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| Entry: PS00300 |
General information about the entry
| Entry name [info] | SRP54 |
| Accession [info] | PS00300 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00272 |
Name and characterization of the entry
| Description [info] | SRP54-type proteins GTP-binding domain signature. |
| Pattern [info] |
P-[LIVM]-x-[FYL]-[LIVMAT]-[GS]-{Q}-[GS]-[EQ]-x-{K}-x(2)-[LIVMF].
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Numerical results [info]
| Total number of hits | 135 in 135 different sequences |
| Number of true positive hits | 118 in 118 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 17 in 17 different sequences |
| Number of false negative sequences | 45 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 87.41 % |
| Recall (true positives / (true positives + false negatives)) | 72.39 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
118 sequences
CFTSY_ARATH (O80842 ), FTSY_AGRFC (A9CHH2 ), FTSY_AQUAE (O67066 ), FTSY_BACSU (P51835 ), FTSY_BIFLO (Q8G736 ), FTSY_BUCAI (P57137 ), FTSY_BUCAP (Q8KA77 ), FTSY_BUCBP (Q89B28 ), FTSY_DEIRA (Q9RS67 ), FTSY_DESVH (Q726P7 ), FTSY_ECOLI (P10121 ), FTSY_HAEIN (P44870 ), FTSY_HALVD (D4GYW6 ), FTSY_HELPJ (Q9ZL80 ), FTSY_HELPY (O25458 ), FTSY_METJA (Q57739 ), FTSY_MYCBO (P66843 ), FTSY_MYCGE (P47539 ), FTSY_MYCLE (O33010 ), FTSY_MYCPN (P75362 ), FTSY_MYCTO (P9WGD8 ), FTSY_MYCTU (P9WGD9 ), FTSY_NEIGO (P14929 ), FTSY_NEIMA (P57010 ), FTSY_NEIMB (P57011 ), FTSY_NEIMC (O30391 ), FTSY_RICBR (Q1RKK5 ), FTSY_RICCN (Q92GB8 ), FTSY_RICFE (Q4UK46 ), FTSY_RICPR (O05948 ), FTSY_RICTY (Q68VX4 ), FTSY_STRMU (Q8CWX8 ), FTSY_SULAC (P27414 ), FTSY_SYNY3 (P73930 ), FTSY_THEAQ (P83749 ), SR541_ARATH (P37106 ), SR541_HORVU (P49968 ), SR541_SOLLC (P49971 ), SR542_ARATH (P49966 ), SR542_HORVU (P49969 ), SR542_SOLLC (P49972 ), SR543_ARATH (P49967 ), SR543_HORVU (P49970 ), SR54C_ARATH (P37107 ), SRP54_AQUAE (O67615 ), SRP54_ARCFU (O29633 ), SRP54_ASPNG (Q00179 ), SRP54_BACSU (P37105 ), SRP54_BOVIN (Q2T9U1 ), SRP54_BUCAI (P57473 ), SRP54_BUCAP (Q8K9F7 ), SRP54_BUCBP (Q89AE4 ), SRP54_CANAX (O42816 ), SRP54_CANLF (P61010 ), SRP54_DANRE (Q7ZVN5 ), SRP54_DICDI (Q75K18 ), SRP54_ECO57 (P0AGD9 ), SRP54_ECOL6 (P0AGD8 ), SRP54_ECOLI (P0AGD7 ), SRP54_ENTHI (O15821 ), SRP54_GEOCY (Q8MZJ6 ), SRP54_HAEIN (P44518 ), SRP54_HELPJ (Q9ZK62 ), SRP54_HELPY (P56005 ), SRP54_HUMAN (P61011 ), SRP54_MACFA (Q4R965 ), SRP54_META3 (A6UWG4 ), SRP54_METAC (Q8THD0 ), SRP54_METBF (Q46E01 ), SRP54_METJA (Q57565 ), SRP54_METKA (Q8TUY9 ), SRP54_METM5 (A4FVX4 ), SRP54_METM6 (A9A9B0 ), SRP54_METM7 (A6VHE0 ), SRP54_METMA (Q8PXF3 ), SRP54_METMP (Q6LX03 ), SRP54_METS3 (A5UMY7 ), SRP54_METS5 (A4YHL0 ), SRP54_METST (Q2NE47 ), SRP54_METTH (O27376 ), SRP54_METVS (A6UQJ8 ), SRP54_MOUSE (P14576 ), SRP54_MYCBO (P66845 ), SRP54_MYCGE (P47294 ), SRP54_MYCMY (Q01442 ), SRP54_MYCPN (P75054 ), SRP54_MYCTO (P9WGD6 ), SRP54_MYCTU (P9WGD7 ), SRP54_PONAB (Q5R4R6 ), SRP54_PYRAB (Q9V1E8 ), SRP54_PYRFU (Q8U070 ), SRP54_PYRHO (O59307 ), SRP54_RAT (Q6AYB5 ), SRP54_RICBR (Q1RHD6 ), SRP54_RICCN (Q92J55 ), SRP54_RICFE (Q4UKH4 ), SRP54_RICPR (Q9ZDZ0 ), SRP54_RICTY (Q68XJ4 ), SRP54_SCHPO (P21565 ), SRP54_STRMU (Q54431 ), SRP54_SYNE7 (Q55311 ), SRP54_SYNY3 (P74214 ), SRP54_THEAC (Q9HKT0 ), SRP54_THEAQ (O07347 ), SRP54_THEGJ (C5A233 ), SRP54_THEKO (Q5JJC8 ), SRP54_THEON (B6YSS1 ), SRP54_THEVO (Q979Y8 ), SRP54_YARLI (Q99150 ), SRP54_YEAST (P20424 ), SRPRA_BOVIN (Q3MHE8 ), SRPRA_CANLF (P06625 ), SRPRA_DICDI (Q54ZR7 ), SRPRA_DROME (Q9U5L1 ), SRPRA_HUMAN (P08240 ), SRPRA_MOUSE (Q9DBG7 ), SRPR_SCHPO (O43032 ), SRPR_YEAST (P32916 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
45 sequences
FLHF_AQUAE (O67266 ), FLHF_BACSU (Q01960 ), FLHF_BORBU (Q44758 ), FLHF_CAMJE (O52908 ), FLHF_HELPJ (Q9ZM34 ), FLHF_HELPY (O25679 ), FLHF_PSEAE (Q9I3P8 ), FLHF_PSEPU (O52256 ), FLHF_TREPA (Q56339 ), FTSY_CHLPN (Q9Z6T7 ), FTSY_HELM1 (D3UJA7 ), FTSY_METAC (Q8TIN7 ), FTSY_MYCHP (O32861 ), FTSY_MYCMS (Q6MTB9 ), FTSY_THEAC (Q9HJ93 ), SRP54_ACIAM (P70722 ), SRP54_AERPE (Q9YB62 ), SRP54_HALLT (B9LT33 ), SRP54_HALMA (Q5UY20 ), SRP54_HALS3 (B0R7X3 ), SRP54_HALSA (Q9HMN5 ), SRP54_HALVD (Q977V2 ), SRP54_HALWD (Q18EV2 ), SRP54_HYPBU (A2BNB5 ), SRP54_METAR (Q0W2G1 ), SRP54_METBU (Q12ZG8 ), SRP54_METLZ (A2STI3 ), SRP54_METTP (A0B638 ), SRP54_MYCLE (O33013 ), SRP54_NATPD (Q3IUP1 ), SRP54_PYRAE (Q8ZT95 ), SRP54_PYRAR (A4WLQ3 ), SRP54_PYRCJ (A3MWX6 ), SRP54_PYRIL (A1RS43 ), SRP54_PYRNV (B1Y9L4 ), SRP54_SACS2 (Q97ZE7 ), SRP54_STAMF (A3DML3 ), SRP54_SULAC (O07853 ), SRP54_SULIA (C3N5B0 ), SRP54_SULIK (C4KGX6 ), SRP54_SULIL (C3MPN4 ), SRP54_SULIM (C3MYM8 ), SRP54_SULIN (C3NHT9 ), SRP54_SULIY (C3NDW4 ), SRP54_SULTO (Q971S9 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
17 sequences
CSPG2_MOUSE (Q62059 ), CSPG2_RAT (Q9ERB4 ), DHKM_DICDI (Q54SK5 ), EIF3F_CRYNB (P0CO85 ), EIF3F_CRYNJ (P0CO84 ), METR_HAEIN (P45349 ), NTPP_ROSDO (Q16CZ1 ), PURA_THEMA (Q9X0I1 ), RDRP_NMV (P15095 ), SECD_METKA (Q8TWM4 ), SECD_PYRFU (Q8U4B4 ), SEN54_MOUSE (Q8C2A2 ), SYL1_METS5 (A4YE96 ), SYM_HYPNA (Q0C161 ), SYM_RHOFT (Q21TB9 ), SYP_PSYIN (A1SZR1 ), ZYG1_CAEBR (Q621J7 )» more |
| PDB [Detailed view] |
61 PDB
1FFH; 1FTS; 1JPJ; 1JPN; 1LS1; 1NG1; 1O87; 1OKK; 1RJ9; 1RY1; 2C03; 2C04; 2CNW; 2FFH; 2IY3; 2IYL; 2J28; 2J37; 2J45; 2J46; 2J7P; 2NG1; 2OG2; 2Q9A; 2Q9B; 2Q9C; 2QY9; 2V3C; 2XKV; 2XXA; 2YHS; 3B9Q; 3DM5; 3NDB; 3NG1; 3ZN8; 4C7O; 4UE5; 5GAD; 5GAF; 5GAG; 5GAH; 5L3Q; 5L3R; 5L3S; 5L3W; 5NCO; 5NIY; 6CQP; 6CS8; 6CVD; 6DLX; 6FQD; 6FRK; 6N5I; 6N5J; 6N6N; 6N9B; 6NC1; 6NC4; 6R6G » more |
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