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PROSITE entry PS00196


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General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info] 
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 170 in 169 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 1
Number of false positive hits 79 in 78 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 53.25 %
Recall (true positives / (true positives + false negatives)) 87.38 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 90 sequences 

AMCY_METEA  (P04172), AMCY_PARDE  (P22364), AMCY_PARVE  (P22365), 

AURA_CHLAA  (Q8RMH6), AURB_CHLAA  (P27197), AZUP_ACHCY  (P19567), 
AZUP_ALCFA  (P04377), AZUP_METEA  (P04171), AZUP_PARDE  (P80649), 
AZUP_PARPN  (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ  (P12334), 
AZUR2_ALCXX (P56275), AZUR2_METJ  (P12335), AZUR_ACHDE  (P00280), 
AZUR_ALCFA  (P00281), AZUR_ALCSP  (P00279), AZUR_BORBR  (P0A321), 
AZUR_BORPA  (P0A322), AZUR_BORPE  (P0A320), AZUR_PSEAE  (P00282), 
AZUR_PSECL  (P00286), AZUR_PSEDE  (P00283), AZUR_PSEFA  (P80546), 
AZUR_PSEFB  (P00284), AZUR_PSEFC  (P00285), AZUR_PSEPU  (P34097), 
BABL_CUCSA  (P00303), BCB1_ARATH  (Q07488), BCP_PEA (Q41001), 
CPC_CUCSA   (P29602), H81_NEIGO   (P07211), H8_NEIMA(P57025), 
H8_NEIMB(P57026), H8_NEIMF(P07212), HCY_NATPH   (P39442), 
MAVI_CUCPE  (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), 
PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), 
PLAS2_TOBAC (P35477), PLAS_ANAVA  (P0C178), PLAS_CAPBU  (P00294), 
PLAS_CHLRE  (P18068), PLAS_CUCPE  (P00292), PLAS_CUCSA  (P00293), 
PLAS_DAUCA  (P20422), PLAS_DRYCA  (Q7SIB8), PLAS_GINBI  (P84338), 
PLAS_GLOC7  (B7KAE8), PLAS_HORVU  (P08248), PLAS_LACSA  (P00290), 
PLAS_MERPE  (P00295), PLAS_NOSP7  (B2IVD7), PLAS_NOSS1  (P46444), 
PLAS_NOSSO  (O52830), PLAS_ORYSI  (A2Y886), PLAS_ORYSJ  (Q0DFC9), 
PLAS_PEA(P16002), PLAS_PETCR  (P17341), PLAS_PHAVU  (P00287), 
PLAS_PHOLA  (Q51883), PLAS_PHYPA  (Q9SXW9), PLAS_PROHO  (P50057), 
PLAS_RUMOB  (P00298), PLAS_SAMNI  (P00291), PLAS_SCEFU  (P00300), 
PLAS_SILLB  (P07030), PLAS_SOLCR  (P00297), PLAS_SOLLC  (P17340), 
PLAS_SOLTU  (P00296), PLAS_SPIOL  (P00289), PLAS_SYNE7  (P55020), 
PLAS_SYNJB  (Q2JHE1), PLAS_SYNP6  (Q5N4W8), PLAS_SYNY3  (P21697), 
PLAS_TETOB  (P26956), PLAS_TRIV2  (Q3M9H8), PLAS_ULVAR  (P13133), 
PLAS_ULVPE  (P56274), PLAS_ULVPR  (P07465), PLAS_VICFA  (P00288), 
RUS1_ACIFR  (P23742), RUS2_ACIFI  (P0C918), RUS_ACIF2   (B7JAQ0), 
STEL_TOXVR  (P00302), UCC1_ARATH  (O82081), UMEC_ARMRU  (P42849)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

AZUP_RHILV  (Q52825), AZUR_METFK  (Q50400), BABL_ARATH  (Q8LG89), 

BABL_LILLO  (P60496), BCB2_ARATH  (O80517), BCB3_ARATH  (Q96316), 
BCP1A_MEDTR (G7L0H3), BCP1B_MEDTR (A0A072U307), BCP_PETHY   (A0A0M4FTF3), 
CUPR1_ARTBC (P0DN32), MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), 
PLAS_FRIAG  (O22646)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

PLAS_MICAE  (P10625), PLAS_THAOC  (P84800)


				
	

	

		UniProtKB/Swiss-Prot
'Unknown' sequences		
		
			1 sequence
			


			
GABR2_CAEEL (G5ECB2)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			78 sequences
			


			
4FTAS_STRCT (B6VP39), APOH_BOVIN  (P17690), ARGD_RALN1  (Q8XWN8), 

			
CCD14_HUMAN (Q49A88), CD59_PAPSP  (Q28785), CEPL_CERFI  (P81702), 
DIG1_CAEEL  (Q09165), DYH3_MOUSE  (Q8BW94), EF121_ARATH (Q9FGC9), 
EPHA3_DANRE (O13146), F215A_HUMAN (Q9Y5M1), FGFH_NPVOP  (O10284), 
GLGB_MAIZE  (Q08047), GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), 
GPR33_PANTR (Q49SQ3), ILVC_STAHJ  (Q4L7T9), IOLC_PHOPR  (Q6LK43), 
LRP2_PIG(C0HL13), LSS_MOUSE   (Q8BLN5), LSS_RAT (P48450), 
LTP_HCMVA   (P16785), LTP_HCMVM   (Q6SW84), LTP_HCMVT   (D5LX59), 
LYST_BOVIN  (Q9TTK4), LYST_HUMAN  (Q99698), LYSX_MYCA1  (A0QHC4), 
LYSX_MYCPA  (Q740J9), MLRP1_ACRMI (B3EWZ5), MLRP2_ACRMI (B3EWZ6), 
MUC2_MOUSE  (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), 
NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT   (Q62685), NTPPB_PHOPR (Q6LSX6), 
NTR2_MOUSE  (P70310), NTR2_RAT(Q63384), PFL5_SCHPO  (Q9URU4), 
QUEF_NOVAD  (Q2G586), RGSL1_ARATH (F4ITM1), RL36_THET2  (Q72I28), 
RL36_THET8  (Q5SHR2), RL36_THETH  (P80256), RL36_TROW8  (Q83I57), 
RL36_TROWT  (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), 
SORL_CHICK  (Q98930), SORL_HUMAN  (Q92673), SORL_MOUSE  (O88307), 
SORL_RABIT  (Q95209), SORL_RAT(P0DSP1), STA5A_MOUSE (P42230), 
SYI_PHOPR   (Q6LUL1), THIC_RHOPB  (Q216H0), TOP3_STAA3  (Q2FEN5), 
TOP3_STAA8  (Q2FW03), TOP3_STAAB  (P0C2W6), TOP3_STAAC  (Q5HDV4), 
TOP3_STAAM  (Q99S17), TOP3_STAAN  (Q7A455), TOP3_STAAR  (Q6GEH9), 
TOP3_STAAS  (Q6G767), TOP3_STAAW  (Q7A075), TOP3_STAEQ  (Q5HLZ4), 
TOP3_STAES  (Q8CRF7), TOP3_STAHJ  (Q4L8B8), TOP3_STAS1  (Q49ZH2), 
TRRAP_HUMAN (Q9Y4A5), TRRAP_MOUSE (Q80YV3), U507_LODEL  (A5DUP0), 
UBR3_DANRE  (F1QJX5), VPS54_CAEBR (Q61JT8), VPS54_CAEEL (Q22639), 
XKR8_MOUSE  (Q8C0T0), Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			230 PDB
			


			1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 
			
				1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 
				1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 
				1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 
				1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 
				1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 
				1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 
				1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 
				1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 
				2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 
				2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HX9; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 
				2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 
				2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 
				3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 
				3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 
				4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 
				4KOB; 4P5R; 4P5S; 4PCY; 4R0O; 4RH4; 4YL4; 5AZU; 5I26; 5I28; 5PCY; 5SYD; 
				5WV4; 5X31; 5XMO; 5Y23; 5YSG; 5YW3; 5Z0X; 5ZTD; 6AKN; 6GYI; 6IAV; 6IFP; 
				6L1V; 6PCY; 6YEZ; 6ZOO; 7PCY; 7TNC; 7U2F; 7YGI; 7ZQE; 8HM9; 8K9N; 8K9P; 
				8PAZ; 9PCY
			
			

			» more