMA(P57025), 
H8_NEIMB(P57026), H8_NEIMF(P07212), HCY_NATPH   (P39442), 
MAVI_CUCPE  (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), 
PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), 
PLAS2_TOBAC (P35477), PLAS_ANAVA  (P0C178), PLAS_CAPBU  (P00294), 
PLAS_CHLRE  (P18068), PLAS_CUCPE  (P00292), PLAS_CUCSA  (P00293), 
PLAS_DAUCA  (P20422), PLAS_DRYCA  (Q7SIB8), PLAS_GINBI  (P84338), 
PLAS_GLOC7  (B7KAE8), PLAS_HORVU  (P08248), PLAS_LACSA  (P00290), 
PLAS_MERPE  (P00295), PLAS_NOSP7  (B2IVD7), PLAS_NOSS1  (P46444), 
PLAS_NOSSO  (O52830), PLAS_ORYSI  (A2Y886), PLAS_ORYSJ  (Q0DFC9), 
PLAS_PEA(P16002), PLAS_PETCR  (P17341), PLAS_PHAVU  (P00287), 
PLAS_PHOLA  (Q51883), PLAS_PHYPA  (Q9SXW9), PLAS_PROHO  (P50057), 
PLAS_RUMOB  (P00298), PLAS_SAMNI  (P00291), PLAS_SCEFU  (P00300), 
PLAS_SILLB  (P07030), PLAS_SOLCR  (P00297), PLAS_SOLLC  (P17340), 
PLAS_SOLTU  (P00296), PLAS_SPIOL  (P00289), PLAS_SYNE7  (P55020), 
PLAS_SYNJB  (Q2JHE1), PLAS_SYNP6  (Q5N4W8), PLAS_SYNY3  (P21697), 
PLAS_TETOB  (P26956), PLAS_TRIV2  (Q3M9H8), PLAS_ULVAR  (P13133), 
PLAS_ULVPE  (P56274), PLAS_ULVPR  (P07465), PLAS_VICFA  (P00288), 
RUS1_ACIFR  (P23742), RUS2_ACIFI  (P0C918), RUS_ACIF2   (B7JAQ0), 
STEL_TOXVR  (P00302), UCC1_ARATH  (O82081), UMEC_ARMRU  (P42849)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

AZUP_RHILV  (Q52825), AZUR_METFK  (Q50400), BABL_ARATH  (Q8LG89), 

BABL_LILLO  (P60496), BCB2_ARATH  (O80517), BCB3_ARATH  (Q96316), 
BCP1A_MEDTR (G7L0H3), BCP1B_MEDTR (A0A072U307), BCP_PETHY   (A0A0M4FTF3), 
CUPR1_ARTBC (P0DN32), MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), 
PLAS_FRIAG  (O22646)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

PLAS_MICAE  (P10625), PLAS_THAOC  (P84800)


				
	

	

		UniProtKB/Swiss-Prot
'Unknown' sequences		
		
			1 sequence
			


			
GABR2_CAEEL (G5ECB2)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			78 sequences
			


			
4FTAS_STRCT (B6VP39), APOH_BOVIN  (P17690), ARGD_RALN1  (Q8XWN8), 

			
CCD14_HUMAN (Q49A88), CD59_PAPSP  (Q28785), CEPL_CERFI  (P81702), 
DIG1_CAEEL  (Q09165), DYH3_MOUSE  (Q8BW94), EF121_ARATH (Q9FGC9), 
EPHA3_DANRE (O13146), F215A_HUMAN (Q9Y5M1), FGFH_NPVOP  (O10284), 
GLGB_MAIZE  (Q08047), GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), 
GPR33_PANTR (Q49SQ3), ILVC_STAHJ  (Q4L7T9), IOLC_PHOPR  (Q6LK43), 
LRP2_PIG(C0HL13), LSS_MOUSE   (Q8BLN5), LSS_RAT (P48450), 
LTP_HCMVA   (P16785), LTP_HCMVM   (Q6SW84), LTP_HCMVT   (D5LX59), 
LYST_BOVIN  (Q9TTK4), LYST_HUMAN  (Q99698), LYSX_MYCA1  (A0QHC4), 
LYSX_MYCPA  (Q740J9), MLRP1_ACRMI (B3EWZ5), MLRP2_ACRMI (B3EWZ6), 
MUC2_MOUSE  (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), 
NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT   (Q62685), NTPPB_PHOPR (Q6LSX6), 
NTR2_MOUSE  (P70310), NTR2_RAT(Q63384), PFL5_SCHPO  (Q9URU4), 
QUEF_NOVAD  (Q2G586), RGSL1_ARATH (F4ITM1), RL36_THET2  (Q72I28), 
RL36_THET8  (Q5SHR2), RL36_THETH  (P80256), RL36_TROW8  (Q83I57), 
RL36_TROWT  (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), 
SORL_CHICK  (Q98930), SORL_HUMAN  (Q92673), SORL_MOUSE  (O88307), 
SORL_RABIT  (Q95209), SORL_RAT(P0DSP1), STA5A_MOUSE (P42230), 
SYI_PHOPR   (Q6LUL1), THIC_RHOPB  (Q216H0), TOP3_STAA3  (Q2FEN5), 
TOP3_STAA8  (Q2FW03), TOP3_STAAB  (P0C2W6), TOP3_STAAC  (Q5HDV4), 
TOP3_STAAM  (Q99S17), TOP3_STAAN  (Q7A455), TOP3_STAAR  (Q6GEH9), 
TOP3_STAAS  (Q6G767), TOP3_STAAW  (Q7A075), TOP3_STAEQ  (Q5HLZ4), 
TOP3_STAES  (Q8CRF7), TOP3_STAHJ  (Q4L8B8), TOP3_STAS1  (Q49ZH2), 
TRRAP_HUMAN (Q9Y4A5), TRRAP_MOUSE (Q80YV3), U507_LODEL  (A5DUP0), 
UBR3_DANRE  (F1QJX5), VPS54_CAEBR (Q61JT8), VPS54_CAEEL (Q22639), 
XKR8_MOUSE  (Q8C0T0), Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			230 PDB
			


			1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 
			
				1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 
				1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 
				1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 
				1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 
				1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 
				1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 
				1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 
				1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 
				2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 
				2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HX9; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 
				2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 
				2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 
				3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 
				3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 
				4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 
				4KOB; 4P5R; 4P5S; 4PCY; 4R0O; 4RH4; 4YL4; 5AZU; 5I26; 5I28; 5PCY; 5SYD; 
				5WV4; 5X31; 5XMO; 5Y23; 5YSG; 5YW3; 5Z0X; 5ZTD; 6AKN; 6GYI; 6IAV; 6IFP; 
				6L1V; 6PCY; 6YEZ; 6ZOO; 7PCY; 7TNC; 7U2F; 7YGI; 7ZQE; 8HM9; 8K9N; 8K9P; 
				8PAZ; 9PCY
			
			

			» more