PROSITE entry PS00289
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General information about the entry
Entry name [info] | PTX_1 |
Accession [info] | PS00289 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00261 |
Name and characterization of the entry
Description [info] | Pentraxin domain signature. |
Pattern [info] |
H-x-C-x-[ST]-W-x-[ST]. |
Numerical results [info]
Total number of hits | 34 in 34 different sequences |
Number of true positive hits | 32 in 32 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 21 |
Number of 'partial' sequences | 10 |
Precision (true positives / (true positives + false positives)) | 94.12 % |
Recall (true positives / (true positives + false negatives)) | 60.38 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Site [info] | disulfide at position 3 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
32 sequences
CRP1_LIMPO (P06205), CRP3_LIMPO (P06207), CRP4_LIMPO (P06206), CRP_CAVPO (P49254), CRP_HUMAN (P02741), CRP_MESAU (P49262), CRP_MOUSE (P14847), CRP_PIG (O19062), CRP_RABIT (P02742), CRP_RAT (P48199), CRP_XENLA (Q07203), FP_CRIMI(P15697), MPTX_BOVIN (Q3T166), NPTX1_HUMAN (Q15818), NPTX1_MOUSE (Q62443), NPTX1_RAT (P47971), NPTX2_CAVPO (P47970), NPTX2_HUMAN (P47972), NPTX2_MOUSE (O70340), NPTX2_RAT (P97738), NPTXR_MOUSE (Q99J85), PTX3_BOVIN (Q0VCG9), PTX3_HUMAN (P26022), PTX3_MOUSE (P48759), PXN1_XENLA (P49263), SAMP_BOVIN (Q3T004), SAMP_CAVPO (P49255), SAMP_HUMAN (P02743), SAMP_MESAU (P07629), SAMP_MOUSE (P12246), SAMP_PIG(O19063), SAMP_RAT(P23680)» more
|
UniProtKB/Swiss-Prot False negative sequences |
21 sequences
AGRD1_BOVIN (A6QLU6), AGRD1_HUMAN (Q6QNK2), AGRD1_MOUSE (Q80T32), AGRD2_HUMAN (Q7Z7M1), AGRG4_HUMAN (Q8IZF6), AGRG4_MOUSE (B7ZCC9), AGRG6_DANRE (C6KFA3), AGRG6_HUMAN (Q86SQ4), AGRG6_MOUSE (Q6F3F9), CRP_DANRE (Q0IIP8), JELT_LEPLA (Q9PTT2), MPTX_HUMAN (A8MV57), MPTX_MOUSE (Q8R1M8), MPTX_RAT(Q6TA48), NPTXR_HUMAN (O95502), NPTXR_RAT (O35764), PTX4_HUMAN (Q96A99), PTX4_MOUSE (Q6RUU0), SVEP1_HUMAN (Q4LDE5), SVEP1_MOUSE (A2AVA0), SVEP1_RAT (P0C6B8)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
10 sequences
CRP1_GADMO (P86688), CRP2_GADMO (P86689), CRP_MUSCA (P19094), CRP_PLEPL (P12245), LIMU_LIMPO (P02744), SAMP_ANALU (P86694), SAMP_HIPHI (P86695), SAMP_MUSCA (P19095), SAMP_PLEPL (P20677), SAMP_SALSA (P86693)» more |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
CCNJL_HUMAN (Q8IV13), CRK23_ARATH (O65482) |
PDB [Detailed view] |
29 PDB
1B09; 1GNH; 1GYK; 1LGN; 1LJ7; 1SAC; 2A3W; 2A3X; 2A3Y; 2W08; 3D5O; 3KQR; 3L2Y; 3PVN; 3PVO; 4AVS; 4AVT; 4AVV; 4AYU; 6YPE; 7PK9; 7PKB; 7PKD; 7PKE; 7PKF; 7PKG; 7PKH; 7TBA; 7ZL1 » more |