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| Entry: PS00197 |
General information about the entry
| Entry name [info] | 2FE2S_FER_1 |
| Accession [info] | PS00197 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-1991 DATA UPDATE; 17-JUN-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00175 |
Name and characterization of the entry
| Description [info] | 2Fe-2S ferredoxin-type iron-sulfur binding region signature. |
| Pattern [info] |
C-{C}-{C}-[GA]-{C}-C-[GAST]-{CPDEKRHFYW}-C.
|
Numerical results [info]
| Total number of hits | 349 in 344 different sequences |
| Number of true positive hits | 288 in 287 different sequences |
| Number of 'unknown' hits | 1 |
| Number of false positive hits | 60 in 56 different sequences |
| Number of false negative sequences | 121 |
| Number of 'partial' sequences | 12 |
| Precision (true positives / (true positives + false positives)) | 82.76 % |
| Recall (true positives / (true positives + false negatives)) | 70.42 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Site [info] | iron_sulfur at position 1 |
| Site [info] | iron_sulfur at position 6 |
| Site [info] | iron_sulfur at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
287 sequences
ALDO1_ARATH (Q7G193 ), ALDO1_MAIZE (O23887 ), ALDO1_ORYSJ (Q7XH05 ), ALDO2_ARATH (Q7G192 ), ALDO2_MAIZE (O23888 ), ALDO2_ORYSJ (Q852M1 ), ALDO3_ARATH (Q7G9P4 ), ALDO3_ORYSJ (Q852M2 ), ALDO4_ARATH (Q7G191 ), ALDO4_ORYSJ (Q69R21 ), ANTDC_ACIAD (O85675 ), AOXA_BOVIN (P48034 ), AOXA_CAVPO (H9TB17 ), AOXA_HUMAN (Q06278 ), AOXA_MACFA (Q5FB27 ), AOXA_MOUSE (O54754 ), AOXA_RABIT (P80456 ), AOXA_RAT (Q9Z0U5 ), AOXB_CAVPO (H9TB19 ), AOXB_MACFA (C4NYZ3 ), AOXB_MOUSE (Q5SGK3 ), AOXB_RAT (Q5QE78 ), AOXC_MOUSE (G3X982 ), AOXC_RAT (Q5QE80 ), AOXD_CAVPO (H9TB18 ), AOXD_MOUSE (Q3TYQ9 ), AOXD_RAT (Q5QE79 ), ASCD_YERPE (P68641 ), ASCD_YERPS (Q66DP5 ), BENC_ACIAD (P07771 ), CARAD_PSERE (Q8GI14 ), CBAB_COMTE (Q44257 ), CBDC_BURCE (Q51603 ), CDHC_PSEU3 (D7REY5 ), CNTB_ACIB2 (D0C9N8 ), CNTB_ACICP (F0KFI7 ), CNTB_ECOLI (P76254 ), DMPP_ACICP (Q7WTJ2 ), DMPP_PSEUF (P19734 ), DNTAA_BURSR (Q45692 ), FER1_APHFL (P00244 ), FER1_AQUAE (O67065 ), FER1_ARATH (O04090 ), FER1_CYACA (Q9TLW0 ), FER1_CYAPA (P17007 ), FER1_DESMC (P00252 ), FER1_DUNSA (P00239 ), FER1_EQUAR (P00235 ), FER1_EQUTE (P00234 ), FER1_HALMA (P00217 ), FER1_HYONI (P84873 ), FER1_LEPBY (Q51577 ), FER1_MAIZE (P27787 ), FER1_MESCR (O04683 ), FER1_NOSS1 (P0A3C7 ), FER1_NOSSO (P0A3C8 ), FER1_ORYSI (A2YQD9 ), FER1_ORYSJ (Q0J8M2 ), FER1_PEA (P09911 ), FER1_PHYAM (P00229 ), FER1_PHYAN (P00230 ), FER1_RAPSA (P14936 ), FER1_SOLLC (Q43517 ), FER1_SPIOL (P00221 ), FER1_SYNE7 (P0A3D2 ), FER1_SYNP2 (P31965 ), FER1_SYNP6 (P0A3D3 ), FER1_TRIV2 (P00254 ), FER2_APHSA (P00251 ), FER2_ARATH (P16972 ), FER2_CYACA (P15789 ), FER2_DESMC (P00249 ), FER2_DUNSA (P00240 ), FER2_EQUAR (P00237 ), FER2_EQUTE (P00236 ), FER2_HALMA (Q5UZ63 ), FER2_HYONI (P84874 ), FER2_LEPBY (P46035 ), FER2_MAIZE (O80429 ), FER2_PHYAM (P00231 ), FER2_PHYAN (P00232 ), FER2_RAPSA (P14937 ), FER2_SPIOL (P00224 ), FER2_SYNP6 (P08451 ), FER3_ARATH (Q9ZQG8 ), FER3_CYACA (P00241 ), FER3_MAIZE (P27788 ), FER3_RAPSA (P14938 ), FER4_ARATH (Q9FIA7 ), FER4_RHOCA (P0CY92 ), FER4_RHOCB (D5ARY7 ), FER5_MAIZE (P27789 ), FER5_RHOCA (P37097 ), FER6_MAIZE (P94044 ), FERA_ALOMA (P81372 ), FERB_ALOMA (P81373 ), FERH_MICDP (P28610 ), FERH_NOSS1 (P11053 ), FERH_TRIV2 (P46046 ), FERN_PSEPU (P23263 ), FERV_TRIV2 (P46047 ), FERX_PSEPU (P23103 ), FER_APHSA (P00250 ), FER_ARCLA (P00223 ), FER_ARTPT (P00246 ), FER_ATRBE (P84872 ), FER_BRANA (P00227 ), FER_BRUAR (P83520 ), FER_BRYMA (P07838 ), FER_BUMFI (P13106 ), FER_CAPAA (P83527 ), FER_CAPAN (Q9ZTS2 ), FER_CHLFR (P00247 ), FER_CHLRE (P07839 ), FER_COLES (P00222 ), FER_DATIN (P68163 ), FER_DATME (P68164 ), FER_DATQU (P68166 ), FER_DATST (P68165 ), FER_DESMC (P00253 ), FER_EUGVI (P22341 ), FER_GLEJA (P00233 ), FER_GUITH (O78510 ), FER_HALP7 (P15788 ), FER_HALSA (P00216 ), FER_HORVU (P83522 ), FER_LEULE (P00225 ), FER_LIMMA (P00245 ), FER_LYCCN (P83523 ), FER_MARPO (P09735 ), FER_MASLA (P00248 ), FER_MEDSA (P00220 ), FER_PALPL (P07484 ), FER_PANGI (P85121 ), FER_PERBI (P10770 ), FER_PHYAF (P83524 ), FER_PHYPA (O04166 ), FER_PLAF7 (Q8IED5 ), FER_PORPU (P51320 ), FER_PORUM (P00242 ), FER_PYRYE (Q1XDG7 ), FER_SAMNI (P00226 ), FER_SCEFU (P56408 ), FER_SCEQU (P00238 ), FER_SCOJA (P83525 ), FER_SILLB (P04669 ), FER_SOLAB (P83585 ), FER_SOLLS (P83584 ), FER_SOLLY (P83583 ), FER_SOLNI (P83582 ), FER_SYNEL (P0A3D0 ), FER_SYNLI (P00255 ), FER_SYNY3 (P27320 ), FER_SYNY4 (P00243 ), FER_THAWE (O98450 ), FER_THEEB (P0A3C9 ), FER_THEVL (P0A3D1 ), FER_TOBAC (P83526 ), FER_TRICV (P49522 ), FER_WHEAT (P00228 ), FESII_AZOVI (Q44501 ), FPOO_METMA (F1SVE1 ), FRDB_ECO57 (P0AC49 ), FRDB_ECOL6 (P0AC48 ), FRDB_ECOLI (P0AC47 ), FRDB_HAEIN (P44893 ), FRDB_HELPJ (Q9ZMP1 ), FRDB_HELPY (O06914 ), FRDB_PROVU (P20921 ), FRDB_SHIFL (P0AC50 ), FRDB_WOLSU (P17596 ), GAD3_CAEEL (Q960A1 ), GCOB_AMYS7 (P0DPQ8 ), HCRC_THAAR (O33818 ), IORA_BREDI (Q51697 ), KDHB_PAENI (O87682 ), KSHB_MYCS2 (A0R525 ), KSHB_MYCTO (P9WJ92 ), KSHB_MYCTU (P9WJ93 ), KSHB_RHORH (B6V6V6 ), MFRB_WOLSU (Q7M826 ), MIMB_MYCGD (E9RFT0 ), MIMB_MYCS2 (A0QTU9 ), MMOC_METCA (P22868 ), MOP_DESGI (Q46509 ), MSMD_METHY (Q9X406 ), NAGAA_RALSP (O52378 ), NDMD_PSEPU (H9N291 ), NDOR_PSEPU (Q52126 ), NDSFS_EUBBA (Q0QLF3 ), NFXL2_ARATH (Q9FFK8 ), NICA_PSEPK (Q88FX9 ), PAAE_ECOLI (P76081 ), PAOA_ECO57 (Q8X6I9 ), PAOA_ECOLI (P77165 ), PCPD_SPHCR (Q47914 ), PDR_BURCE (P33164 ), PHT2_PSEPU (Q05182 ), POBB_PSEOL (Q52186 ), PRMB_RHOJR (Q0SJK8 ), PYRK_ARCFU (O29722 ), PYRK_METAC (P58886 ), PYRK_METAR (Q0W8E0 ), PYRK_METBF (Q46CG8 ), PYRK_METBU (Q12WN0 ), PYRK_METJA (Q58841 ), PYRK_METKA (P58887 ), PYRK_METMA (Q8PW55 ), PYRK_METTH (O27280 ), PYRK_PYRAB (Q9UXV5 ), PYRK_PYRFU (P58888 ), PYRK_PYRHO (O57738 ), PYRK_THEKO (Q5JJ90 ), RFBI_SALTY (P26395 ), SDHB1_ARATH (Q8LBZ7 ), SDHB1_ORYSJ (Q9S827 ), SDHB2_ARATH (Q8LB02 ), SDHB2_ORYSJ (Q6H4G3 ), SDHB3_ARATH (Q9FJP9 ), SDHB_ASHGO (Q75CI4 ), SDHB_BOVIN (Q3T189 ), SDHB_CAEBR (A8WPF0 ), SDHB_CAEEL (Q09545 ), SDHB_CANGA (Q6FWS8 ), SDHB_CHICK (Q9YHT2 ), SDHB_CHOCR (P48932 ), SDHB_CYACA (P48933 ), SDHB_DANRE (A5PL98 ), SDHB_DICDI (Q55CC2 ), SDHB_DROME (P21914 ), SDHB_HUMAN (P21912 ), SDHB_MOUSE (Q9CQA3 ), SDHB_PARDE (Q59662 ), SDHB_PIG (Q007T0 ), SDHB_PORPU (P80477 ), SDHB_RAT (P21913 ), SDHB_RECAM (P80480 ), SDHB_RICBR (Q1RGP3 ), SDHB_RICCN (Q92JJ8 ), SDHB_RICFE (Q4UN71 ), SDHB_RICPR (Q9ZEA1 ), SDHB_RICTY (Q68XS0 ), SDHB_SCHPO (P21911 ), SDHB_UROFA (Q70KF8 ), SDHB_USTMA (P32420 ), SDHB_XENLA (Q3B8J8 ), SDHB_XENTR (B0BM36 ), SDHB_YEAST (P21801 ), SDHB_ZYMTR (O42772 ), TFRB_METTM (D9PUX5 ), TMOF_PSEME (Q03304 ), TPDR1_COMSP (Q3C1E0 ), TPDR2_COMSP (Q3C1D2 ), TSAB1_COMTE (P94680 ), TSAB2_COMTE (Q9AHG2 ), VANB_ACIAD (O24840 ), VANB_PSEPU (O54037 ), VANB_PSES9 (P12580 ), VANB_PSEUH (O05617 ), XAMOF_XANP2 (A7IPX7 ), XDH1_ARATH (Q8GUQ8 ), XDH2_ARATH (F4JLI5 ), XDHE_BACSU (O32143 ), XDH_BLAAD (R4ZGN4 ), XDH_BOVIN (P80457 ), XDH_CALVI (P08793 ), XDH_CHICK (P47990 ), XDH_DICDI (Q54FB7 ), XDH_DROME (P10351 ), XDH_DROPS (P22811 ), XDH_DROSU (P91711 ), XDH_EMENI (Q12553 ), XDH_FELCA (Q9MYW6 ), XDH_HUMAN (P47989 ), XDH_MOUSE (Q00519 ), XDH_ORYSJ (Q6AUV1 ), XDH_RAT (P22985 ), XYLA_PSEPU (P21394 ), XYLZ_PSEPU (P23101 ), Y092_METJA (Q57557 ), Y1067_METMP (Q6LYC4 ), Y1309_HAEIN (P45154 ), Y166_BUCBP (Q89AS6 ), Y177_BUCAI (P57274 ), YCBX_ECOLI (P75863 ), YFAE_ECOL6 (P0ABW4 ), YFAE_ECOLI (P0ABW3 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
121 sequences
CSMI_CHLTE (O68988 ), CSMJ_CHLTE (O68983 ), CUTC_SULAC (Q4J6M5 ), DCMS_HYDPS (P19915 ), DCMS_OLICO (P19921 ), DESET_MYCTO (P9WNE8 ), DESET_MYCTU (P9WNE9 ), FER_TRIVA (P21149 ), FRDB_MYCTO (P9WN88 ), FRDB_MYCTU (P9WN89 ), HCNA_PSEAE (G3XD67 ), HCNA_PSEPH (O85226 ), HCR_ECOLI (P75824 ), HNDD_DESFR (Q46508 ), HOXU_CUPNH (P22318 ), MMOC_METTR (Q53563 ), MVHD_METTH (Q50781 ), MVHD_METTM (P60238 ), NDUS1_ACACA (Q37373 ), NDUS1_ARATH (Q9FGI6 ), NDUS1_BOVIN (P15690 ), NDUS1_DICCI (Q2LCP5 ), NDUS1_DICDI (Q34312 ), NDUS1_DROME (Q94511 ), NDUS1_HUMAN (P28331 ), NDUS1_MESAU (P86203 ), NDUS1_MOUSE (Q91VD9 ), NDUS1_NEUCR (P24918 ), NDUS1_PONAB (P0CB67 ), NDUS1_PONPY (P0CB68 ), NDUS1_RECAM (O21241 ), NDUS1_SOLTU (Q43644 ), NQO3_PARDE (P29915 ), NQO3_THET8 (Q56223 ), NQRF_ACTP2 (A3MYM7 ), NQRF_ACTSZ (A6VLY1 ), NQRF_CHLCV (Q821Q3 ), NQRF_CHLFF (Q255Y6 ), NQRF_CHLMU (Q9PLI3 ), NQRF_CHLPN (Q9Z723 ), NQRF_CHLTA (Q3KKV3 ), NQRF_CHLTR (O84745 ), NQRF_HAEDU (Q7VNU4 ), NQRF_HAEI8 (Q4QP19 ), NQRF_HAEIE (A5UAX6 ), NQRF_HAEIG (A5UFX3 ), NQRF_HAEIN (O05012 ), NQRF_HAES1 (Q0I5Y1 ), NQRF_IDILO (Q5QYQ8 ), NQRF_KLEP7 (A6T526 ), NQRF_MANSM (Q65VU9 ), NQRF_MARMS (A6VW13 ), NQRF_METCA (Q605A0 ), NQRF_NEIG1 (Q5F6X5 ), NQRF_NEIM0 (A9M2A6 ), NQRF_NEIMA (Q9JVQ3 ), NQRF_NEIMB (Q9K0M8 ), NQRF_NEIMF (A1KSH3 ), NQRF_PASMU (Q9CLA6 ), NQRF_PHOPO (Q9LCJ1 ), NQRF_PSEA6 (Q15YQ1 ), NQRF_PSEA7 (A6V3A2 ), NQRF_PSEAB (Q02PF8 ), NQRF_PSEAE (Q9HZL1 ), NQRF_PSYA2 (Q4FPV2 ), NQRF_PSYCK (Q1Q7Z7 ), NQRF_SERP5 (A8GAC4 ), NQRF_SHEDO (Q12QK1 ), NQRF_VIBAL (Q56584 ), NQRF_VIBAN (Q75R59 ), NQRF_VIBC3 (A5F5Y4 ), NQRF_VIBCB (Q9RFV6 ), NQRF_VIBCH (Q9X4Q8 ), NQRF_VIBPA (Q9LCJ0 ), NQRF_VIBVU (Q8DBJ1 ), NQRF_VIBVY (Q7MID2 ), NQRF_YERE8 (A1JNZ2 ), NQRF_YERP3 (A7FLJ3 ), NQRF_YERPA (Q1C4D5 ), NQRF_YERPE (Q8ZBZ5 ), NQRF_YERPN (Q1CLD8 ), NQRF_YERPP (A4TPL2 ), NQRF_YERPS (Q66E01 ), NUOG2_RHIME (P56914 ), NUOG_BLOFL (Q7VRV7 ), NUOG_BUCAI (P57257 ), NUOG_BUCAP (Q8K9Y2 ), NUOG_BUCBP (Q89AU1 ), NUOG_ECO57 (Q8XCX2 ), NUOG_ECOL6 (Q8FFJ9 ), NUOG_ECOLI (P33602 ), NUOG_MYCBO (P59962 ), NUOG_MYCTO (P9WIV8 ), NUOG_MYCTU (P9WIV9 ), NUOG_PSEAE (Q9I0J6 ), NUOG_PSEFL (Q9KGW3 ), NUOG_PSEPK (Q88FH2 ), NUOG_PSESM (Q87ZQ4 ), NUOG_RICBR (Q1RKD2 ), NUOG_RICCN (Q92G92 ), NUOG_RICFE (Q4UK22 ), NUOG_RICPR (Q9ZCF6 ), NUOG_RICTY (Q68VV2 ), NUOG_SALTI (P0A1Y5 ), NUOG_SALTY (P0A1Y4 ), NUOG_SHEON (Q8EI34 ), NUOG_SHIFL (Q7UC56 ), NUOG_STRCO (Q9XAR0 ), NUOG_YERPE (Q8ZDL2 ), PHF1_CLOPA (P29166 ), PRMB_GORST (Q768T4 ), SDHB_ECOLI (P07014 ), SDHB_SALTY (Q8ZQU2 ), VHCD_ARCPA (P84624 ), VHCD_METVO (Q00405 ), VHUD_METJA (P81334 ), VHUD_METKA (Q8TXN5 ), VHUD_METMP (Q6LWL3 ), VHUD_METVO (Q00408 ), XDHC_ECO57 (Q8X6C4 ), XDHC_ECOLI (Q46801 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
12 sequences
FER2_PEA (Q7M258 ), FER_ANASL (P83156 ), FER_PORAE (P18820 ), FER_PORPP (P18821 ), HOXU_RHOOP (P22659 ), NQRF_ALTMA (Q9LCJ3 ), NQRF_COLMA (Q9K3E1 ), NQRF_COLPS (Q9LCJ2 ), NQRF_MORMI (Q9LCI9 ), NQRF_PSEHA (Q9LCJ4 ), NQRF_SHEHA (Q9LCI8 ), NQRF_SHEPU (Q9LCI7 )» more |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
RNFB_METAC (Q8TSX9 ) |
| UniProtKB/Swiss-Prot False positive sequences |
56 sequences
ANCHR_HUMAN (Q96K21 ), BRL1_SCHPO (Q1MTQ0 ), CADH1_OCIBA (Q2KNL5 ), DHB2_HUMAN (P37059 ), DR3_HHV6U (Q89660 ), EFEM_BACSU (P39596 ), ESP1_ARATH (Q5IBC5 ), FAP1H_SCHPO (O74853 ), FIZ1_HUMAN (Q96SL8 ), FIZ1_MOUSE (Q9WTJ4 ), GUC2A_CAVPO (P70664 ), GUC2A_DIDVI (P55936 ), GUC2A_HUMAN (Q02747 ), GUC2A_MOUSE (P33680 ), GUC2A_NOTAL (Q8R5G9 ), GUC2A_PIG (P79897 ), GUC2A_RAT (P28902 ), HEPC_PIG (Q8MJ80 ), KDM2A_HUMAN (Q9Y2K7 ), KDM2A_MOUSE (P59997 ), KRA51_HUMAN (Q6L8H4 ), KRA55_HUMAN (Q701N2 ), KRUC_SHEEP (P26372 ), NFX1_DICDI (Q54BK0 ), NFXL1_XENLA (A0JMY5 ), RL32_CHLPN (Q9Z6U7 ), RL32_CHLTA (Q3KKN1 ), RL32_CHLTR (O84816 ), RN186_BOVIN (Q3T0Y9 ), RN186_HUMAN (Q9NXI6 ), RNF14_HUMAN (Q9UBS8 ), RNF14_MOUSE (Q9JI90 ), RRP44_CAEEL (Q17632 ), SERC4_HUMAN (A6NH21 ), SERC5_DANRE (Q803X0 ), SERC5_HUMAN (Q86VE9 ), SERC5_MOUSE (Q8BHJ6 ), SERC5_RAT (Q63175 ), SERIC_MONBE (A9UY97 ), SERIC_NEMVE (A7S4N4 ), SIVA_HUMAN (O15304 ), SIVA_MOUSE (O54926 ), SIVA_RAT (P59692 ), SPIR2_HUMAN (Q8WWL2 ), SPIR2_MOUSE (Q8K1S6 ), STC_DROME (P40798 ), SYFA_CHLAB (Q5L5A8 ), SYFA_CHLCV (Q822B5 ), SYFA_CHLMU (Q9PL83 ), SYFA_CHLTA (Q3KKK3 ), SYFA_CHLTR (O84843 ), TNR9_HUMAN (Q07011 ), VE6_BPV1 (P06931 ), VE6_MNPVA (P30735 ), WDFY2_CAEBR (A8XXC7 ), WDFY2_CAEEL (Q18964 )» more |
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