Entry: PS00226

General information about the entry

Entry name [info] IF_ROD_1
Accession [info] PS00226
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 18-JUL-2018 INFO UPDATE.
PROSITE Doc. [info] PDOC00198

Name and characterization of the entry

Description [info] Intermediate filament (IF) rod domain signature.
Pattern [info] 
[IV]-{K}-[TACI]-Y-[RKH]-{E}-[LM]-L-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2018_07 which contains 557'992 sequence entries.


Total number of hits 309 in 309 different sequences
Number of true positive hits 290 in 290 different sequences
Number of 'unknown' hits 0
Number of false positive hits 19 in 19 different sequences
Number of false negative sequences 55
Number of 'partial' sequences 9
Precision (true positives / (true positives + false positives)) 93.85 %
Recall (true positives / (true positives + false negatives)) 84.06 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 290 sequences 

AINX_BOVIN  (Q08DH7    ), AINX_HUMAN  (Q16352    ), AINX_MOUSE  (P46660    ), 

AINX_RAT    (P23565    ), AV71_ACAVI  (Q17107    ), DESM_BOVIN  (O62654    ), 
DESM_CANLF  (Q5XFN2    ), DESM_CHICK  (P02542    ), DESM_HUMAN  (P17661    ), 
DESM_MESAU  (P02541    ), DESM_MOUSE  (P31001    ), DESM_PIG    (P02540    ), 
DESM_RAT    (P48675    ), DESM_XENLA  (P23239    ), GFAP_BOVIN  (Q28115    ), 
GFAP_CARAU  (P48677    ), GFAP_DANRE  (Q58EE9    ), GFAP_HUMAN  (P14136    ), 
GFAP_MOUSE  (P03995    ), GFAP_PONAB  (Q5RA72    ), GFAP_RAT    (P47819    ), 
IF3T_TETCF  (P23729    ), IFA1_CAEEL  (P90901    ), IFA4_CAEEL  (P90900    ), 
IFB1_CAEEL  (Q19289    ), IFEA_ASCSU  (P23730    ), IFEA_HELAS  (P22488    ), 
IFEA_HELPO  (P16274    ), IFEB_ASCSU  (P23731    ), IFEB_HELPO  (P16275    ), 
IFE_BRALA   (Q04948    ), ION3_CARAU  (P18520    ), K118A_POLSE (A1KQY9    ), 
K118A_XENLA (P08802    ), K118B_XENLA (Q7SY65    ), K1C0_XENLA  (P02537    ), 
K1C10_BOVIN (P06394    ), K1C10_CANLF (Q6EIZ0    ), K1C10_HUMAN (P13645    ), 
K1C10_MOUSE (P02535    ), K1C10_RAT   (Q6IFW6    ), K1C11_LAMFL (Q8AWA7    ), 
K1C11_PROAT (Q5K2P6    ), K1C12_HUMAN (Q99456    ), K1C12_MOUSE (Q64291    ), 
K1C12_RABIT (Q28706    ), K1C12_RAT   (Q6IFW5    ), K1C13_HUMAN (P13646    ), 
K1C13_MOUSE (P08730    ), K1C13_PROAT (Q5K2P4    ), K1C13_RAT   (Q6IFV4    ), 
K1C14_BOVIN (P05785    ), K1C14_CHICK (Q6PVZ1    ), K1C14_HUMAN (P02533    ), 
K1C14_MOUSE (Q61781    ), K1C14_RAT   (Q6IFV1    ), K1C15_HUMAN (P19012    ), 
K1C15_MOUSE (Q61414    ), K1C15_PROAT (Q5K2P2    ), K1C15_RAT   (Q6IFV3    ), 
K1C15_SHEEP (O77727    ), K1C16_HUMAN (P08779    ), K1C16_MOUSE (Q9Z2K1    ), 
K1C17_BOVIN (A1L595    ), K1C17_HUMAN (Q04695    ), K1C17_MOUSE (Q9QWL7    ), 
K1C17_PANTR (A5A6M0    ), K1C17_RAT   (Q6IFU8    ), K1C18_ACIBE (Q7SYF8    ), 
K1C18_CARAU (Q07427    ), K1C18_DANRE (Q7ZTS4    ), K1C18_HUMAN (P05783    ), 
K1C18_MOUSE (P05784    ), K1C18_ONCMY (O57607    ), K1C18_RAT   (Q5BJY9    ), 
K1C18_SCYST (O57611    ), K1C18_XENTR (Q6P864    ), K1C19_BOVIN (P08728    ), 
K1C19_CHICK (O93256    ), K1C19_HUMAN (P08727    ), K1C19_MOUSE (P19001    ), 
K1C19_PONAB (Q5R8S9    ), K1C19_POTTR (P51856    ), K1C19_RAT   (Q63279    ), 
K1C1_XENLA  (P08777    ), K1C20_BOVIN (A6QQQ9    ), K1C20_HUMAN (P35900    ), 
K1C20_MOUSE (Q9D312    ), K1C20_RAT   (P25030    ), K1C23_HUMAN (Q9C075    ), 
K1C23_MOUSE (Q99PS0    ), K1C24_HUMAN (Q2M2I5    ), K1C39_HUMAN (Q6A163    ), 
K1C39_MOUSE (Q6IFX4    ), K1C39_RAT   (Q6IFW3    ), K1C40_MOUSE (Q6IFX3    ), 
K1C40_RAT   (Q6IFW2    ), K1C42_MOUSE (Q6IFX2    ), K1C42_RAT   (Q6IFU7    ), 
K1C4_XENLA  (P05781    ), K1C5_XENLA  (P08778    ), K1C9_HUMAN  (P35527    ), 
K1C9_RAT    (Q8CIS9    ), K1H1_HUMAN  (Q15323    ), K1H1_MOUSE  (Q61765    ), 
K1H1_PANTR  (A5A6M5    ), K1H2_HUMAN  (Q14532    ), K1H2_MOUSE  (Q62168    ), 
K1M1_SHEEP  (P02534    ), K1M2_SHEEP  (P25690    ), K22E_CANLF  (Q6EIZ1    ), 
K22E_HUMAN  (P35908    ), K22E_MOUSE  (Q3TTY5    ), K22E_RAT    (Q6IG02    ), 
K22O_HUMAN  (Q01546    ), K22O_MOUSE  (Q3UV17    ), K2C1B_HUMAN (Q7Z794    ), 
K2C1B_MOUSE (Q6IFZ6    ), K2C1_CANLF  (Q6EIY9    ), K2C1_HUMAN  (P04264    ), 
K2C1_MOUSE  (P04104    ), K2C1_PANTR  (A5A6M6    ), K2C1_RAT    (Q6IMF3    ), 
K2C1_XENLA  (P04266    ), K2C2_XENLA  (P04265    ), K2C3_BOVIN  (P04261    ), 
K2C3_HUMAN  (P12035    ), K2C3_RABIT  (Q29426    ), K2C4_BOVIN  (P04260    ), 
K2C4_HUMAN  (P19013    ), K2C4_MOUSE  (P07744    ), K2C4_RAT    (Q6IG00    ), 
K2C5_BOVIN  (Q5XQN5    ), K2C5_HUMAN  (P13647    ), K2C5_MOUSE  (Q922U2    ), 
K2C5_PANTR  (A5A6M8    ), K2C5_RAT    (Q6P6Q2    ), K2C5_XENLA  (P16878    ), 
K2C6A_HUMAN (P02538    ), K2C6A_MOUSE (P50446    ), K2C6A_RAT   (Q4FZU2    ), 
K2C6B_HUMAN (P04259    ), K2C6B_MOUSE (Q9Z331    ), K2C6C_HUMAN (P48668    ), 
K2C71_BOVIN (Q148H5    ), K2C71_HUMAN (Q3SY84    ), K2C71_MOUSE (Q9R0H5    ), 
K2C72_BOVIN (Q148H8    ), K2C72_HUMAN (Q14CN4    ), K2C72_MOUSE (Q6IME9    ), 
K2C72_RAT   (Q6IG04    ), K2C73_BOVIN (A7YWK3    ), K2C73_HUMAN (Q86Y46    ), 
K2C73_MOUSE (Q6NXH9    ), K2C73_RAT   (Q6IG03    ), K2C74_HUMAN (Q7RTS7    ), 
K2C74_MOUSE (Q6IFZ9    ), K2C75_BOVIN (Q08D91    ), K2C75_HUMAN (O95678    ), 
K2C75_MOUSE (Q8BGZ7    ), K2C75_RAT   (Q6IG05    ), K2C78_BOVIN (A6QNX5    ), 
K2C78_HUMAN (Q8N1N4    ), K2C79_BOVIN (Q148H7    ), K2C79_HUMAN (Q5XKE5    ), 
K2C79_MOUSE (Q8VED5    ), K2C7_BOVIN  (Q29S21    ), K2C7_HUMAN  (P08729    ), 
K2C7_MOUSE  (Q9DCV7    ), K2C7_PANTR  (A5A6N0    ), K2C7_POTTR  (Q8HZR5    ), 
K2C7_RAT    (Q6IG12    ), K2C8_BOVIN  (P05786    ), K2C8_DANRE  (Q6NWF6    ), 
K2C8_HUMAN  (P05787    ), K2C8_MOUSE  (P11679    ), K2C8_PROAT  (Q5K2N3    ), 
K2C8_RAT    (Q10758    ), K2C8_XENLA  (P08776    ), K2CA_BOVIN  (P04263    ), 
K2CB_BOVIN  (P04262    ), K2CO_CHICK  (O93532    ), K2M2_SHEEP  (P15241    ), 
K2M3_SHEEP  (P25691    ), KRT34_HUMAN (O76011    ), KRT34_MOUSE (Q9D646    ), 
KRT35_BOVIN (Q0P5J7    ), KRT35_HUMAN (Q92764    ), KRT35_MOUSE (Q497I4    ), 
KRT35_SHEEP (B0LKP1    ), KRT36_HUMAN (O76013    ), KRT36_MOUSE (B1AQ75    ), 
KRT37_HUMAN (O76014    ), KRT38_HUMAN (O76015    ), KRT81_BOVIN (Q148H4    ), 
KRT81_HUMAN (Q14533    ), KRT81_MOUSE (Q9ERE2    ), KRT82_HUMAN (Q9NSB4    ), 
KRT82_MOUSE (Q99M74    ), KRT83_BOVIN (A4FUZ0    ), KRT83_HUMAN (P78385    ), 
KRT84_HUMAN (Q9NSB2    ), KRT84_MOUSE (Q99M73    ), KRT85_HUMAN (P78386    ), 
KRT85_MOUSE (Q9Z2T6    ), KRT86_HUMAN (O43790    ), KRT86_MOUSE (P97861    ), 
KRT87_MOUSE (Q6IMF0    ), KT222_BOVIN (Q2KI75    ), KT222_HUMAN (Q8N1A0    ), 
KT222_MOUSE (Q8CCX5    ), KT33A_HUMAN (O76009    ), KT33A_MOUSE (Q8K0Y2    ), 
KT33A_PANTR (A5A6P3    ), KT33B_HUMAN (Q14525    ), KT33B_MOUSE (Q61897    ), 
LAML1_XENLA (P09010    ), LAML2_XENLA (P21910    ), LAML3_XENLA (P10999    ), 
LMNA_CHICK  (P13648    ), LMNA_HUMAN  (P02545    ), LMNA_MOUSE  (P48678    ), 
LMNA_PIG    (Q3ZD69    ), LMNA_RAT    (P48679    ), LMNA_XENLA  (P11048    ), 
LMNB1_CHICK (P14731    ), LMNB1_HUMAN (P20700    ), LMNB1_MOUSE (P14733    ), 
LMNB1_RAT   (P70615    ), LMNB2_CHICK (P14732    ), LMNB2_HUMAN (Q03252    ), 
LMNB2_MOUSE (P21619    ), NEST_DANRE  (P86839    ), NEST_HUMAN  (P48681    ), 
NEST_MESAU  (Q9Z1Q1    ), NEST_MOUSE  (Q6P5H2    ), NEST_RAT    (P21263    ), 
NF60_DORPE  (Q01240    ), NF70_DORPE  (Q01241    ), NFH_HUMAN   (P12036    ), 
NFH_MOUSE   (P19246    ), NFH_RAT     (P16884    ), NFL_BOVIN   (P02548    ), 
NFL_COTJA   (Q02916    ), NFL_HUMAN   (P07196    ), NFL_MOUSE   (P08551    ), 
NFL_PIG     (P02547    ), NFL_PONAB   (Q5R408    ), NFL_RAT     (P19527    ), 
NFL_XENLA   (P35616    ), NFL_XENTR   (B4F721    ), NFM_BOVIN   (O77788    ), 
NFM_CHICK   (P16053    ), NFM_HUMAN   (P07197    ), NFM_MOUSE   (P08553    ), 
NFM_PIG     (P08552    ), NFM_RABIT   (P54938    ), NFM_RAT     (P12839    ), 
OV71_ONCVO  (P31732    ), PERI_BOVIN  (A6QQJ3    ), PERI_HUMAN  (P41219    ), 
PERI_MOUSE  (P15331    ), PERI_RAT    (P21807    ), PERI_XENLA  (P48676    ), 
PLST_CARAU  (P31393    ), RGP51_LYMST (Q6QUW1    ), SYNEM_HUMAN (O15061    ), 
SYNEM_MOUSE (Q70IV5    ), TANA_XENLA  (Q01550    ), TBFA_EPTST  (Q90501    ), 
TBFG_EPTST  (Q90502    ), VIM1_CARAU  (P48671    ), VIM1_XENLA  (P24789    ), 
VIM2_CARAU  (P48672    ), VIM4_XENLA  (P24790    ), VIMB_CARAU  (P48673    ), 
VIME_BOVIN  (P48616    ), VIME_CHICK  (P09654    ), VIME_CHLAE  (P84198    ), 
VIME_CRIGR  (P48670    ), VIME_CYPCA  (Q92155    ), VIME_HUMAN  (P08670    ), 
VIME_MACFA  (Q4R4X4    ), VIME_MESAU  (P02544    ), VIME_MOUSE  (P20152    ), 
VIME_ONCMY  (P48674    ), VIME_PANTR  (Q5R1W8    ), VIME_PIG    (P02543    ), 
VIME_RAT    (P31000    ), XNIF_XENLA  (P35617    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 55 sequences 

BFSP1_BOVIN (Q06002    ), BFSP1_CHICK (Q06637    ), BFSP1_HUMAN (Q12934    ), 

BFSP1_MOUSE (A2AMT1    ), BFSP1_RAT   (Q02435    ), BFSP2_BOVIN (Q28177    ), 
BFSP2_HUMAN (Q13515    ), BFSP2_MOUSE (Q6NVD9    ), IFA2_CAEEL  (O02365    ), 
IFA3_CAEEL  (Q21065    ), IFB2_CAEEL  (Q19286    ), IFC1_CAEEL  (O45168    ), 
IFC2_CAEBR  (Q5WN60    ), IFC2_CAEEL  (Q21067    ), IFD1_CAEEL  (Q86DC6    ), 
IFD2_CAEEL  (Q19782    ), IFP1_CAEEL  (Q09501    ), K1C13_ONCMY (Q8JFQ6    ), 
K1C1_CARAU  (Q90303    ), K1C24_MOUSE (A1L317    ), K1C24_RAT   (Q6IFX1    ), 
K1C25_BOVIN (Q0P5J4    ), K1C25_CAPHI (Q6R650    ), K1C25_HUMAN (Q7Z3Z0    ), 
K1C25_MOUSE (Q8VCW2    ), K1C25_PANTR (A5A6N2    ), K1C25_RAT   (Q6IFX0    ), 
K1C25_SHEEP (Q9BGM5    ), K1C26_BOVIN (A6H712    ), K1C26_HUMAN (Q7Z3Y9    ), 
K1C26_MOUSE (Q3TRJ4    ), K1C27_BOVIN (Q0P5J6    ), K1C27_CAPHI (Q6R649    ), 
K1C27_HUMAN (Q7Z3Y8    ), K1C27_MOUSE (Q9Z320    ), K1C27_RAT   (Q6IFW8    ), 
K1C28_BOVIN (Q148H6    ), K1C28_HUMAN (Q7Z3Y7    ), K1C28_MOUSE (A6BLY7    ), 
K1C40_BOVIN (A7YWM2    ), K1C40_HUMAN (Q6A162    ), K1C9_CANLF  (O18740    ), 
K1C9_MOUSE  (Q6RHW0    ), K2C1B_RAT   (Q6IG01    ), K2C74_BOVIN (A3KN27    ), 
K2C80_BOVIN (A0JND2    ), K2C80_HUMAN (Q6KB66    ), K2C80_MOUSE (Q0VBK2    ), 
K2C80_RAT   (Q6IMF1    ), KR87P_HUMAN (A6NCN2    ), LAM0_DROME  (P08928    ), 
LAMC_DROME  (Q03427    ), LMN1_CAEEL  (Q21443    ), SYNCI_HUMAN (Q9H7C4    ), 
SYNCI_MOUSE (Q9EPM5    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 9 sequences 

K1C19_MESAU (P86246    ), K1C20_PIG   (Q29218    ), K1C3_XENLA  (P05782    ), 

K2C8_MESAU  (P86247    ), K2C8_POTTR  (Q28810    ), K2M1_SHEEP  (P02539    ), 
KRT_CEREL   (P86498    ), NFH_PIG     (P12037    ), VIME_SHEEP  (Q9MZA9    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 19 sequences 

ADDB_DESRM  (A4J4E2    ), AIM6_CANGA  (Q6FWH9    ), ATPG_DESVH  (Q72E03    ), 

BAH_STRHY   (Q01109    ), CEMA_TUPAK  (Q3ZJ15    ), FAB1D_ARATH (Q9XID0    ), 
GLYL3_HUMAN (Q5SZD4    ), LIX1_CHICK  (Q8UVV7    ), LIX1_HUMAN  (Q8N485    ), 
LIX1_MOUSE  (Q6P566    ), LPH_RABIT   (P09849    ), MEND_NOCSJ  (A1SE17    ), 
OGRL1_XENTR (A2VCV0    ), PPR36_ARATH (Q0WKV3    ), RFBF_BACSU  (O06486    ), 
RS10_NOVAD  (Q2G8Y1    ), RS10_SACD2  (Q21M58    ), TTC27_CAEEL (P41842    ), 
TYSY_SYMTH  (Q67JQ1    )
» more

PDB
[Detailed view]		 10 PDB

1GK4; 1GK6; 1X8Y; 2XV5; 3TNU; 3TYY; 3V4Q; 3V4W; 3V5B; 4ZRY

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