PROSITE entry PS00234
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General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS00234 |
| Entry name [info] | GAS_VESICLE_A_1 |
| Accession [info] | PS00234 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00207 |
Name and characterization of the entry
| Description [info] | Gas vesicles protein GVPa signature 1. |
| Pattern [info] |
[LIVM]-x-[DE]-[LIVMFYT]-[LIVM]-[DE]-x-[LIVM](2)-[DKR](2)-G-x-[LIVMA]- [LIVM]. |
Numerical results [info]
| Total number of hits | 47 in 47 different sequences |
| Number of true positive hits | 47 in 47 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 95.92 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
47 sequences
GVPA1_HALSA (P08958), GVPA1_PRIMG (O68680), GVPA1_STRCO (Q9ZC13), GVPA2_HALSA (P08959), GVPA2_PRIMG (O68677), GVPA2_STRCO (Q9RJB4), GVPA_ANCAQ (Q9RH31), GVPA_BRASO (A4YMQ7), GVPA_CERS1 (A3PPT5), GVPA_CERS4 (Q3IWB1), GVPA_CERSK (B9KU72), GVPA_DACSA (Q9R5H8), GVPA_DOLFA (P10397), GVPA_HALMT (P23761), GVPA_HALVU (O33397), GVPA_HALWD (Q18JA1), GVPA_KORVE (Q1INZ5), GVPA_MICAN (B0JPK6), GVPA_MICBC (P08412), GVPA_MICDP (P07060), GVPA_MYCSJ (A3PZ32), GVPA_MYCSK (A1UFH1), GVPA_MYCSS (Q1B9J2), GVPA_NOSP7 (B2J663), GVPA_NOSS1 (Q8XFU1), GVPA_PLAAG (P0A3G0), GVPA_PLARU (P0A3G1), GVPA_PSEGP (P22453), GVPA_SPICC (P80997), GVPA_STRX0 (A0A1Q5LR04), GVPA_SYNJA (Q2JW39), GVPA_SYNJB (Q2JKK1), GVPA_THIPN (P80998), GVPJ1_HALSA (P24374), GVPJ1_STRCO (Q9ZC08), GVPJ2_HALSA (P33956), GVPJ2_STRCO (Q9RJA9), GVPJ_DOLFA (P55147), GVPJ_HALMT (Q02235), GVPJ_NOSS1 (Q8YUT1), GVPJ_PRIMG (O68669), GVPJ_PSEGP (Q9AKS3), GVPJ_STRX0 (A0A1Q5LRA3), GVPM1_HALSA (P24377), GVPM2_HALSA (P33957), GVPM_HALMT (Q02238), GVPS_PRIMG (O68671)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
GVPA_GEOUR (A5G5E4), GVPS_STRX0 (A0A1Q5LQW7) |
| PDB [Detailed view] |
1 PDB
8GBS |