PROSITE entry PS00275
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General information about the entry
Entry name [info] | SHIGA_RICIN |
Accession [info] | PS00275 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00248 |
Name and characterization of the entry
Description [info] | Shiga/ricin ribosomal inactivating toxins active site signature. |
Pattern [info] |
[LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]- x(2)-[LIVMF]. |
Numerical results [info]
Total number of hits | 59 in 59 different sequences |
Number of true positive hits | 57 in 57 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 12 |
Precision (true positives / (true positives + false positives)) | 96.61 % |
Recall (true positives / (true positives + false negatives)) | 89.06 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | active_site at position 5 |
Site [info] | active_site at position 8 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
57 sequences
ABRA_ABRPR (P11140), ABRB_ABRPR (Q06077), ABRC_ABRPR (P28590), ABRD_ABRPR (Q06076), AGGL_ABRPR (Q9M6E9), AGGL_RICCO (P06750), ALB3_MAIZE (P10593), JI60_HORVU (Q00531), NIGB_SAMNI (P33183), RICI_RICCO (P02879), RIP0_DIACA (P24476), RIP1_BRYDI (P33185), RIP1_CUCFI (Q9FRX4), RIP1_GYNPE (Q5F0I3), RIP1_HORVU (P22244), RIP1_MOMCH (P16094), RIP1_PHYAM (P10297), RIP1_SAMNI (P93543), RIP2_BRYDI (P98184), RIP2_HORVU (P04399), RIP2_MOMBA (P29339), RIP2_PHYAM (Q40772), RIP2_PHYDI (P34967), RIP2_SAPOF (P27559), RIP3_MAIZE (P25891), RIP3_MOMCH (P24817), RIP3_SAPOF (P27560), RIP5_SAPOF (Q41389), RIP6_SAPOF (P20656), RIP7_SAPOF (Q41391), RIP9_MAIZE (P25892), RIPA_LUFAE (Q00465), RIPA_PHYAM (Q03464), RIPB_LUFAE (P22851), RIPD2_PHYDI (P85208), RIPG_SURMU (P33186), RIPL1_PHYDI (P84853), RIPL2_PHYDI (P84854), RIPLY_SILCH (P85101), RIPM_POLML (Q9M654), RIPP_MIRJA (P21326), RIPS_PHYAM (P23339), RIPS_TRIKI (P24478), RIPT_POLML (Q9M653), RIPT_TRIKI (P09989), RIPX_MAIZE (P28522), RIP_CUCMO (P84531), RIP_LUFAC (P84530), SNAIB_SAMNI (Q41358), SNAIF_SAMNI (O22415), STXA_BP788 (Q779K4), STXA_BP933 (P09385), STXA_BPH19 (P08026), STXA_BPH30 (P10149), STXA_SHIDS (Q32GM1), STXA_SHIDY (Q9FBI2), VOLK_ADEVO (Q70US9)» more
|
UniProtKB/Swiss-Prot False negative sequences |
7 sequences
ML1_VISAL (P81446), ML2_VISAL (Q6H266), ML3_VISAL (P82683), RIP1_TRIAN (P56626), RIP4_PHYHE (Q6EH50), RIP9_SAPOF (Q7M1Z2), RIP_DRIMA (P84786)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
12 sequences
ARALA_ARAEL (P83572), LECA_IRIHO (P36230), RIP1_SAPOF (P98185), RIP2_DIACA (P24477), RIP2_TRIKI (P23029), RIP3_SURMU (P24475), RIP4_SAPOF (P27561), RIPD1_PHYDI (P86144), RIPK_TRIKI (P16093), RIPS_MOMCO (P20655), RIPX_CUCPE (P80750), RIP_SIRGR (P83323)» more |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
RIP1_GYPVA (Q7M1L6), RIP2_GYPVA (C0HM39) |
PDB [Detailed view] |
170 PDB
1ABR; 1AHA; 1AHB; 1AHC; 1APA; 1BR5; 1BR6; 1BRY; 1CF5; 1D6A; 1D8V; 1DM0; 1F8Q; 1GIK; 1GIS; 1GIU; 1IFS; 1IFT; 1IFU; 1IL3; 1IL4; 1IL5; 1IL9; 1J1M; 1J1Q; 1J1R; 1J1S; 1J4G; 1LLN; 1LP8; 1LPC; 1LPD; 1MOM; 1MRG; 1MRH; 1MRI; 1MRJ; 1MRK; 1NIO; 1PAF; 1PAG; 1QCG; 1QCI; 1QCJ; 1QD2; 1QI7; 1R4P; 1R4Q; 1RL0; 1RTC; 1RZO; 1TCS; 1UQ4; 1UQ5; 2AAI; 2G5X; 2GA4; 2JDL; 2JJR; 2K6H; 2OQA; 2P8N; 2PJO; 2PQG; 2PQI; 2PQJ; 2Q3N; 2QES; 2QET; 2R2X; 2R3D; 2VS6; 2Z4U; 2Z53; 2ZR1; 3BWH; 3EJ5; 3H5K; 3HIO; 3KTZ; 3KU0; 3LC9; 3LE7; 3MK9; 3PX8; 3PX9; 3RTI; 3RTJ; 3SRP; 4ESI; 4FB9; 4FBA; 4FBB; 4FBC; 4FBH; 4HUO; 4HUP; 4HV3; 4HV7; 4IMV; 4KUC; 4LGP; 4LGR; 4LGS; 4LHJ; 4LHQ; 4MX1; 4MX5; 4Q2V; 4YP2; 4Z9K; 5BOZ; 5CF9; 5DDZ; 5E1H; 5GU4; 5J56; 5J57; 5SV3; 5U4L; 5U4M; 5Z37; 5Z3I; 5Z3J; 6CWG; 6LOQ; 6LOR; 6LOV; 6LOW; 6LOY; 6LOZ; 6LP0; 6OBC; 6OBE; 6OBG; 6OBM; 6OBO; 6OCA; 6OCD; 6URW; 6URX; 6URY; 7KBI; 7KBK; 7KC9; 7KD0; 7KD2; 7KDM; 7KDU; 7MLN; 7MLO; 7MLP; 7MLT; 7TGF; 7TGI; 7TH2; 7TH3; 7UJJ; 7XZS; 7XZT; 7XZU; 7XZW; 7Y02; 7Y03; 7Y05; 7Y06; 7Y07; 7Y08; 7Y4K; 7Y4M » more |