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Entry: PS00227

General information about the entry

Entry name [info] TUBULIN
Accession [info] PS00227
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-JUN-1994 DATA UPDATE;
18-SEP-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00199

Name and characterization of the entry

Description [info] Tubulin subunits alpha, beta, and gamma signature.
Pattern [info]
[SAG]-G-G-T-G-[SA]-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_08 which contains 560'823 sequence entries.


Total number of hits 464 in 464 different sequences
Number of true positive hits 430 in 430 different sequences
Number of 'unknown' hits 0
Number of false positive hits 34 in 34 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 13
Precision (true positives / (true positives + false positives)) 92.67 %
Recall (true positives / (true positives + false negatives)) 98.40 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
430 sequences

CETZ1_HALVD (D4GVD7    ), CETZ3_HALVD (D4GW48    ), CETZ4_HALVD (D4GQ67    ), 
CETZ5_HALVD (D4GU26    ), CETZ_PYRAB  (Q9V0H5    ), CETZ_PYRFU  (Q8U0S7    ), 
CETZ_PYRHO  (O59060    ), CETZ_THEKO  (Q9HHD0    ), FTSZL_MAGGM (Q3BK72    ), 
FTSZ_MAGGM  (V6F5E5    ), TBA13_NAEPR (Q25563    ), TBA1A_CRIGR (P68362    ), 
TBA1A_HUMAN (Q71U36    ), TBA1A_MOUSE (P68369    ), TBA1A_PANTR (A5A6J1    ), 
TBA1A_PIG   (P02550    ), TBA1A_RAT   (P68370    ), TBA1B_BOVIN (P81947    ), 
TBA1B_CRIGR (P68361    ), TBA1B_HUMAN (P68363    ), TBA1B_MACFA (Q4R538    ), 
TBA1B_MERUN (P68360    ), TBA1B_MOUSE (P05213    ), TBA1B_PANTR (Q5R1W4    ), 
TBA1B_PIG   (Q2XVP4    ), TBA1B_RAT   (Q6P9V9    ), TBA1C_BOVIN (Q3ZCJ7    ), 
TBA1C_CRIGR (P68365    ), TBA1C_HUMAN (Q9BQE3    ), TBA1C_MOUSE (P68373    ), 
TBA1C_RAT   (Q6AYZ1    ), TBA1D_BOVIN (Q2HJ86    ), TBA1_ANEPH  (P33623    ), 
TBA1_APLCA  (Q8T6A5    ), TBA1_ARATH  (P11139    ), TBA1_CHICK  (P02552    ), 
TBA1_CHLRE  (P09204    ), TBA1_DROME  (P06603    ), TBA1_ELEIN  (O22347    ), 
TBA1_EMENI  (P24633    ), TBA1_ENTHI  (P31017    ), TBA1_GOSHI  (Q6VAG1    ), 
TBA1_HOMAM  (Q25008    ), TBA1_HORVU  (Q43473    ), TBA1_MAIZE  (P14640    ), 
TBA1_NAEGR  (P11237    ), TBA1_NEUCR  (P38668    ), TBA1_ORYSJ  (P28752    ), 
TBA1_PARLI  (P18258    ), TBA1_PEA    (P46259    ), TBA1_PELFA  (Q40831    ), 
TBA1_PNECA  (P53372    ), TBA1_SCHPO  (P04688    ), TBA1_STYLE  (P07304    ), 
TBA1_VOLCA  (P11481    ), TBA1_YEAST  (P09733    ), TBA2_ANEPH  (P33624    ), 
TBA2_ARATH  (B9DGT7    ), TBA2_CAEEL  (P34690    ), TBA2_CHICK  (P08070    ), 
TBA2_CHLRE  (P09205    ), TBA2_DROME  (P06604    ), TBA2_ELEIN  (O22348    ), 
TBA2_EMENI  (P24634    ), TBA2_GOSHI  (Q6VAG0    ), TBA2_HOMAM  (Q94570    ), 
TBA2_HORVU  (Q96460    ), TBA2_MAIZE  (P14641    ), TBA2_NEUCR  (P38669    ), 
TBA2_ORYSJ  (Q53M52    ), TBA2_PATVU  (P41383    ), TBA2_PELFA  (Q40832    ), 
TBA2_SCHPO  (P04689    ), TBA2_STYLE  (P09243    ), TBA3C_HUMAN (P0DPH7    ), 
TBA3D_HUMAN (P0DPH8    ), TBA3E_HUMAN (Q6PEY2    ), TBA3_ARATH  (Q56WH1    ), 
TBA3_BOVIN  (Q32KN8    ), TBA3_CAEEL  (P91910    ), TBA3_CHICK  (P09642    ), 
TBA3_DROME  (P06605    ), TBA3_ELEIN  (O22349    ), TBA3_HOMAM  (Q94572    ), 
TBA3_HORVU  (Q9ZRR5    ), TBA3_MAIZE  (P22275    ), TBA3_MOUSE  (P05214    ), 
TBA3_RAT    (Q68FR8    ), TBA3_YEAST  (P09734    ), TBA4A_BOVIN (P81948    ), 
TBA4A_HUMAN (P68366    ), TBA4A_MACFA (P68367    ), TBA4A_MOUSE (P68368    ), 
TBA4A_RAT   (Q5XIF6    ), TBA4_ARATH  (Q0WV25    ), TBA4_CHICK  (P09643    ), 
TBA4_DROME  (P06606    ), TBA4_GOSHI  (Q6VAF9    ), TBA5_ARATH  (B9DHQ0    ), 
TBA5_CHICK  (P09644    ), TBA5_MAIZE  (Q02245    ), TBA6_ARATH  (P29511    ), 
TBA6_MAIZE  (P33627    ), TBA6_NAEPR  (Q962P8    ), TBA8_BOVIN  (Q2HJB8    ), 
TBA8_CAEEL  (P52274    ), TBA8_CHICK  (P09645    ), TBA8_HUMAN  (Q9NY65    ), 
TBA8_MOUSE  (Q9JJZ2    ), TBA8_RAT    (Q6AY56    ), TBAA_SCHCO  (P49741    ), 
TBAB_SCHCO  (P49742    ), TBAD_PHYPO  (P50258    ), TBAE_PHYPO  (P11480    ), 
TBAL3_HUMAN (A6NHL2    ), TBAL3_MOUSE (Q3UX10    ), TBAN_GUITH  (Q9SCC8    ), 
TBAN_PHYPO  (P04105    ), TBAT_ONCMY  (P18288    ), TBA_ASHGO   (Q752Y2    ), 
TBA_AVESA   (Q38771    ), TBA_BOMMO   (P52273    ), TBA_CANAX   (P87066    ), 
TBA_CHLVU   (Q9ZRJ4    ), TBA_COLOR   (Q9C413    ), TBA_DAUCA   (Q9FT36    ), 
TBA_DICDI   (P32255    ), TBA_DICPU   (A0AAL4    ), TBA_ENCCU   (Q8SRI6    ), 
TBA_ENCHE   (P92120    ), TBA_ENTDO   (Q06331    ), TBA_EUGGR   (P33625    ), 
TBA_EUPOC   (Q08114    ), TBA_EUPVA   (P28268    ), TBA_GIBZE   (Q5I2J3    ), 
TBA_HAECO   (P50719    ), TBA_LEPDS   (Q8WQ47    ), TBA_NEOCA   (Q71G51    ), 
TBA_NOTVI   (Q91060    ), TBA_ONCKE   (P30436    ), TBA_OXYGR   (P28287    ), 
TBA_PLAFK   (P14642    ), TBA_PLAYO   (P12543    ), TBA_PRUDU   (P33629    ), 
TBA_SORMK   (Q92335    ), TBA_TETPY   (P10872    ), TBA_TETTH   (P41351    ), 
TBA_TORMA   (P36220    ), TBA_TOXGO   (P10873    ), TBA_TRYBR   (P04106    ), 
TBA_TRYCR   (Q27352    ), TBA_TYRPU   (Q52PV9    ), TBA_WHEAT   (Q9ZRB7    ), 
TBA_XENLA   (P08537    ), TBA_XENTR   (Q28IX8    ), TBA_ZYMTR   (O94128    ), 
TBB1_ANEPH  (P33630    ), TBB1_ARATH  (P12411    ), TBB1_AVESA  (P25862    ), 
TBB1_BRUPA  (P18241    ), TBB1_CAEBR  (Q17299    ), TBB1_CAEEL  (P12456    ), 
TBB1_CHICK  (P09203    ), TBB1_CHOCR  (Q42480    ), TBB1_COLGL  (P32928    ), 
TBB1_COLGR  (P22013    ), TBB1_CYAPA  (Q9ZSW1    ), TBB1_DAUCA  (P20364    ), 
TBB1_DROME  (Q24560    ), TBB1_ECHMU  (Q9NFZ7    ), TBB1_ELEIN  (Q9ZPP0    ), 
TBB1_EMENI  (P10653    ), TBB1_GADMO  (Q9YHC3    ), TBB1_GEOCN  (P32924    ), 
TBB1_GLOMM  (Q27U48    ), TBB1_HOMAM  (Q25009    ), TBB1_HUMAN  (Q9H4B7    ), 
TBB1_HYPRU  (P31864    ), TBB1_HYPVI  (Q875L3    ), TBB1_LUPAL  (P37392    ), 
TBB1_MANSE  (O17449    ), TBB1_MOUSE  (A2AQ07    ), TBB1_NOTNE  (P36221    ), 
TBB1_ORYSJ  (Q43594    ), TBB1_PARTE  (P33188    ), TBB1_PEA    (P29500    ), 
TBB1_PHYPO  (P07436    ), TBB1_SOLTU  (P46263    ), TBB1_SOYBN  (P12459    ), 
TBB1_SUIBO  (Q6EVK8    ), TBB1_VOLCA  (P11482    ), TBB1_WHEAT  (Q9ZRB2    ), 
TBB2A_HUMAN (Q13885    ), TBB2A_MACFA (Q4R5B3    ), TBB2A_MOUSE (Q7TMM9    ), 
TBB2A_RAT   (P85108    ), TBB2B_BOVIN (Q6B856    ), TBB2B_HUMAN (Q9BVA1    ), 
TBB2B_MOUSE (Q9CWF2    ), TBB2B_RAT   (Q3KRE8    ), TBB2_ANEPH  (P33631    ), 
TBB2_ARATH  (Q56YW9    ), TBB2_CAEEL  (P52275    ), TBB2_CHICK  (P32882    ), 
TBB2_COLGL  (P40904    ), TBB2_COLGR  (P22014    ), TBB2_DAUCA  (Q39697    ), 
TBB2_DROER  (P83130    ), TBB2_DROHY  (P61858    ), TBB2_DROME  (P61857    ), 
TBB2_ECHMU  (Q9NFZ6    ), TBB2_ELEIN  (Q9ZPN9    ), TBB2_EMENI  (P10874    ), 
TBB2_ERYPI  (P40905    ), TBB2_GEOCN  (P32925    ), TBB2_HYPRU  (P31863    ), 
TBB2_HYPVI  (Q875L2    ), TBB2_LUPAL  (Q40106    ), TBB2_MAIZE  (P18026    ), 
TBB2_OOMCK  (P50260    ), TBB2_ORYSJ  (Q8H7U1    ), TBB2_PEA    (P29501    ), 
TBB2_PHYPO  (P12458    ), TBB2_SOLTU  (P46264    ), TBB2_SOYBN  (P12460    ), 
TBB2_SUIBO  (Q8J1R4    ), TBB2_WHEAT  (Q9ZRB1    ), TBB2_XENLA  (P13602    ), 
TBB3_ARATH  (Q9ASR0    ), TBB3_BOVIN  (Q2T9S0    ), TBB3_CHICK  (P09206    ), 
TBB3_DROME  (P08841    ), TBB3_ECHMU  (Q9NFZ5    ), TBB3_ELEIN  (Q9ZPN8    ), 
TBB3_GOSHI  (Q6VAF8    ), TBB3_HUMAN  (Q13509    ), TBB3_MACFA  (Q60HC2    ), 
TBB3_MAIZE  (Q43695    ), TBB3_MOUSE  (Q9ERD7    ), TBB3_OOMCK  (P50261    ), 
TBB3_ORYSJ  (Q40665    ), TBB3_PEA    (P29502    ), TBB3_RAT    (Q4QRB4    ), 
TBB3_SOYBN  (P28551    ), TBB3_WHEAT  (Q9ZRB0    ), TBB4A_BOVIN (Q3ZBU7    ), 
TBB4A_HUMAN (P04350    ), TBB4A_MACFA (Q4R4X8    ), TBB4A_MOUSE (Q9D6F9    ), 
TBB4B_BOVIN (Q3MHM5    ), TBB4B_HUMAN (P68371    ), TBB4B_MESAU (P86221    ), 
TBB4B_MOUSE (P68372    ), TBB4B_RAT   (Q6P9T8    ), TBB4_ARATH  (P24636    ), 
TBB4_CAEEL  (P41937    ), TBB4_CHICK  (P09652    ), TBB4_ELEIN  (Q9ZPN7    ), 
TBB4_MAIZE  (Q41782    ), TBB4_OOMCK  (P50262    ), TBB4_ORYSJ  (P45960    ), 
TBB4_WHEAT  (Q9ZRA9    ), TBB4_XENLA  (P30883    ), TBB5_ARATH  (P29513    ), 
TBB5_BOVIN  (Q2KJD0    ), TBB5_CHICK  (P09653    ), TBB5_CRIGR  (P69893    ), 
TBB5_ECTVR  (P30156    ), TBB5_GOSHI  (Q6VAF7    ), TBB5_HUMAN  (P07437    ), 
TBB5_MACMU  (P69895    ), TBB5_MAIZE  (Q43697    ), TBB5_MOUSE  (P99024    ), 
TBB5_ORYSJ  (P46265    ), TBB5_PANTR  (Q7JJU6    ), TBB5_PIG    (Q767L7    ), 
TBB5_PONAB  (Q5R943    ), TBB5_RAT    (P69897    ), TBB5_WHEAT  (Q9ZRA8    ), 
TBB5_XENLA  (Q91575    ), TBB5_XENTR  (Q6GLE7    ), TBB6_ARATH  (P29514    ), 
TBB6_BOVIN  (Q2HJ81    ), TBB6_CHICK  (P09207    ), TBB6_ECTVR  (P30157    ), 
TBB6_GOSHI  (Q6VAF6    ), TBB6_HUMAN  (Q9BUF5    ), TBB6_MAIZE  (Q41783    ), 
TBB6_MOUSE  (Q922F4    ), TBB6_ORYSJ  (Q76FS3    ), TBB7_ARATH  (P29515    ), 
TBB7_CHICK  (P09244    ), TBB7_GOSHI  (Q6VAF5    ), TBB7_MAIZE  (Q41784    ), 
TBB7_ORYSJ  (P37832    ), TBB8B_HUMAN (A6NNZ2    ), TBB8_ARATH  (P29516    ), 
TBB8_HUMAN  (Q3ZCM7    ), TBB8_MAIZE  (Q41785    ), TBB8_ORYSJ  (Q76FS2    ), 
TBB8_PANTR  (Q8WP14    ), TBB8_PAPHA  (Q8WP13    ), TBB9_ARATH  (P29517    ), 
TBB9_GOSHI  (Q6VAF4    ), TBBN_GUITH  (Q9SEV2    ), TBBP_DROME  (Q9VRX3    ), 
TBB_ACHKL   (P20802    ), TBB_ACRCH   (P41741    ), TBB_AJECA   (P41742    ), 
TBB_ASPFL   (P22012    ), TBB_ASPFU   (Q4WA70    ), TBB_ASPOR   (Q2U2U3    ), 
TBB_ASPPA   (Q00264    ), TBB_BABBO   (Q04709    ), TBB_BLUGH   (P16040    ), 
TBB_BOMMO   (P41385    ), TBB_BOTFU   (P53373    ), TBB_CANAX   (P10875    ), 
TBB_CERBT   (Q3KVN1    ), TBB_CHLIN   (O04386    ), TBB_CHLRE   (P04690    ), 
TBB_CICAR   (Q39445    ), TBB_COCHE   (Q4R9N3    ), TBB_COPC7   (P79008    ), 
TBB_DICDI   (P32256    ), TBB_DOTSE   (O42786    ), TBB_EIMTE   (Q27380    ), 
TBB_ENCCU   (Q8SS99    ), TBB_ENCHE   (Q24829    ), TBB_ENCIN   (Q9GSR5    ), 
TBB_ENTDO   (P35394    ), TBB_EPICN   (P33127    ), TBB_EPITY   (P17938    ), 
TBB_EUGGR   (P12457    ), TBB_EUPCR   (P20365    ), TBB_EUPFO   (Q9N2N6    ), 
TBB_EUPOC   (Q08115    ), TBB_GIAIN   (P05304    ), TBB_GIBFU   (P53374    ), 
TBB_GIBZE   (Q4HZS8    ), TBB_HALDI   (P41386    ), TBB_HORVU   (P93176    ), 
TBB_LEIME   (P21148    ), TBB_MELLI   (Q9HFQ3    ), TBB_METAN   (Q52NY7    ), 
TBB_NAEPR   (P34108    ), TBB_NEUCR   (P05220    ), TBB_ONCGI   (P41387    ), 
TBB_PARLI   (P11833    ), TBB_PENDI   (P53375    ), TBB_PESMI   (Q9UV72    ), 
TBB_PHANO   (P41799    ), TBB_PHYCI   (O59837    ), TBB_PIG     (P02554    ), 
TBB_PLAF7   (Q7KQL5    ), TBB_PLAFA   (P14140    ), TBB_PLAFK   (P14643    ), 
TBB_PLESA   (Q92268    ), TBB_PNECA   (P24637    ), TBB_POLAG   (P22852    ), 
TBB_PORPU   (P50259    ), TBB_PSEAM   (Q91240    ), TBB_PYRYE   (Q84TG9    ), 
TBB_RHYSE   (P53376    ), TBB_SCHCO   (P30668    ), TBB_SCHPO   (P05219    ), 
TBB_STYLE   (P11857    ), TBB_TETPY   (P10876    ), TBB_TETTH   (P41352    ), 
TBB_THAWE   (Q9LKI8    ), TBB_TOXGO   (P10878    ), TBB_TRIRU   (Q5UBX3    ), 
TBB_TRITR   (O44388    ), TBB_TRYBR   (P04107    ), TBB_TRYCR   (P08562    ), 
TBB_UNCNE   (Q86ZP5    ), TBB_UROFA   (Q96TU8    ), TBB_USTMA   (Q4P235    ), 
TBB_USTVI   (Q8WZE0    ), TBB_VENIN   (P41388    ), TBB_YEAST   (P02557    ), 
TBB_ZYMTR   (Q6QDC9    ), TBD_CANLF   (Q8HZV4    ), TBD_HUMAN   (Q9UJT1    ), 
TBD_MACFA   (Q4R7T7    ), TBD_MOUSE   (Q9R1K7    ), TBD_XENTR   (Q6DIM3    ), 
TBE_HUMAN   (Q9UJT0    ), TBE_MOUSE   (Q9D6T1    ), TBG1_ARATH  (P38557    ), 
TBG1_BOVIN  (Q0VCD2    ), TBG1_CANLF  (Q9GKK5    ), TBG1_DROME  (P23257    ), 
TBG1_EUPCR  (P54403    ), TBG1_EUPOC  (P34786    ), TBG1_HUMAN  (P23258    ), 
TBG1_MAIZE  (Q41807    ), TBG1_MOUSE  (P83887    ), TBG1_RAT    (P83888    ), 
TBG1_XENLA  (P23330    ), TBG2_ARATH  (P38558    ), TBG2_BOVIN  (Q32KM1    ), 
TBG2_DROME  (P42271    ), TBG2_EUPCR  (P54404    ), TBG2_EUPOC  (P90548    ), 
TBG2_HUMAN  (Q9NRH3    ), TBG2_MAIZE  (Q41808    ), TBG2_MOUSE  (Q8VCK3    ), 
TBG2_ORYSJ  (O49068    ), TBG3_MAIZE  (Q41874    ), TBG_ANEPH   (P34785    ), 
TBG_ASHGO   (Q75A43    ), TBG_CAEEL   (P34475    ), TBG_CANAX   (O93807    ), 
TBG_CANGA   (Q6FNU9    ), TBG_CHLRE   (Q39582    ), TBG_COCH5   (P40633    ), 
TBG_COPC7   (Q7Z9Z2    ), TBG_DICDI   (Q55AR3    ), TBG_EMENI   (P18695    ), 
TBG_ENCCU   (Q8SRD2    ), TBG_EUPAE   (P54402    ), TBG_NEUCR   (P53377    ), 
TBG_PHYPA   (Q9XFG3    ), TBG_PLAFO   (P34787    ), TBG_RETFI   (P54405    ), 
TBG_SCHJP   (Q9Y882    ), TBG_SCHPO   (P25295    ), TBG_USTVI   (P32348    ), 
TBG_YEAST   (P53378    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

CETZ2_HALVD (D4GTC1    ), CETZ6_HALVD (D4GU81    ), CETZ_METTP  (A0B5R2    ), 
TBA_AJECA   (P53371    ), TBB1_MAIZE  (P18025    ), TBB2_HOMAM  (Q94571    ), 
TBG_ENTHI   (P54401    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
13 sequences

TBA3_MESAU  (P86234    ), TBA4_MAIZE  (P33626    ), TBAA_PNECA  (Q07972    ), 
TBA_BLEJA   (Q08628    ), TBA_LEPSE   (P10489    ), TBA_LYTPI   (P02553    ), 
TBA_OCTVU   (P24635    ), TBA_PICAB   (P33628    ), TBA_POPEU   (P84549    ), 
TBB3_ANEPH  (P33632    ), TBB_LYMST   (P18699    ), TBB_LYTPI   (P02556    ), 
TBB_STRPU   (P18700    )
» more

UniProtKB/Swiss-Prot
False positive sequences
34 sequences

FOXD1_MOUSE (Q61345    ), FTSH_PARD8  (A6LD25    ), FTSZ1_ARATH (Q42545    ), 
GARE1_DANRE (Q7ZVU1    ), GATA6_MOUSE (Q61169    ), HCN4_HUMAN  (Q9Y3Q4    ), 
LRC4B_HUMAN (Q9NT99    ), ONEC3_HUMAN (O60422    ), OPLA_DICDI  (Q54NW6    ), 
PG46_MYCBO  (P0A691    ), PG46_MYCTO  (P9WIE6    ), PG46_MYCTU  (P9WIE7    ), 
PHOT2_ORYSJ (Q9ST27    ), PHYB_NOSS1  (Q9R6X3    ), PPR3F_HUMAN (Q6ZSY5    ), 
PRD15_HUMAN (P57071    ), PRDM8_HUMAN (Q9NQV8    ), S39A7_CANLF (Q5TJF6    ), 
SIR2_CANAL  (O59923    ), SPL14_ORYSJ (Q7EXZ2    ), TBC2_CHLRE  (Q8VXP3    ), 
TBX20_DANRE (Q9I9K7    ), TRBB_RHIRD  (P54907    ), U119A_MOUSE (Q9Z2R6    ), 
UBN2_BOVIN  (E1B7L7    ), UBN2_HUMAN  (Q6ZU65    ), UBN2_MOUSE  (Q80WC1    ), 
UBN2_RAT    (D4A666    ), URK_BACHD   (Q9KDD8    ), URK_HALSA   (Q9HQC9    ), 
VG_DROME    (Q26366    ), WAG31_MYCLE (P46815    ), Y0387_DICDI (Q54G58    ), 
Y781_METJA  (Q58191    )
» more


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