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PROSITE entry PS00196


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PURL: https://purl.expasy.org/prosite/signature/PS00196

Direct ScanProsite submission
General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info] 
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 170 in 169 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 1
Number of false positive hits 79 in 78 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 53.25 %
Recall (true positives / (true positives + false negatives)) 87.38 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 90 sequences 

AMCY_METEA  (P04172), AMCY_PARDE  (P22364), AMCY_PARVE  (P22365), 

AURA_CHLAA  (Q8RMH6), AURB_CHLAA  (P27197), AZUP_ACHCY  (P19567), 
AZUP_ALCFA  (P04377), AZUP_METEA  (P04171), AZUP_PARDE  (P80649), 
AZUP_PARPN  (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ  (P12334), 
AZUR2_ALCXX (P56275), AZUR2_METJ  (P12335), AZUR_ACHDE  (P00280), 
AZUR_ALCFA  (P00281), AZUR_ALCSP  (P00279), AZUR_BORBR  (P0A321), 
AZUR_BORPA  (P0A322), AZUR_BORPE  (P0A320), AZUR_PSEAE  (P00282), 
AZUR_PSECL  (P00286), AZUR_PSEDE  (P00283), AZUR_PSEFA  (P80546), 
AZUR_PSEFB  (P00284), AZUR_PSEFC  (P00285), AZUR_PSEPU  (P34097), 
BABL_CUCSA  (P00303), BCB1_ARATH  (Q07488), BCP_PEA (Q41001), 
CPC_CUCSA   (P29602), H81_NEIGO   (P07211), H8_NEIMA(P57025), 
H8_NEIMB(P57026), H8_NEIMF(P07212), HCY_NATPH   (P39442), 
MAVI_CUCPE  (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), 
PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), 
PLAS2_TOBAC (P35477), PLAS_ANAVA  (P0C178), PLAS_CAPBU  (P00294), 
PLAS_CHLRE  (P18068), PLAS_CUCPE  (P00292), PLAS_CUCSA  (P00293), 
PLAS_DAUCA  (P20422), PLAS_DRYCA  (Q7SIB8), PLAS_GINBI  (P84338), 
PLAS_GLOC7  (B7KAE8), PLAS_HORVU  (P08248), PLAS_LACSA  (P00290), 
PLAS_LEPLM  (Q51883), PLAS_MERPE  (P00295), PLAS_NOSP7  (B2IVD7), 
PLAS_NOSS1  (P46444), PLAS_NOSSO  (O52830), PLAS_ORYSI  (A2Y886), 
PLAS_ORYSJ  (Q0DFC9), PLAS_PEA(P16002), PLAS_PETCR  (P17341), 
PLAS_PHAVU  (P00287), PLAS_PHYPA  (Q9SXW9), PLAS_PROHO  (P50057), 
PLAS_RUMOB  (P00298), PLAS_SAMNI  (P00291), PLAS_SCEFU  (P00300), 
PLAS_SILLB  (P07030), PLAS_SOLCR  (P00297), PLAS_SOLLC  (P17340), 
PLAS_SOLTU  (P00296), PLAS_SPIOL  (P00289), PLAS_SYNE7  (P55020), 
PLAS_SYNJB  (Q2JHE1), PLAS_SYNP6  (Q5N4W8), PLAS_SYNY3  (P21697), 
PLAS_TETOB  (P26956), PLAS_TRIV2  (Q3M9H8), PLAS_ULVAR  (P13133), 
PLAS_ULVPE  (P56274), PLAS_ULVPR  (P07465), PLAS_VICFA  (P00288), 
RUS1_ACIFR  (P23742), RUS2_ACIFI  (P0C918), RUS_ACIF2   (B7JAQ0), 
STEL_TOXVR  (P00302), UCC1_ARATH  (O82081), UMEC_ARMRU  (P42849)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

AZUP_RHILV  (Q52825), AZUR_METFK  (Q50400), BABL_ARATH  (Q8LG89), 

BABL_LILLO  (P60496), BCB2_ARATH  (O80517), BCB3_ARATH  (Q96316), 
BCP1A_MEDTR (G7L0H3), BCP1B_MEDTR (A0A072U307), BCP_PETHY   (A0A0M4FTF3), 
CUPR1_ARTBC (P0DN32), MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), 
PLAS_FRIAG  (O22646)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

PLAS_MICAE  (P10625), PLAS_THAOC  (P84800)


				
	

	

		UniProtKB/Swiss-Prot
'Unknown' sequences		
		
			1 sequence
			


			
GABR2_CAEEL (G5ECB2)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			78 sequences
			


			
4FTAS_STRCT (B6VP39), APOH_BOVIN  (P17690), ARGD_RALN1  (Q8XWN8), 

			
CCD14_HUMAN (Q49A88), CD59_PAPSP  (Q28785), CEPL_CERFI  (P81702), 
DIG1_CAEEL  (Q09165), DYH3_MOUSE  (Q8BW94), EF121_ARATH (Q9FGC9), 
EPHA3_DANRE (O13146), F215A_HUMAN (Q9Y5M1), FGFH_NPVOP  (O10284), 
GLGB_MAIZE  (Q08047), GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), 
GPR33_PANTR (Q49SQ3), ILVC_STAHJ  (Q4L7T9), IOLC_PHOPR  (Q6LK43), 
LRP2_PIG(C0HL13), LSS_MOUSE   (Q8BLN5), LSS_RAT (P48450), 
LTP_HCMVA   (P16785), LTP_HCMVM   (Q6SW84), LTP_HCMVT   (D5LX59), 
LYST_BOVIN  (Q9TTK4), LYST_HUMAN  (Q99698), LYSX_MYCA1  (A0QHC4), 
LYSX_MYCPA  (Q740J9), MLRP1_ACRMI (B3EWZ5), MLRP2_ACRMI (B3EWZ6), 
MUC2_MOUSE  (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), 
NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT   (Q62685), NTPPB_PHOPR (Q6LSX6), 
NTR2_MOUSE  (P70310), NTR2_RAT(Q63384), PFL5_SCHPO  (Q9URU4), 
QUEF_NOVAD  (Q2G586), RGSL1_ARATH (F4ITM1), RL36_THET2  (Q72I28), 
RL36_THET8  (Q5SHR2), RL36_THETH  (P80256), RL36_TROW8  (Q83I57), 
RL36_TROWT  (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), 
SORL_CHICK  (Q98930), SORL_HUMAN  (Q92673), SORL_MOUSE  (O88307), 
SORL_RABIT  (Q95209), SORL_RAT(P0DSP1), STA5A_MOUSE (P42230), 
SYI_PHOPR   (Q6LUL1), THIC_RHOPB  (Q216H0), TOP3_STAA3  (Q2FEN5), 
TOP3_STAA8  (Q2FW03), TOP3_STAAB  (P0C2W6), TOP3_STAAC  (Q5HDV4), 
TOP3_STAAM  (Q99S17), TOP3_STAAN  (Q7A455), TOP3_STAAR  (Q6GEH9), 
TOP3_STAAS  (Q6G767), TOP3_STAAW  (Q7A075), TOP3_STAEQ  (Q5HLZ4), 
TOP3_STAES  (Q8CRF7), TOP3_STAHJ  (Q4L8B8), TOP3_STAS1  (Q49ZH2), 
TRRAP_HUMAN (Q9Y4A5), TRRAP_MOUSE (Q80YV3), U507_LODEL  (A5DUP0), 
UBR3_DANRE  (F1QJX5), VPS54_CAEBR (Q61JT8), VPS54_CAEEL (Q22639), 
XKR8_MOUSE  (Q8C0T0), Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			230 PDB
			


			pdb_00001a3z; pdb_00001a4a; pdb_00001a4b; pdb_00001a4c; pdb_00001a8z; pdb_00001aac; pdb_00001aaj; pdb_00001aan; pdb_00001adw; pdb_00001ag6; pdb_00001aiz; pdb_00001azb; 
			
				pdb_00001azc; pdb_00001azn; pdb_00001azr; pdb_00001azu; pdb_00001b3i; pdb_00001baw; pdb_00001bex; pdb_00001bqk; pdb_00001bqr; pdb_00001bxa; pdb_00001bxu; pdb_00001bxv; 
				pdb_00001byo; pdb_00001byp; pdb_00001cuo; pdb_00001cur; pdb_00001dyz; pdb_00001dz0; pdb_00001e30; pdb_00001e5y; pdb_00001e5z; pdb_00001e65; pdb_00001e67; pdb_00001ezl; 
				pdb_00001fa4; pdb_00001gr7; pdb_00001gy1; pdb_00001i53; pdb_00001id2; pdb_00001ils; pdb_00001iuz; pdb_00001j5c; pdb_00001j5d; pdb_00001jer; pdb_00001joi; pdb_00001jvl; 
				pdb_00001jvo; pdb_00001jxd; pdb_00001jxf; pdb_00001jxg; pdb_00001jze; pdb_00001jzf; pdb_00001jzg; pdb_00001jzh; pdb_00001jzi; pdb_00001jzj; pdb_00001kdi; pdb_00001kdj; 
				pdb_00001m9w; pdb_00001mda; pdb_00001mg2; pdb_00001mg3; pdb_00001nin; pdb_00001nwo; pdb_00001nwp; pdb_00001nzr; pdb_00001oow; pdb_00001ov8; pdb_00001paz; pdb_00001pcs; 
				pdb_00001pla; pdb_00001plb; pdb_00001plc; pdb_00001pmy; pdb_00001pnc; pdb_00001pnd; pdb_00001py0; pdb_00001pza; pdb_00001pzb; pdb_00001pzc; pdb_00001qhq; pdb_00001rcy; 
				pdb_00001rkr; pdb_00001t5k; pdb_00001tef; pdb_00001teg; pdb_00001tkw; pdb_00001tu2; pdb_00001uat; pdb_00001uri; pdb_00001vlx; pdb_00001ws7; pdb_00001ws8; pdb_00001x9r; 
				pdb_00001x9u; pdb_00001xb3; pdb_00001xb6; pdb_00001xb8; pdb_00001ylb; pdb_00001zia; pdb_00001zib; pdb_00002aan; pdb_00002aza; pdb_00002azu; pdb_00002b3i; pdb_00002bz7; 
				pdb_00002bzc; pdb_00002cak; pdb_00002cbp; pdb_00002ccw; pdb_00002cj3; pdb_00002fnw; pdb_00002fta; pdb_00002gb2; pdb_00002gba; pdb_00002gc4; pdb_00002gc7; pdb_00002ghz; 
				pdb_00002gi0; pdb_00002gim; pdb_00002h3x; pdb_00002h47; pdb_00002hx7; pdb_00002hx8; pdb_00002hx9; pdb_00002hxa; pdb_00002i7o; pdb_00002i7s; pdb_00002iaa; pdb_00002idf; 
				pdb_00002idt; pdb_00002idu; pdb_00002j55; pdb_00002j56; pdb_00002j57; pdb_00002jkw; pdb_00002jxm; pdb_00002mta; pdb_00002oj1; pdb_00002ov0; pdb_00002p80; pdb_00002pcf; 
				pdb_00002pcy; pdb_00002plt; pdb_00002q5b; pdb_00002qdv; pdb_00002qdw; pdb_00002rac; pdb_00002ux6; pdb_00002ux7; pdb_00002uxf; pdb_00002uxg; pdb_00002w88; pdb_00002w8c; 
				pdb_00003azu; pdb_00003bqv; pdb_00003c75; pdb_00003cvb; pdb_00003cvc; pdb_00003cvd; pdb_00003erx; pdb_00003ibo; pdb_00003in0; pdb_00003jtb; pdb_00003l45; pdb_00003nyk; 
				pdb_00003paz; pdb_00003pcy; pdb_00003ply; pdb_00003uge; pdb_00004azu; pdb_00004bwt; pdb_00004bwu; pdb_00004bww; pdb_00004bxv; pdb_00004dp0; pdb_00004dp1; pdb_00004dp2; 
				pdb_00004dp4; pdb_00004dp5; pdb_00004dp6; pdb_00004dp7; pdb_00004dp8; pdb_00004dp9; pdb_00004dpa; pdb_00004dpb; pdb_00004dpc; pdb_00004hz1; pdb_00004jkn; pdb_00004ko7; 
				pdb_00004kob; pdb_00004p5r; pdb_00004p5s; pdb_00004pcy; pdb_00004r0o; pdb_00004rh4; pdb_00004yl4; pdb_00005azu; pdb_00005i26; pdb_00005i28; pdb_00005pcy; pdb_00005syd; 
				pdb_00005x31; pdb_00005xmo; pdb_00005y23; pdb_00005ysg; pdb_00005yw3; pdb_00005z0x; pdb_00005ztd; pdb_00006akn; pdb_00006gyi; pdb_00006iav; pdb_00006ifp; pdb_00006l1v; 
				pdb_00006pcy; pdb_00006yez; pdb_00006zoo; pdb_00007pcy; pdb_00007tnc; pdb_00007u2f; pdb_00007ygi; pdb_00007zqe; pdb_00008hm9; pdb_00008k9n; pdb_00008k9p; pdb_00008paz; 
				pdb_00008wqz; pdb_00009pcy
			
			

			» more