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Entry: PS00196

General information about the entry

Entry name [info] COPPER_BLUE
Accession [info] PS00196
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00174

Name and characterization of the entry

Description [info] Type-1 copper (blue) proteins signature.
Pattern [info] 
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 166 in 165 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits 1
Number of false positive hits 75 in 74 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 54.55 %
Recall (true positives / (true positives + false negatives)) 87.38 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Site [info] copper at position 7
Site [info] copper at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 90 sequences 

AMCY_METEA  (P04172    ), AMCY_PARDE  (P22364    ), AMCY_PARVE  (P22365    ), 

AURA_CHLAA  (Q8RMH6    ), AURB_CHLAA  (P27197    ), AZUP_ACHCY  (P19567    ), 
AZUP_ALCFA  (P04377    ), AZUP_METEA  (P04171    ), AZUP_PARDE  (P80649    ), 
AZUP_PARPN  (P80401    ), AZUR1_ALCXX (P56547    ), AZUR1_METJ  (P12334    ), 
AZUR2_ALCXX (P56275    ), AZUR2_METJ  (P12335    ), AZUR_ACHDE  (P00280    ), 
AZUR_ALCFA  (P00281    ), AZUR_ALCSP  (P00279    ), AZUR_BORBR  (P0A321    ), 
AZUR_BORPA  (P0A322    ), AZUR_BORPE  (P0A320    ), AZUR_PSEAE  (P00282    ), 
AZUR_PSECL  (P00286    ), AZUR_PSEDE  (P00283    ), AZUR_PSEFA  (P80546    ), 
AZUR_PSEFB  (P00284    ), AZUR_PSEFC  (P00285    ), AZUR_PSEPU  (P34097    ), 
BABL_CUCSA  (P00303    ), BCB1_ARATH  (Q07488    ), BCP_PEA     (Q41001    ), 
CPC_CUCSA   (P29602    ), H81_NEIGO   (P07211    ), H8_NEIMA    (P57025    ), 
H8_NEIMB    (P57026    ), H8_NEIMF    (P07212    ), HCY_NATPH   (P39442    ), 
MAVI_CUCPE  (P80728    ), PLAS1_ARATH (P11490    ), PLAS1_POPNI (P00299    ), 
PLAS1_TOBAC (P35476    ), PLAS2_ARATH (P42699    ), PLAS2_POPNI (P11970    ), 
PLAS2_TOBAC (P35477    ), PLAS_ANAVA  (P0C178    ), PLAS_CAPBU  (P00294    ), 
PLAS_CHLRE  (P18068    ), PLAS_CUCPE  (P00292    ), PLAS_CUCSA  (P00293    ), 
PLAS_DAUCA  (P20422    ), PLAS_DRYCA  (Q7SIB8    ), PLAS_GINBI  (P84338    ), 
PLAS_GLOC7  (B7KAE8    ), PLAS_HORVU  (P08248    ), PLAS_LACSA  (P00290    ), 
PLAS_MERPE  (P00295    ), PLAS_NOSP7  (B2IVD7    ), PLAS_NOSS1  (P46444    ), 
PLAS_NOSSO  (O52830    ), PLAS_ORYSI  (A2Y886    ), PLAS_ORYSJ  (Q0DFC9    ), 
PLAS_PEA    (P16002    ), PLAS_PETCR  (P17341    ), PLAS_PHAVU  (P00287    ), 
PLAS_PHOLA  (Q51883    ), PLAS_PHYPA  (Q9SXW9    ), PLAS_PROHO  (P50057    ), 
PLAS_RUMOB  (P00298    ), PLAS_SAMNI  (P00291    ), PLAS_SCEFU  (P00300    ), 
PLAS_SILLB  (P07030    ), PLAS_SOLCR  (P00297    ), PLAS_SOLLC  (P17340    ), 
PLAS_SOLTU  (P00296    ), PLAS_SPIOL  (P00289    ), PLAS_SYNE7  (P55020    ), 
PLAS_SYNJB  (Q2JHE1    ), PLAS_SYNP6  (Q5N4W8    ), PLAS_SYNY3  (P21697    ), 
PLAS_TETOB  (P26956    ), PLAS_TRIV2  (Q3M9H8    ), PLAS_ULVAR  (P13133    ), 
PLAS_ULVPE  (P56274    ), PLAS_ULVPR  (P07465    ), PLAS_VICFA  (P00288    ), 
RUS1_ACIFR  (P23742    ), RUS2_ACIFR  (P0C918    ), RUS_ACIF2   (B7JAQ0    ), 
STEL_TOXVR  (P00302    ), UCC1_ARATH  (O82081    ), UMEC_ARMRU  (P42849    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

AZUP_RHILV  (Q52825    ), AZUR_METFK  (Q50400    ), BABL_ARATH  (Q8LG89    ), 

BABL_LILLO  (P60496    ), BCB2_ARATH  (O80517    ), BCB3_ARATH  (Q96316    ), 
BCP1A_MEDTR (G7L0H3    ), BCP1B_MEDTR (A0A072U307), BCP_PETHY   (A0A0M4FTF3), 
CUPR1_ARTBC (P0DN32    ), MPAA3_AMBEL (P00304    ), NO552_SOYBN (Q02917    ), 
PLAS_FRIAG  (O22646    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

PLAS_MICAE  (P10625    ), PLAS_THAOC  (P84800    )


				
	

	

		UniProtKB/Swiss-Prot
'Unknown' sequences		
		
			1 sequence
			


			
GABR2_CAEEL (G5ECB2    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			74 sequences
			


			
4FTAS_STRCT (B6VP39    ), APOH_BOVIN  (P17690    ), ARGD_RALSO  (Q8XWN8    ), 

			
CCD14_HUMAN (Q49A88    ), CD59_PAPSP  (Q28785    ), CEPL_CERFI  (P81702    ), 
DIG1_CAEEL  (Q09165    ), DYH3_MOUSE  (Q8BW94    ), EF121_ARATH (Q9FGC9    ), 
EPHA3_DANRE (O13146    ), F215A_HUMAN (Q9Y5M1    ), FGFH_NPVOP  (O10284    ), 
GLGB_MAIZE  (Q08047    ), GPR33_HUMAN (Q49SQ1    ), GPR33_PANPA (Q49SQ2    ), 
GPR33_PANTR (Q49SQ3    ), ILVC_STAHJ  (Q4L7T9    ), IOLC_PHOPR  (Q6LK43    ), 
LRP2_PIG    (C0HL13    ), LSS_MOUSE   (Q8BLN5    ), LSS_RAT     (P48450    ), 
LTP_HCMVA   (P16785    ), LTP_HCMVM   (Q6SW84    ), LTP_HCMVT   (D5LX59    ), 
LYST_BOVIN  (Q9TTK4    ), LYST_HUMAN  (Q99698    ), LYSX_MYCA1  (A0QHC4    ), 
LYSX_MYCPA  (Q740J9    ), MUC2_MOUSE  (Q80Z19    ), NR1H3_BOVIN (Q5E9B6    ), 
NR1H3_HUMAN (Q13133    ), NR1H3_MOUSE (Q9Z0Y9    ), NR1H3_RAT   (Q62685    ), 
NTPPB_PHOPR (Q6LSX6    ), NTR2_MOUSE  (P70310    ), NTR2_RAT    (Q63384    ), 
PFL5_SCHPO  (Q9URU4    ), QUEF_NOVAD  (Q2G586    ), RL36_THET2  (Q72I28    ), 
RL36_THET8  (Q5SHR2    ), RL36_THETH  (P80256    ), RL36_TROW8  (Q83I57    ), 
RL36_TROWT  (Q83G08    ), S35B2_HUMAN (Q8TB61    ), S35B2_PONAB (Q5R9A1    ), 
SORL_CHICK  (Q98930    ), SORL_HUMAN  (Q92673    ), SORL_MOUSE  (O88307    ), 
SORL_RABIT  (Q95209    ), SORL_RAT    (P0DSP1    ), STA5A_MOUSE (P42230    ), 
SYI_PHOPR   (Q6LUL1    ), THIC_RHOPB  (Q216H0    ), TOP3_STAA3  (Q2FEN5    ), 
TOP3_STAA8  (Q2FW03    ), TOP3_STAAB  (P0C2W6    ), TOP3_STAAC  (Q5HDV4    ), 
TOP3_STAAM  (Q99S17    ), TOP3_STAAN  (Q7A455    ), TOP3_STAAR  (Q6GEH9    ), 
TOP3_STAAS  (Q6G767    ), TOP3_STAAW  (Q7A075    ), TOP3_STAEQ  (Q5HLZ4    ), 
TOP3_STAES  (Q8CRF7    ), TOP3_STAHJ  (Q4L8B8    ), TOP3_STAS1  (Q49ZH2    ), 
TRRAP_HUMAN (Q9Y4A5    ), TRRAP_MOUSE (Q80YV3    ), U507_LODEL  (A5DUP0    ), 
VPS54_CAEBR (Q61JT8    ), VPS54_CAEEL (Q22639    ), XKR8_MOUSE  (Q8C0T0    ), 
Y2934_KINRD (A6WC59    ), Y6211_BACAN (Q9X397    )


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			221 PDB
			


			1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 
			
				1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 
				1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 
				1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 
				1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 
				1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 
				1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 
				1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 
				1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 
				2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 
				2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HX9; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 
				2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 
				2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 
				3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 
				3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 
				4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 
				4KOB; 4P5R; 4P5S; 4PCY; 4R0O; 4RH4; 4YL4; 5AZU; 5I26; 5I28; 5PCY; 5SYD; 
				5WV4; 5X31; 5XMO; 5Y23; 5YSG; 5YW3; 5Z0X; 5ZTD; 6AKN; 6GYI; 6IAV; 6IFP; 
				6L1V; 6PCY; 7PCY; 8PAZ; 9PCY
			
			

			» more

				
	





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