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Entry: PS00289 |
Entry name [info] | PTX_1 |
Accession [info] | PS00289 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00261 |
Description [info] | Pentraxin domain signature. |
Pattern [info] |
H-x-C-x-[ST]-W-x-[ST]. |
Total number of hits | 34 in 34 different sequences |
Number of true positive hits | 32 in 32 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 21 |
Number of 'partial' sequences | 10 |
Precision (true positives / (true positives + false positives)) | 94.12 % |
Recall (true positives / (true positives + false negatives)) | 60.38 % |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Site [info] | disulfide at position 3 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
32 sequences
CRP1_LIMPO (P06205 ), CRP3_LIMPO (P06207 ), CRP4_LIMPO (P06206 ), CRP_CAVPO (P49254 ), CRP_HUMAN (P02741 ), CRP_MESAU (P49262 ), CRP_MOUSE (P14847 ), CRP_PIG (O19062 ), CRP_RABIT (P02742 ), CRP_RAT (P48199 ), CRP_XENLA (Q07203 ), FP_CRIMI (P15697 ), MPTX_BOVIN (Q3T166 ), NPTX1_HUMAN (Q15818 ), NPTX1_MOUSE (Q62443 ), NPTX1_RAT (P47971 ), NPTX2_CAVPO (P47970 ), NPTX2_HUMAN (P47972 ), NPTX2_MOUSE (O70340 ), NPTX2_RAT (P97738 ), NPTXR_MOUSE (Q99J85 ), PTX3_BOVIN (Q0VCG9 ), PTX3_HUMAN (P26022 ), PTX3_MOUSE (P48759 ), PXN1_XENLA (P49263 ), SAMP_BOVIN (Q3T004 ), SAMP_CAVPO (P49255 ), SAMP_HUMAN (P02743 ), SAMP_MESAU (P07629 ), SAMP_MOUSE (P12246 ), SAMP_PIG (O19063 ), SAMP_RAT (P23680 )» more
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UniProtKB/Swiss-Prot False negative sequences |
21 sequences
AGRD1_BOVIN (A6QLU6 ), AGRD1_HUMAN (Q6QNK2 ), AGRD1_MOUSE (Q80T32 ), AGRD2_HUMAN (Q7Z7M1 ), AGRG4_HUMAN (Q8IZF6 ), AGRG4_MOUSE (B7ZCC9 ), AGRG6_DANRE (C6KFA3 ), AGRG6_HUMAN (Q86SQ4 ), AGRG6_MOUSE (Q6F3F9 ), CRP_DANRE (Q0IIP8 ), JELT_LEPLA (Q9PTT2 ), MPTX_HUMAN (A8MV57 ), MPTX_MOUSE (Q8R1M8 ), MPTX_RAT (Q6TA48 ), NPTXR_HUMAN (O95502 ), NPTXR_RAT (O35764 ), PTX4_HUMAN (Q96A99 ), PTX4_MOUSE (Q6RUU0 ), SVEP1_HUMAN (Q4LDE5 ), SVEP1_MOUSE (A2AVA0 ), SVEP1_RAT (P0C6B8 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
10 sequences
CRP1_GADMO (P86688 ), CRP2_GADMO (P86689 ), CRP_MUSCA (P19094 ), CRP_PLEPL (P12245 ), LIMU_LIMPO (P02744 ), SAMP_ANALU (P86694 ), SAMP_HIPHI (P86695 ), SAMP_MUSCA (P19095 ), SAMP_PLEPL (P20677 ), SAMP_SALSA (P86693 )» more |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
CCNJL_HUMAN (Q8IV13 ), CRK23_ARATH (O65482 ) |
PDB [Detailed view] |
29 PDB
1B09; 1GNH; 1GYK; 1LGN; 1LJ7; 1SAC; 2A3W; 2A3X; 2A3Y; 2W08; 3D5O; 3KQR; 3L2Y; 3PVN; 3PVO; 4AVS; 4AVT; 4AVV; 4AYU; 6YPE; 7PK9; 7PKB; 7PKD; 7PKE; 7PKF; 7PKG; 7PKH; 7TBA; 7ZL1 » more |