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| Entry: PS00226 |
General information about the entry
| Entry name [info] | IF_ROD_1 |
| Accession [info] | PS00226 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 22-APR-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00198 |
Name and characterization of the entry
| Description [info] | Intermediate filament (IF) rod domain signature. |
| Pattern [info] |
[IV]-{K}-[TACI]-Y-[RKH]-{E}-[LM]-L-[DE].
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Numerical results [info]
| Total number of hits | 309 in 309 different sequences |
| Number of true positive hits | 290 in 290 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 19 in 19 different sequences |
| Number of false negative sequences | 55 |
| Number of 'partial' sequences | 9 |
| Precision (true positives / (true positives + false positives)) | 93.85 % |
| Recall (true positives / (true positives + false negatives)) | 84.06 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
290 sequences
AINX_BOVIN (Q08DH7 ), AINX_HUMAN (Q16352 ), AINX_MOUSE (P46660 ), AINX_RAT (P23565 ), AV71_ACAVI (Q17107 ), DESM_BOVIN (O62654 ), DESM_CANLF (Q5XFN2 ), DESM_CHICK (P02542 ), DESM_HUMAN (P17661 ), DESM_MESAU (P02541 ), DESM_MOUSE (P31001 ), DESM_PIG (P02540 ), DESM_RAT (P48675 ), DESM_XENLA (P23239 ), GFAP_BOVIN (Q28115 ), GFAP_CARAU (P48677 ), GFAP_DANRE (Q58EE9 ), GFAP_HUMAN (P14136 ), GFAP_MOUSE (P03995 ), GFAP_PONAB (Q5RA72 ), GFAP_RAT (P47819 ), IF3T_TETCF (P23729 ), IFA1_CAEEL (P90901 ), IFA4_CAEEL (P90900 ), IFB1_CAEEL (Q19289 ), IFEA_ASCSU (P23730 ), IFEA_CORAP (P22488 ), IFEA_HELPO (P16274 ), IFEB_ASCSU (P23731 ), IFEB_HELPO (P16275 ), IFE_BRALA (Q04948 ), ION3_CARAU (P18520 ), K118A_POLSE (A1KQY9 ), K118A_XENLA (P08802 ), K118B_XENLA (Q7SY65 ), K1C0_XENLA (P02537 ), K1C10_BOVIN (P06394 ), K1C10_CANLF (Q6EIZ0 ), K1C10_HUMAN (P13645 ), K1C10_MOUSE (P02535 ), K1C10_RAT (Q6IFW6 ), K1C11_LAMFL (Q8AWA7 ), K1C11_PROAT (Q5K2P6 ), K1C12_HUMAN (Q99456 ), K1C12_MOUSE (Q64291 ), K1C12_RABIT (Q28706 ), K1C12_RAT (Q6IFW5 ), K1C13_HUMAN (P13646 ), K1C13_MOUSE (P08730 ), K1C13_PROAT (Q5K2P4 ), K1C13_RAT (Q6IFV4 ), K1C14_BOVIN (P05785 ), K1C14_CHICK (Q6PVZ1 ), K1C14_HUMAN (P02533 ), K1C14_MOUSE (Q61781 ), K1C14_RAT (Q6IFV1 ), K1C15_HUMAN (P19012 ), K1C15_MOUSE (Q61414 ), K1C15_PROAT (Q5K2P2 ), K1C15_RAT (Q6IFV3 ), K1C15_SHEEP (O77727 ), K1C16_HUMAN (P08779 ), K1C16_MOUSE (Q9Z2K1 ), K1C17_BOVIN (A1L595 ), K1C17_HUMAN (Q04695 ), K1C17_MOUSE (Q9QWL7 ), K1C17_PANTR (A5A6M0 ), K1C17_RAT (Q6IFU8 ), K1C18_ACIBE (Q7SYF8 ), K1C18_CARAU (Q07427 ), K1C18_DANRE (Q7ZTS4 ), K1C18_HUMAN (P05783 ), K1C18_MOUSE (P05784 ), K1C18_ONCMY (O57607 ), K1C18_RAT (Q5BJY9 ), K1C18_SCYST (O57611 ), K1C18_XENTR (Q6P864 ), K1C19_BOVIN (P08728 ), K1C19_CHICK (O93256 ), K1C19_HUMAN (P08727 ), K1C19_MOUSE (P19001 ), K1C19_PONAB (Q5R8S9 ), K1C19_POTTR (P51856 ), K1C19_RAT (Q63279 ), K1C1_XENLA (P08777 ), K1C20_BOVIN (A6QQQ9 ), K1C20_HUMAN (P35900 ), K1C20_MOUSE (Q9D312 ), K1C20_RAT (P25030 ), K1C23_HUMAN (Q9C075 ), K1C23_MOUSE (Q99PS0 ), K1C24_HUMAN (Q2M2I5 ), K1C39_HUMAN (Q6A163 ), K1C39_MOUSE (Q6IFX4 ), K1C39_RAT (Q6IFW3 ), K1C40_MOUSE (Q6IFX3 ), K1C40_RAT (Q6IFW2 ), K1C42_MOUSE (Q6IFX2 ), K1C42_RAT (Q6IFU7 ), K1C4_XENLA (P05781 ), K1C5_XENLA (P08778 ), K1C9_HUMAN (P35527 ), K1C9_RAT (Q8CIS9 ), K1H1_HUMAN (Q15323 ), K1H1_MOUSE (Q61765 ), K1H1_PANTR (A5A6M5 ), K1H2_HUMAN (Q14532 ), K1H2_MOUSE (Q62168 ), K1M1_SHEEP (P02534 ), K1M2_SHEEP (P25690 ), K22E_CANLF (Q6EIZ1 ), K22E_HUMAN (P35908 ), K22E_MOUSE (Q3TTY5 ), K22E_RAT (Q6IG02 ), K22O_HUMAN (Q01546 ), K22O_MOUSE (Q3UV17 ), K2C1B_HUMAN (Q7Z794 ), K2C1B_MOUSE (Q6IFZ6 ), K2C1_CANLF (Q6EIY9 ), K2C1_HUMAN (P04264 ), K2C1_MOUSE (P04104 ), K2C1_PANTR (A5A6M6 ), K2C1_RAT (Q6IMF3 ), K2C1_XENLA (P04266 ), K2C2_XENLA (P04265 ), K2C3_BOVIN (P04261 ), K2C3_HUMAN (P12035 ), K2C3_RABIT (Q29426 ), K2C4_BOVIN (P04260 ), K2C4_HUMAN (P19013 ), K2C4_MOUSE (P07744 ), K2C4_RAT (Q6IG00 ), K2C5_BOVIN (Q5XQN5 ), K2C5_HUMAN (P13647 ), K2C5_MOUSE (Q922U2 ), K2C5_PANTR (A5A6M8 ), K2C5_RAT (Q6P6Q2 ), K2C5_XENLA (P16878 ), K2C6A_HUMAN (P02538 ), K2C6A_MOUSE (P50446 ), K2C6A_RAT (Q4FZU2 ), K2C6B_HUMAN (P04259 ), K2C6B_MOUSE (Q9Z331 ), K2C6C_HUMAN (P48668 ), K2C71_BOVIN (Q148H5 ), K2C71_HUMAN (Q3SY84 ), K2C71_MOUSE (Q9R0H5 ), K2C72_BOVIN (Q148H8 ), K2C72_HUMAN (Q14CN4 ), K2C72_MOUSE (Q6IME9 ), K2C72_RAT (Q6IG04 ), K2C73_BOVIN (A7YWK3 ), K2C73_HUMAN (Q86Y46 ), K2C73_MOUSE (Q6NXH9 ), K2C73_RAT (Q6IG03 ), K2C74_HUMAN (Q7RTS7 ), K2C74_MOUSE (Q6IFZ9 ), K2C75_BOVIN (Q08D91 ), K2C75_HUMAN (O95678 ), K2C75_MOUSE (Q8BGZ7 ), K2C75_RAT (Q6IG05 ), K2C78_BOVIN (A6QNX5 ), K2C78_HUMAN (Q8N1N4 ), K2C79_BOVIN (Q148H7 ), K2C79_HUMAN (Q5XKE5 ), K2C79_MOUSE (Q8VED5 ), K2C7_BOVIN (Q29S21 ), K2C7_HUMAN (P08729 ), K2C7_MOUSE (Q9DCV7 ), K2C7_PANTR (A5A6N0 ), K2C7_POTTR (Q8HZR5 ), K2C7_RAT (Q6IG12 ), K2C8_BOVIN (P05786 ), K2C8_DANRE (Q6NWF6 ), K2C8_HUMAN (P05787 ), K2C8_MOUSE (P11679 ), K2C8_PROAT (Q5K2N3 ), K2C8_RAT (Q10758 ), K2C8_XENLA (P08776 ), K2CA_BOVIN (P04263 ), K2CB_BOVIN (P04262 ), K2CO_CHICK (O93532 ), K2M2_SHEEP (P15241 ), K2M3_SHEEP (P25691 ), KRT34_HUMAN (O76011 ), KRT34_MOUSE (Q9D646 ), KRT35_BOVIN (Q0P5J7 ), KRT35_HUMAN (Q92764 ), KRT35_MOUSE (Q497I4 ), KRT35_SHEEP (B0LKP1 ), KRT36_HUMAN (O76013 ), KRT36_MOUSE (B1AQ75 ), KRT37_HUMAN (O76014 ), KRT38_HUMAN (O76015 ), KRT81_BOVIN (Q148H4 ), KRT81_HUMAN (Q14533 ), KRT81_MOUSE (Q9ERE2 ), KRT82_HUMAN (Q9NSB4 ), KRT82_MOUSE (Q99M74 ), KRT83_BOVIN (A4FUZ0 ), KRT83_HUMAN (P78385 ), KRT84_HUMAN (Q9NSB2 ), KRT84_MOUSE (Q99M73 ), KRT85_HUMAN (P78386 ), KRT85_MOUSE (Q9Z2T6 ), KRT86_HUMAN (O43790 ), KRT86_MOUSE (P97861 ), KRT87_MOUSE (Q6IMF0 ), KT222_BOVIN (Q2KI75 ), KT222_HUMAN (Q8N1A0 ), KT222_MOUSE (Q8CCX5 ), KT33A_HUMAN (O76009 ), KT33A_MOUSE (Q8K0Y2 ), KT33A_PANTR (A5A6P3 ), KT33B_HUMAN (Q14525 ), KT33B_MOUSE (Q61897 ), LAML1_XENLA (P09010 ), LAML2_XENLA (P21910 ), LAML3_XENLA (P10999 ), LMNA_CHICK (P13648 ), LMNA_HUMAN (P02545 ), LMNA_MOUSE (P48678 ), LMNA_PIG (Q3ZD69 ), LMNA_RAT (P48679 ), LMNA_XENLA (P11048 ), LMNB1_CHICK (P14731 ), LMNB1_HUMAN (P20700 ), LMNB1_MOUSE (P14733 ), LMNB1_RAT (P70615 ), LMNB2_CHICK (P14732 ), LMNB2_HUMAN (Q03252 ), LMNB2_MOUSE (P21619 ), NEST_DANRE (P86839 ), NEST_HUMAN (P48681 ), NEST_MESAU (Q9Z1Q1 ), NEST_MOUSE (Q6P5H2 ), NEST_RAT (P21263 ), NF60_DORPE (Q01240 ), NF70_DORPE (Q01241 ), NFH_HUMAN (P12036 ), NFH_MOUSE (P19246 ), NFH_RAT (P16884 ), NFL_BOVIN (P02548 ), NFL_COTJA (Q02916 ), NFL_HUMAN (P07196 ), NFL_MOUSE (P08551 ), NFL_PIG (P02547 ), NFL_PONAB (Q5R408 ), NFL_RAT (P19527 ), NFL_XENLA (P35616 ), NFL_XENTR (B4F721 ), NFM_BOVIN (O77788 ), NFM_CHICK (P16053 ), NFM_HUMAN (P07197 ), NFM_MOUSE (P08553 ), NFM_PIG (P08552 ), NFM_RABIT (P54938 ), NFM_RAT (P12839 ), OV71_ONCVO (P31732 ), PERI_BOVIN (A6QQJ3 ), PERI_HUMAN (P41219 ), PERI_MOUSE (P15331 ), PERI_RAT (P21807 ), PERI_XENLA (P48676 ), PLST_CARAU (P31393 ), RGP51_LYMST (Q6QUW1 ), SYNEM_HUMAN (O15061 ), SYNEM_MOUSE (Q70IV5 ), TANA_XENLA (Q01550 ), TBFA_EPTST (Q90501 ), TBFG_EPTST (Q90502 ), VIM1_CARAU (P48671 ), VIM1_XENLA (P24789 ), VIM2_CARAU (P48672 ), VIM4_XENLA (P24790 ), VIMB_CARAU (P48673 ), VIME_BOVIN (P48616 ), VIME_CHICK (P09654 ), VIME_CHLAE (P84198 ), VIME_CRIGR (P48670 ), VIME_CYPCA (Q92155 ), VIME_HUMAN (P08670 ), VIME_MACFA (Q4R4X4 ), VIME_MESAU (P02544 ), VIME_MOUSE (P20152 ), VIME_ONCMY (P48674 ), VIME_PANTR (Q5R1W8 ), VIME_PIG (P02543 ), VIME_RAT (P31000 ), XNIF_XENLA (P35617 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
55 sequences
BFSP1_BOVIN (Q06002 ), BFSP1_CHICK (Q06637 ), BFSP1_HUMAN (Q12934 ), BFSP1_MOUSE (A2AMT1 ), BFSP1_RAT (Q02435 ), BFSP2_BOVIN (Q28177 ), BFSP2_HUMAN (Q13515 ), BFSP2_MOUSE (Q6NVD9 ), IFA2_CAEEL (O02365 ), IFA3_CAEEL (Q21065 ), IFB2_CAEEL (Q19286 ), IFC1_CAEEL (O45168 ), IFC2_CAEBR (Q5WN60 ), IFC2_CAEEL (Q21067 ), IFD1_CAEEL (Q86DC6 ), IFD2_CAEEL (Q19782 ), IFP1_CAEEL (Q09501 ), K1C13_ONCMY (Q8JFQ6 ), K1C1_CARAU (Q90303 ), K1C24_MOUSE (A1L317 ), K1C24_RAT (Q6IFX1 ), K1C25_BOVIN (Q0P5J4 ), K1C25_CAPHI (Q6R650 ), K1C25_HUMAN (Q7Z3Z0 ), K1C25_MOUSE (Q8VCW2 ), K1C25_PANTR (A5A6N2 ), K1C25_RAT (Q6IFX0 ), K1C25_SHEEP (Q9BGM5 ), K1C26_BOVIN (A6H712 ), K1C26_HUMAN (Q7Z3Y9 ), K1C26_MOUSE (Q3TRJ4 ), K1C27_BOVIN (Q0P5J6 ), K1C27_CAPHI (Q6R649 ), K1C27_HUMAN (Q7Z3Y8 ), K1C27_MOUSE (Q9Z320 ), K1C27_RAT (Q6IFW8 ), K1C28_BOVIN (Q148H6 ), K1C28_HUMAN (Q7Z3Y7 ), K1C28_MOUSE (A6BLY7 ), K1C40_BOVIN (A7YWM2 ), K1C40_HUMAN (Q6A162 ), K1C9_CANLF (O18740 ), K1C9_MOUSE (Q6RHW0 ), K2C1B_RAT (Q6IG01 ), K2C74_BOVIN (A3KN27 ), K2C80_BOVIN (A0JND2 ), K2C80_HUMAN (Q6KB66 ), K2C80_MOUSE (Q0VBK2 ), K2C80_RAT (Q6IMF1 ), KR87P_HUMAN (A6NCN2 ), LAM0_DROME (P08928 ), LAMC_DROME (Q03427 ), LMN1_CAEEL (Q21443 ), SYNCI_HUMAN (Q9H7C4 ), SYNCI_MOUSE (Q9EPM5 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
9 sequences
K1C19_MESAU (P86246 ), K1C20_PIG (Q29218 ), K1C3_XENLA (P05782 ), K2C8_MESAU (P86247 ), K2C8_POTTR (Q28810 ), K2M1_SHEEP (P02539 ), KRT_CEREL (P86498 ), NFH_PIG (P12037 ), VIME_SHEEP (Q9MZA9 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
19 sequences
ADDB_DESRM (A4J4E2 ), AIM6_CANGA (Q6FWH9 ), ATPG_DESVH (Q72E03 ), BAH_STRHY (Q01109 ), CEMA_TUPAK (Q3ZJ15 ), FAB1D_ARATH (Q9XID0 ), GLYL3_HUMAN (Q5SZD4 ), LIX1_CHICK (Q8UVV7 ), LIX1_HUMAN (Q8N485 ), LIX1_MOUSE (Q6P566 ), LPH_RABIT (P09849 ), MEND_NOCSJ (A1SE17 ), OGRL1_XENTR (A2VCV0 ), PPR36_ARATH (Q0WKV3 ), RFBF_BACSU (O06486 ), RS10_NOVAD (Q2G8Y1 ), RS10_SACD2 (Q21M58 ), TTC27_CAEEL (P41842 ), TYSY_SYMTH (Q67JQ1 )» more |
| PDB [Detailed view] |
12 PDB
1GK4; 1GK6; 1X8Y; 2XV5; 3TNU; 3TYY; 3V4Q; 3V4W; 3V5B; 4ZRY; 6JFV; 6UUI |
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