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PROSITE entry PS00307


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General information about the entry

Entry name [info] LECTIN_LEGUME_BETA
Accession [info] PS00307
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-JUL-1998 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins beta-chain signature.
Pattern [info] 
[LIV]-[STAG]-V-[DEQV]-[FLI]-D-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 295 in 295 different sequences
Number of true positive hits 107 in 107 different sequences
Number of 'unknown' hits 1
Number of false positive hits 187 in 187 different sequences
Number of false negative sequences 38
Number of 'partial' sequences 9
Precision (true positives / (true positives + false positives)) 36.39 %
Recall (true positives / (true positives + false negatives)) 73.79 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] manganese at position 4
Site [info] manganese_calcium at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 107 sequences 

ARC1_PHAVU  (P19329), ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), 

BGA16_ARATH (Q8GX69), CONA_CANBR  (P55915), CONA_CANCT  (P81461), 
CONA_CANEN  (P02866), CONA_CANGL  (P14894), CONA_CANLI  (P81460), 
CONA_CANRO  (P81364), CONV_CANCT  (C0HJY1), FRIL_LABPU  (Q9ZTA9), 
LCB1_ROBPS  (Q41159), LCB2_ROBPS  (Q42372), LCB3_ROBPS  (Q41160), 
LCS1_ROBPS  (Q41162), LCS2_ROBPS  (Q41161), LEA1_PHAVU  (P02873), 
LEA2_PHAVU  (Q41114), LEC1_CLAKE  (Q39528), LEC1_CRAMO  (P83721), 
LEC1_CYTSE  (P22970), LEC1_LABAL  (P23558), LEC1_MEDTR  (Q01806), 
LEC1_PSOTE  (O24313), LEC1_ULEEU  (P22972), LEC1_VIGUC  (P05045), 
LEC2_CLAKE  (Q39529), LEC2_CYTSC  (P29257), LEC2_CYTSE  (P22971), 
LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), LEC4_GRISI  (P24146), 
LEC5_MEDTR  (A0A396HQY2), LEC5_VIGUC  (P19588), LEC7_MEDTR  (G7LII0), 
LEC8_MEDTR  (Q2PP75), LECA2_LABPU (B3EWQ9), LECA_BIOPE  (J9PBR3), 
LECA_CANBL  (A0A023GPI8), LECA_CANBN  (P58906), LECA_CANGR  (A0A067XG71), 
LECA_CRAAG  (P81517), LECA_CYMRO  (P86184), LECA_DIOGR  (P08902), 
LECA_DIOGU  (P81637), LECA_DIOLA  (C0HK27), LECA_DIOSC  (B3EWJ2), 
LECA_DIOVI  (P58907), LECA_DIOVO  (P58909), LECA_LABPU  (P38662), 
LECA_MACBI  (P58908), LECA_MACCS  (C0HK81), LECA_MACWI  (P86624), 
LECA_SPAPA  (P86352), LECB_LATOC  (P04122), LECB_SPAPA  (P86353), 
LECB_STYJP  (P93538), LECC1_ARAHY (Q70DJ5), LECC1_CENMI (C0HK20), 
LECC1_CENTO (C0HJX1), LECG_ARAHY  (P02872), LECR_CLAKE  (Q39527), 
LECS_STYJP  (P93535), LECS_VATGU  (P86893), LECS_VATMA  (P81371), 
LECT_BAUFO  (P86993), LEC_BAUPU   (P16030), LEC_ERYCG   (P83410), 
LEC_ERYCO   (P16404), LEC_LATSP   (P16349), LEC_LENCC   (Q93WH6), 
LEC_LENCO   (Q93X49), LEC_LENCT   (Q8VXF2), LEC_LENCU   (P02870), 
LEC_LEUMI   (P42088), LEC_LOTTE   (P19664), LEC_ONOVI   (P02874), 
LEC_PEA (P02867), LEC_PHALU   (P16300), LEC_SOYBN   (P05046), 
LEC_VACFA   (P84849), LEC_VICFA   (P02871), LEC_VICVI   (P56625), 
LK110_ARATH (Q3E884), LRK12_ARATH (Q7FK82), LRK16_ARATH (Q9M1G3), 
LRK17_ARATH (Q9LSS0), LRK19_ARATH (Q9LSR8), LRK22_ARATH (Q9FIF0), 
LRK32_ARATH (Q9ZW11), LRK43_ARATH (O81292), LRK51_ARATH (O04534), 
LRK59_ARATH (Q9SZD5), LRK81_ARATH (Q9LFH9), LRK82_ARATH (Q9LYX1), 
LRKS1_ARATH (Q9M9E0), LRKS5_ARATH (Q9FG33), LRKS6_ARATH (Q9FHX3), 
LRSK7_ORYSJ (A0A0P0VIP0), MALB_MAAAM  (P93248), MALS_MAAAM  (P0DKL3), 
PHAE_PHAVU  (P05088), PHAL_PHAVU  (P05087), PHAM_PHAVU  (P15231), 
SIT1_ORYSJ  (Q6H7D2), YOUB_SCHPO  (O74793)
» more

UniProtKB/Swiss-Prot
False negative sequences		 38 sequences 

AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), LEC10_MEDTR (A9YWS7), 

LEC11_MEDTR (A0A396GS61), LEC2_CYMRO  (P86795), LEC6_MEDTR  (A9YWS4), 
LEC9_MEDTR  (Q2PP74), LECN_PEA(P16270), LECR_PEA(Q40987), 
LK111_ARATH (Q9FJI4), LRK11_ARATH (Q9M3E5), LRK13_ARATH (Q9M3D8), 
LRK14_ARATH (Q9M3D7), LRK15_ARATH (Q9M1G4), LRK18_ARATH (Q9LSR9), 
LRK21_ARATH (Q9FIF1), LRK31_ARATH (Q9ZW09), LRK41_ARATH (O80939), 
LRK42_ARATH (Q9M345), LRK44_ARATH (O81291), LRK52_ARATH (O04533), 
LRK53_ARATH (O22834), LRK54_ARATH (O22833), LRK55_ARATH (Q96285), 
LRK56_ARATH (Q9LEA3), LRK57_ARATH (Q9ZR79), LRK58_ARATH (Q9M1Z9), 
LRK61_ARATH (Q9SR87), LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), 
LRK64_ARATH (Q66GN2), LRK71_ARATH (Q9S9U1), LRK72_ARATH (O49445), 
LRK91_ARATH (Q9LXA5), LRK92_ARATH (Q9LSL5), LRKS4_ARATH (Q9M2S4), 
LRKS7_ARATH (Q9FHG4), SIT2_ORYSJ  (Q7XUN6)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 9 sequences 

LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 

LEC_CROPI   (P16351), LEC_DELRE   (P83511), LEC_MACAX   (P02875), 
LG29_VIGUS  (P83955), LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
» more

UniProtKB/Swiss-Prot
'Unknown' sequences		 1 sequence 

RNJ_SINM2   (M4MR97)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			187 sequences
			


			
3DHQ_PODAN  (Q86ZM3), A92_SSV1(P0C6K8), ACKA_TREDE  (Q73P66), 

			
ALG1_ARTBC  (D4AZD1), AROB_BORBR  (Q7WR84), AROB_BORPA  (Q7W2B6), 
AROB_BORPE  (Q7VT93), BBLA_TOBAC  (F1T160), BBLB_TOBAC  (A7WPL6), 
BBLC1_TOBAC (F1T161), BBLC2_TOBAC (A0A1S3ZQ17), BBLD2_TOBAC (A0A1S4CPU8), 
BGALA_NEOFI (A1D1Z9), BGL21_ORYSJ (Q60DY1), BI1_ORYSJ   (Q9MBD8), 
BIN3D_ARATH (Q6NPC9), CAOG1_ARATH (Q8H1H9), CARP3_CANAL (P0CY29), 
CARP3_CANAW (C4YNQ5), CARP3_CANAX (P0CY28), CDHR1_DANRE (Q6B3P0), 
CLPC_CHLMU  (Q9PKA8), CLPC_CHLTR  (O84288), CNOT1_DANRE (A1A5H6), 
CNOT1_HUMAN (A5YKK6), CNOT1_MOUSE (Q6ZQ08), CNOT1_XENTR (A0JP85), 
COAX_DEIRA  (Q9RX54), COBG_SINSX  (P21637), COXX_HALS3  (B0R3W4), 
COXX_HALSA  (Q9HRJ8), DIM1A_ARATH (O22268), DPO1_RICCN  (Q92GB7), 
DPO1_RICFE  (Q9RAA9), DPO1_RICHE  (Q9RLB6), ECDA_ASPRU  (K0E4D7), 
EGLN_MOUSE  (Q63961), ENV_FRSFL   (P03394), EPIP1_EPING (P83340), 
ERA_STRGC   (O24756), ERA_STRMU   (P37214), EXU2_DROPS  (Q24617), 
EXU_DROME   (P28750), EXU_DROVI   (Q24747), FCGRN_MOUSE (Q61559), 
FCGRN_RAT   (P13599), FMN2_HUMAN  (Q9NZ56), GARS_BOMMO  (Q04451), 
GARS_CAEEL  (Q10039), GARS_DROME  (Q9VUK8), GATC_POPTR  (B9INH0), 
GDL13_ARATH (Q38894), GEFV_DICDI  (Q55FD8), GLR3_CAEEL  (Q21415), 
HEXB_FELCA  (P49614), HIS7_LEGPA  (Q5X5X1), HIS7_LEGPH  (Q5ZW89), 
HIS7_LEGPL  (Q5WX93), I5P2_HUMAN  (P32019), IFFO1_HUMAN (Q0D2I5), 
IFFO1_MOUSE (Q8BXL9), IFFO2_HUMAN (Q5TF58), IFFO2_MOUSE (Q8R2V2), 
IMND1_VIBCR (C9NUM5), IR25A_DROME (E9NA96), ITPR3_BOVIN (Q8WN95), 
ITPR3_HUMAN (Q14573), ITPR3_MOUSE (P70227), ITPR3_RAT   (Q63269), 
K1C40_BOVIN (A7YWM2), K1C40_HUMAN (Q6A162), K1C40_MOUSE (Q6IFX3), 
KDAD_SACS2  (Q97UA0), KEX2_YEAST  (P13134), KI16B_HUMAN (Q96L93), 
KI16B_MOUSE (B1AVY7), KL98A_DROME (Q9VB25), LEU3_XYLFA  (Q9PAX3), 
LEU3_XYLFT  (Q87BQ1), LIPLL_LISMO (Q8Y489), LIPL_GEOKA  (Q5KUD7), 
LIPL_HALH5  (Q9K6A7), LRP2_HUMAN  (P98164), LRP2_PIG(C0HL13), 
MAC1_USTMA  (A0A0D1E3S6), MAK5_VANPO  (A7TEG8), MIAA_SALAI  (A8M7W9), 
MIAA_SALTO  (A4X4W1), MRAZ_MYCGA  (Q7NB78), MTP_MESAU   (P55158), 
NADK_NITEU  (Q82UK6), NCPR_SALTR  (P19618), NHAK_BACP2  (A8FHE3), 
NPY2R_BOVIN (P79113), NPY2R_CAVPO (Q9Z2D5), NPY2R_HUMAN (P49146), 
NPY2R_MACMU (Q9GK74), NPY2R_MOUSE (P97295), NPY2R_PANTR (Q5IS62), 
NPY2R_PIG   (O02836), NUSB_COREF  (Q8FT35), NUSB_CORGL  (Q8NQ33), 
PANB_VEREI  (A1WDW4), PATE_ASPCL  (A1CFL2), POL1_TRSVB  (Q88893), 
PRMA_CLOAB  (P45558), PUR4_CAEEL  (Q19311), PUS10_AERPE (Q9YEN2), 
RDRP_SHMV   (P89202), RECA_LACAC  (Q5FL82), RECA_LACHE  (Q02348), 
RECA_LACJO  (P62216), RECA_RHOBA  (Q7UJJ0), RECA_RUMA7  (P49985), 
RECA_STRCT  (P41055), RIMM_CELJU  (B3PDH6), RSMA_GEOMG  (Q39W34), 
RTC5_PARBD  (C1G788), RUVB_ANADF  (A7H910), SAS6_CAEBR  (Q60P76), 
SECY_CHLMU  (Q9PJN1), SECY_CHLPN  (Q9Z7S5), SGO1_HUMAN  (Q5FBB7), 
SIN1_HUMAN  (Q9BPZ7), SIN1_PONAB  (Q5RDV5), SMC_BORPD   (A9II65), 
SRP_DROME   (P52172), STCE_EMENI  (Q00674), STE20_YARLI (Q6C3D7), 
STYB_PSEFL  (O06835), SWT1_HUMAN  (Q5T5J6), SYA_SCHPO   (O13914), 
SYG_BDEBA   (Q6MNT9), SYG_BIFLO   (Q8G7W9), SYG_CLOAB   (Q97EB8), 
SYG_CLOPE   (Q8XHL9), SYG_COREF   (Q8FNG6), SYG_CORGL   (Q8NNC6), 
SYG_CUTAK   (Q6A964), SYG_DEIRA   (Q9RSR5), SYG_LEIXX   (Q6AHF7), 
SYG_MALP2   (Q8EW64), SYG_MESFL   (Q6F1J8), SYG_MYCBO   (P67033), 
SYG_MYCPA   (Q73Y21), SYG_MYCTO   (P9WFV6), SYG_MYCTU   (P9WFV7), 
SYG_NOCFA   (Q5YZT7), SYG_STRAW   (Q82BR9), SYG_STRCO   (Q9L2H9), 
SYH_MYCPA   (P60917), SYI_CLOPE   (Q8XHE4), SYM_META3   (A6UUN1), 
SYR_CLOAB   (Q97K78), SYR_CLOPE   (Q8XJU2), SYR_LATSS   (Q38VQ9), 
SYV_COREF   (Q8FN65), SYV_CORGL   (Q8NN37), SYV_CORJK   (Q4JWU8), 
SYV_NOCFA   (Q5Z048), T2BB_BACIU  (P33562), TAF5_CAEEL  (G5EF68), 
TBCD1_HUMAN (Q86TI0), TDCD_ECO57  (Q8XAF1), TDCD_ECOL6  (P59244), 
THTPA_RAT   (Q8CGV7), TOF1_PICST  (A3LR41), TPC1_HUMAN  (Q9ULQ1), 
TPC1_MOUSE  (Q9EQJ0), TPC1_RAT(Q9WTN5), TRH_DROME   (Q24119), 
TRPC_HALSA  (Q9HSC1), UL148_HCMVM (F5H8Q3), UREG_SPOPA  (Q9RP19), 
VAM6_SCHPO  (O13955), VPP4_CAEEL  (B2MZD0), Y076_OSHVF  (Q6R7F3), 
Y256_BUCBP  (Q89AL2), Y765_SPHAL  (Q1GV37), Y942_METJA  (Q58352), 
YDGH_BACSU  (P96706), YHJV_ECOLI  (P37660), YIDF_SCHPO  (Q9UTC4), 
YL581_MIMIV (Q5UR55), YR406_MIMIV (Q5UQK2), ZBT26_HUMAN (Q9HCK0), 
ZN287_MOUSE (Q9EQB9)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			268 PDB
			


			1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 
			
				1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DBN; 1DHK; 1DQ0; 
				1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 
				1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 
				1HQW; 1I3H; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 
				1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 
				1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 
				1QF3; 1QGL; 1QMO; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 
				1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 
				1VIW; 1VLN; 1WBF; 1WBL; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 
				2CY6; 2CYF; 2D3P; 2D3R; 2D3S; 2D7F; 2DH1; 2DTW; 2DTY; 2DU0; 2DU1; 2DV9; 
				2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2E51; 2E53; 2E7Q; 2E7T; 2EF6; 2EIG; 2ENR; 
				2FMD; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 
				2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 2ZMK; 2ZML; 2ZMN; 3CNA; 
				3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 
				3SNM; 3U4X; 3UJO; 3UJQ; 3UK9; 3UL2; 3WCR; 3WCS; 3WOG; 4CZS; 4D69; 4DPN; 
				4H55; 4I30; 4K1Y; 4K1Z; 4K20; 4K21; 4L8Q; 4M3C; 4MYE; 4NOT; 4P14; 4P9W; 
				4P9X; 4P9Y; 4PCR; 4PF5; 4TYS; 4TZD; 4U2A; 4U36; 4WV8; 4XTM; 4XTP; 4XXA; 
				4Z8B; 5AVA; 5BYN; 5CNA; 5EYX; 5EYY; 5F5Q; 5O6N; 5T50; 5T52; 5T54; 5T55; 
				5T5J; 5T5L; 5T5O; 5T5P; 5T7P; 5TG3; 5U3E; 5UUY; 5WEY; 5YGM; 5Z5L; 5Z5N; 
				5Z5P; 5Z5Y; 5ZAC; 6AHG; 6CJ9; 6GW9; 6H2M; 6V95; 6VAV; 6VAW; 6VB8; 6VC3; 
				6VC4; 6VGF; 6XT6; 7MG1; 7MG2; 7MG3; 7MG4; 7MG5; 7MG6; 7MG7; 7MG8; 7MG9; 
				7MGA; 7MGB; 7MGC; 7MGD
			
			

			» more