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Entry: PS00289

General information about the entry

Entry name [info] PTX_1
Accession [info] PS00289
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1997 DATA UPDATE;
22-FEB-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00261

Name and characterization of the entry

Description [info] Pentraxin domain signature.
Pattern [info] 
H-x-C-x-[ST]-W-x-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_01 which contains 569'213 sequence entries.


Total number of hits 34 in 34 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 21
Number of 'partial' sequences 10
Precision (true positives / (true positives + false positives)) 94.12 %
Recall (true positives / (true positives + false negatives)) 60.38 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 32 sequences 

CRP1_LIMPO  (P06205    ), CRP3_LIMPO  (P06207    ), CRP4_LIMPO  (P06206    ), 

CRP_CAVPO   (P49254    ), CRP_HUMAN   (P02741    ), CRP_MESAU   (P49262    ), 
CRP_MOUSE   (P14847    ), CRP_PIG     (O19062    ), CRP_RABIT   (P02742    ), 
CRP_RAT     (P48199    ), CRP_XENLA   (Q07203    ), FP_CRIMI    (P15697    ), 
MPTX_BOVIN  (Q3T166    ), NPTX1_HUMAN (Q15818    ), NPTX1_MOUSE (Q62443    ), 
NPTX1_RAT   (P47971    ), NPTX2_CAVPO (P47970    ), NPTX2_HUMAN (P47972    ), 
NPTX2_MOUSE (O70340    ), NPTX2_RAT   (P97738    ), NPTXR_MOUSE (Q99J85    ), 
PTX3_BOVIN  (Q0VCG9    ), PTX3_HUMAN  (P26022    ), PTX3_MOUSE  (P48759    ), 
PXN1_XENLA  (P49263    ), SAMP_BOVIN  (Q3T004    ), SAMP_CAVPO  (P49255    ), 
SAMP_HUMAN  (P02743    ), SAMP_MESAU  (P07629    ), SAMP_MOUSE  (P12246    ), 
SAMP_PIG    (O19063    ), SAMP_RAT    (P23680    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 21 sequences 

AGRD1_BOVIN (A6QLU6    ), AGRD1_HUMAN (Q6QNK2    ), AGRD1_MOUSE (Q80T32    ), 

AGRD2_HUMAN (Q7Z7M1    ), AGRG4_HUMAN (Q8IZF6    ), AGRG4_MOUSE (B7ZCC9    ), 
AGRG6_DANRE (C6KFA3    ), AGRG6_HUMAN (Q86SQ4    ), AGRG6_MOUSE (Q6F3F9    ), 
CRP_DANRE   (Q0IIP8    ), JELT_LEPLA  (Q9PTT2    ), MPTX_HUMAN  (A8MV57    ), 
MPTX_MOUSE  (Q8R1M8    ), MPTX_RAT    (Q6TA48    ), NPTXR_HUMAN (O95502    ), 
NPTXR_RAT   (O35764    ), PTX4_HUMAN  (Q96A99    ), PTX4_MOUSE  (Q6RUU0    ), 
SVEP1_HUMAN (Q4LDE5    ), SVEP1_MOUSE (A2AVA0    ), SVEP1_RAT   (P0C6B8    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 10 sequences 

CRP1_GADMO  (P86688    ), CRP2_GADMO  (P86689    ), CRP_MUSCA   (P19094    ), 

CRP_PLEPL   (P12245    ), LIMU_LIMPO  (P02744    ), SAMP_ANALU  (P86694    ), 
SAMP_HIPHI  (P86695    ), SAMP_MUSCA  (P19095    ), SAMP_PLEPL  (P20677    ), 
SAMP_SALSA  (P86693    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 2 sequences 

CCNJL_HUMAN (Q8IV13    ), CRK23_ARATH (O65482    )


				
	

	

		PDB
[Detailed view]		
		
			29 PDB
			


			1B09; 1GNH; 1GYK; 1LGN; 1LJ7; 1SAC; 2A3W; 2A3X; 2A3Y; 2W08; 3D5O; 3KQR; 
			
				3L2Y; 3PVN; 3PVO; 4AVS; 4AVT; 4AVV; 4AYU; 6YPE; 7PK9; 7PKB; 7PKD; 7PKE; 
				7PKF; 7PKG; 7PKH; 7TBA; 7ZL1
			
			

			» more

				
	





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