PROSITE entry PS00238
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General information about the entry
Entry name [info] | OPSIN |
Accession [info] | PS00238 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00211 |
Name and characterization of the entry
Description [info] | Visual pigments (opsins) retinal binding site. |
Pattern [info] |
[LIVMFWAC]-[PSGAC]-x-{G}-x-[SAC]-K-[STALIMR]-[GSACPNV]-[STACP]-x(2)- [DENF]-[AP]-x(2)-[IY]. |
Numerical results [info]
Total number of hits | 231 in 230 different sequences |
Number of true positive hits | 219 in 218 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 12 in 12 different sequences |
Number of false negative sequences | 2 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 94.81 % |
Recall (true positives / (true positives + false negatives)) | 99.10 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 2 |
Site [info] | retinal at position 7 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
218 sequences
OP1S1_DANRE (Q9W6A9), OP1S2_DANRE (Q9W6A8), OPN3_HUMAN (Q9H1Y3), OPN3_MOUSE (Q9WUK7), OPN4A_DANRE (Q2KNE5), OPN4A_GADMO (Q804X9), OPN4B_GADMO (Q804Q2), OPN4B_XENLA (O57422), OPN4L_DANRE (Q1JPS6), OPN4_FELCA (Q5YKK9), OPN4_HUMAN (Q9UHM6), OPN4_MOUSE (Q9QXZ9), OPN4_PHOSU (Q5XXP2), OPN4_PODSI (Q4U4D2), OPN4_RAT(Q8R456), OPN4_RUTRU (Q6XL69), OPN5_HUMAN (Q6U736), OPN5_MOUSE (Q6VZZ7), OPS1_CALVI (P22269), OPS1_DROME (P06002), OPS1_DROPS (P28678), OPS1_MANSE (O02464), OPS1_SCHGR (Q94741), OPS2_DROME (P08099), OPS2_DROPS (P28679), OPS2_SCHGR (Q26495), OPS3_DROME (P04950), OPS3_DROPS (P28680), OPS4_DROME (P08255), OPS4_DROPS (P29404), OPS4_DROVI (P17646), OPS5_DROME (P91657), OPS6_DROME (O01668), OPSB_ANOCA (P51471), OPSB_APIME (P90680), OPSB_BOVIN (P51490), OPSB_CARAU (P32310), OPSB_CHICK (P28682), OPSB_CONCO (O13227), OPSB_GEKGE (P35357), OPSB_HUMAN (P03999), OPSB_MOUSE (P51491), OPSB_ORYLA (P87365), OPSB_PANPA (P60573), OPSB_PANTR (P60015), OPSB_PSAFA (P51472), OPSB_RAT(Q63652), OPSB_SAIBB (O13092), OPSC1_HEMSA (Q25157), OPSC2_HEMSA (Q25158), OPSCE_BOMMO (Q95YI3), OPSD1_ANGAN (Q90214), OPSD1_MIZYE (O15973), OPSD2_ANGAN (Q90215), OPSD2_MIZYE (O15974), OPSD_ABYKO (O42294), OPSD_ALLMI (P52202), OPSD_ALLSU (Q17094), OPSD_AMBTI (Q90245), OPSD_ANOCA (P41591), OPSD_APIME (Q17053), OPSD_ATHBO (Q9YGZ1), OPSD_BATMU (O42300), OPSD_BATNI (O42301), OPSD_BOVIN (P02699), OPSD_BUFBU (P56514), OPSD_CALPD (Q6W3E1), OPSD_CAMAT (Q17292), OPSD_CAMHU (O18312), OPSD_CAMMA (O18315), OPSD_CAMSC (O16018), OPSD_CANLF (P32308), OPSD_CARAU (P32309), OPSD_CATBO (Q17296), OPSD_CHEAU (Q9YGZ6), OPSD_CHELB (Q9YGZ8), OPSD_CHESA (Q9YGZ7), OPSD_CHICK (P22328), OPSD_COMDY (O42327), OPSD_CORAU (Q90305), OPSD_COTBO (O42307), OPSD_COTGR (O42328), OPSD_COTIN (O42330), OPSD_CRIGR (P28681), OPSD_CYPCA (P51488), OPSD_DANRE (P35359), OPSD_DELDE (O62791), OPSD_DICLA (Q9YGZ4), OPSD_DIPAN (Q9YH05), OPSD_DIPVU (Q9YH04), OPSD_ENTDO (P09241), OPSD_FAXVI (O16019), OPSD_FELCA (Q95KU1), OPSD_GALML (O93441), OPSD_GAMAF (P79756), OPSD_GLOME (O62792), OPSD_GOBNI (Q9YGZ2), OPSD_HUMAN (P08100), OPSD_ICTPU (O42268), OPSD_LACLU (O16017), OPSD_LEOKE (Q90373), OPSD_LETCA (P22671), OPSD_LEUER (P79863), OPSD_LIMBE (O42427), OPSD_LIMPA (O42431), OPSD_LITCT (P51470), OPSD_LITMO (Q9YH00), OPSD_LITPI (P31355), OPSD_LOLFO (P24603), OPSD_LOXAF (Q68J47), OPSD_MACFA (Q28886), OPSD_MESBI (O62793), OPSD_MOUSE (P15409), OPSD_MUGCE (Q9YGZ9), OPSD_MULSU (Q9YH01), OPSD_MYRBE (P79798), OPSD_MYRVI (P79807), OPSD_NEOAR (P79808), OPSD_NEOAU (P79809), OPSD_NEOSA (P79812), OPSD_ORCAU (O18481), OPSD_ORYLA (P87369), OPSD_OTOCR (Q769E8), OPSD_PAGGO (O62795), OPSD_PARKN (O42452), OPSD_PETMA (Q98980), OPSD_PHOVI (O62794), OPSD_PIG(O18766), OPSD_POERE (P79848), OPSD_POMMI (P35403), OPSD_PROCL (P35356), OPSD_PROJE (O42451), OPSD_PROML (O16020), OPSD_PROOR (O18485), OPSD_PROSE (O18486), OPSD_PSAFA (P41590), OPSD_RABIT (P49912), OPSD_RANTE (P56516), OPSD_RAT(P51489), OPSD_RHIMB (P56515), OPSD_SALPV (Q9YGZ3), OPSD_SARDI (P79898), OPSD_SARMI (P79901), OPSD_SARPI (Q9YGZ0), OPSD_SARPU (P79902), OPSD_SARSL (Q9YH03), OPSD_SARSP (P79903), OPSD_SARTI (P79911), OPSD_SARXA (P79914), OPSD_SCYCA (O93459), OPSD_SEPOF (O16005), OPSD_SHEEP (P02700), OPSD_SMICR (Q8HY69), OPSD_SOLSO (Q9YGZ5), OPSD_SPAAU (Q9YH02), OPSD_SPHSP (P35362), OPSD_TAUBU (O42466), OPSD_TETNG (Q9DGG4), OPSD_TODPA (P31356), OPSD_TRIMA (O62796), OPSD_TURTR (O62798), OPSD_XENLA (P29403), OPSD_ZEUFA (O42604), OPSD_ZOSOP (Q9YGY9), OPSG1_CARAU (P32311), OPSG1_DANRE (Q9W6A5), OPSG1_PSAFA (P22330), OPSG2_CARAU (P32312), OPSG2_DANRE (Q8AYM8), OPSG2_HUMAN (P0DN77), OPSG2_PSAFA (P22331), OPSG3_DANRE (Q8AYM7), OPSG3_HUMAN (P0DN78), OPSG3_PSAFA (P51474), OPSG4_DANRE (Q9W6A6), OPSG_CAVPO (Q9R024), OPSG_CHICK (P28683), OPSG_GEKGE (P35358), OPSG_HUMAN (P04001), OPSG_MOUSE (O35599), OPSG_ORYLA (P87366), OPSG_RABIT (O18910), OPSG_RAT(O35476), OPSG_SCICA (O35478), OPSL_CALJA (P34989), OPSL_LIMPO (P35360), OPSO_LIMPO (P35361), OPSO_RUTRU (Q7T3Q7), OPSO_SALSA (O13018), OPSP_CHICK (P51475), OPSP_COLLI (P51476), OPSP_ICTPU (O42266), OPSP_PETMA (O42490), OPSR1_DANRE (Q9W6A7), OPSR2_DANRE (Q8AYN0), OPSR_ANOCA (P41592), OPSR_BOVIN (Q9BGI7), OPSR_CANLF (O18914), OPSR_CAPHI (Q95170), OPSR_CARAU (P32313), OPSR_CHICK (P22329), OPSR_FELCA (O18913), OPSR_HORSE (O18912), OPSR_HUMAN (P04000), OPSR_ORYLA (P87367), OPSR_PSAFA (P22332), OPSR_XENLA (O12948), OPSUV_APIME (O61303), OPSUV_CARAU (Q90309), OPSUV_MELUD (O57605), OPSV_CHICK (P28684), OPSV_ORYLA (P87368), OPSV_XENLA (P51473), OPSX_HUMAN (O14718), OPSX_MOUSE (O35214), REIS_TODPA (P23820), RGR_BOVIN (P47803), RGR_HUMAN (P47804)» more
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UniProtKB/Swiss-Prot False negative sequences |
2 sequences
OPN4_BRABE (Q4R1I4), RGR_MOUSE (Q9Z2B3) |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
OPS3_DROVI (P17645), OPSG_ODOVI (O18911) |
UniProtKB/Swiss-Prot False positive sequences |
12 sequences
EFTS_ACISJ (A1W917), GPRL1_HUMAN (Q6UWM5), ICMS_LEGPH (Q5ZYD0), OADB_PASMU (Q9CL24), POLSF_CHIKS (P0DOK1), POLS_CHIKN (Q5WQY5), POLS_CHIKS (Q8JUX5), POLS_ONNVG (P22056), POLS_ONNVI (O90371), POLS_ONNVS (O90369), POL_HTL1L (P0C211), RBP17_MOUSE (Q99NF8)» more |
PDB [Detailed view] |
68 PDB
1F88; 1GZM; 1HZX; 1JFP; 1L9H; 1LN6; 1U19; 2G87; 2HPY; 2I35; 2I36; 2I37; 2J4Y; 2PED; 2X72; 2Z73; 2ZIY; 3AYM; 3AYN; 3C9L; 3C9M; 3CAP; 3DQB; 3OAX; 3PQR; 3PXO; 4A4M; 4BEY; 4BEZ; 4J4Q; 4PXF; 4WW3; 4X1H; 4ZWJ; 5DGY; 5DYS; 5EN0; 5TE3; 5TE5; 5W0P; 5WKT; 6CMO; 6FK6; 6FK7; 6FK8; 6FK9; 6FKA; 6FKB; 6FKC; 6FKD; 6FUF; 6NWE; 6OFJ; 6OY9; 6OYA; 6PEL; 6PGS; 6PH7; 6QNO; 7MT8; 7MT9; 7MTA; 7MTB; 7ZBC; 7ZBE; 8A6C; 8A6D; 8A6E » more |