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PROSITE entry PS00205


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General information about the entry

Entry name [info] TRANSFERRIN_LIKE_1
Accession [info] PS00205
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-JUN-1994 DATA UPDATE;
03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00182

Name and characterization of the entry

Description [info] Transferrin-like domain signature 1.
Pattern [info] 
Y-x(0,1)-[VAS]-V-[IVAC]-[IVA]-[IVA]-[RKH]-[RKS]-[GDENSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.


Total number of hits 70 in 42 different sequences
Number of true positive hits 62 in 34 different sequences
Number of 'unknown' hits 0
Number of false positive hits 8 in 8 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 88.57 %
Recall (true positives / (true positives + false negatives)) 96.88 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] iron at position 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 34 sequences 

ICA_MOUSE   (Q9DBD0    ), ICA_PIG     (Q29545    ), TRFE1_SALSA (P80426    ), 

TRFE2_SALSA (P80429    ), TRFEA_XENLA (P20233    ), TRFEB_XENLA (Q6PGT3    ), 
TRFE_ANAPL  (P56410    ), TRFE_BOVIN  (Q29443    ), TRFE_CHICK  (P02789    ), 
TRFE_GADMO  (Q92079    ), TRFE_HORSE  (P27425    ), TRFE_HUMAN  (P02787    ), 
TRFE_MOUSE  (Q921I1    ), TRFE_ONCKI  (P79815    ), TRFE_ORYLA  (P79819    ), 
TRFE_PANTR  (A5A6I6    ), TRFE_PAROL  (O93429    ), TRFE_PIG    (P09571    ), 
TRFE_RABIT  (P19134    ), TRFE_RAT    (P12346    ), TRFE_XENTR  (Q501K5    ), 
TRFL_BOVIN  (P24627    ), TRFL_BUBBU  (O77698    ), TRFL_CAMDR  (Q9TUM0    ), 
TRFL_CAPHI  (Q29477    ), TRFL_HORSE  (O77811    ), TRFL_HUMAN  (P02788    ), 
TRFL_MOUSE  (P08071    ), TRFL_PIG    (P14632    ), TRFM_HUMAN  (P08582    ), 
TRFM_MOUSE  (Q9R0R1    ), TRFM_RABIT  (O97490    ), TRF_BLADI   (Q02942    ), 
TRF_MANSE   (P22297    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 2 sequences 

MYP_STRPU   (P19615    ), TRF_SARPE   (Q26643    )


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			1 sequence
			


			
TRFE_DRONO  (P85895    )


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			8 sequences
			


			
BIOD_YEAST  (P53630    ), BIOF_ARATH  (Q8GW43    ), HYALP_CAVPO (P23613    ), 

			
MURB_BORBR  (Q7WGH4    ), MURB_BORPA  (Q7W509    ), MURB_BORPE  (Q9X6Y8    ), 
RSH6A_HUMAN (Q9H0K4    ), RSH6A_MOUSE (Q8CDR2    )


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			189 PDB
			


			1A8E; 1A8F; 1AIV; 1AOV; 1B0L; 1B1X; 1B3E; 1B7U; 1B7Z; 1BIY; 1BKA; 1BLF; 
			
				1BP5; 1BTJ; 1CB6; 1CE2; 1D3K; 1D4N; 1DOT; 1DSN; 1DTG; 1DTZ; 1EH3; 1F9B; 
				1FCK; 1FQE; 1FQF; 1GV8; 1GVC; 1H43; 1H44; 1H45; 1H76; 1HSE; 1I6B; 1I6Q; 
				1IEJ; 1IQ7; 1JNF; 1JQF; 1JW1; 1L5T; 1LCF; 1LCT; 1LFG; 1LFH; 1LFI; 1LGB; 
				1N04; 1N76; 1N7W; 1N7X; 1N84; 1NFT; 1NKX; 1NNT; 1OQG; 1OQH; 1OVB; 1OVT; 
				1QJM; 1RYO; 1RYX; 1SDX; 1SQY; 1SUV; 1TFA; 1VFD; 1VFE; 2ALU; 2AYS; 2B65; 
				2BJJ; 2D3I; 2DOJ; 2DP8; 2DQV; 2DS9; 2DSF; 2DVC; 2DWA; 2DWH; 2DWI; 2DWJ; 
				2DXR; 2DXY; 2DYX; 2E0S; 2E1S; 2FA7; 2G93; 2H4I; 2HAU; 2HAV; 2HCA; 2NUV; 
				2NWJ; 2O1L; 2O51; 2O7U; 2O84; 2OCU; 2P1S; 2PMS; 2PX1; 2Q8J; 2QJE; 2R71; 
				2R9J; 2ZMB; 3CFL; 3CI8; 3CR9; 3CRB; 3E9X; 3FGS; 3IAZ; 3IB0; 3IB1; 3IB2; 
				3K0V; 3KJ7; 3MC2; 3MJN; 3O97; 3QYT; 3RGY; 3S9L; 3S9M; 3S9N; 3SDF; 3SKP; 
				3TAJ; 3TOD; 3TTR; 3TUS; 3U72; 3U8Q; 3UGW; 3UK4; 3USD; 3V5A; 3V83; 3V89; 
				3V8X; 3VDF; 3VE1; 4DIG; 4DXU; 4FIM; 4FJP; 4FOR; 4G2Z; 4G77; 4G8H; 4GRK; 
				4H0W; 4N6P; 4NED; 4OQO; 4X1B; 4X1D; 5CRY; 5DYH; 5H52; 5HBC; 5WTD; 5X5P; 
				5Y6K; 6CTC; 6D03; 6D04; 6D05; 6JAS; 6SOY; 6SOZ; 6UJ6; 6WB6; 6XR0; 7ENU; 
				7EQU; 7EV0; 7EVQ; 7FDW; 7FFM; 7FFU; 7JRD; 7N88; 7Q1L
			
			

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