 |
|
| Entry: PS00310 |
General information about the entry
| Entry name [info] | LAMP_1 |
| Accession [info] | PS00310 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE; 07-APR-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00280 |
Name and characterization of the entry
| Description [info] | Lysosome-associated membrane glycoproteins duplicated domain signature. |
| Pattern [info] |
[STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y. |
Numerical results [info]
| Total number of hits | 28 in 23 different sequences |
| Number of true positive hits | 23 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 82.14 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Site [info] | disulfide at position 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
LAMP1_BOVIN (Q05204 ), LAMP1_CHICK (P05300 ), LAMP1_CRIGR (P49129 ), LAMP1_HUMAN (P11279 ), LAMP1_MOUSE (P11438 ), LAMP1_RAT (P14562 ), LAMP2_CHICK (Q90617 ), LAMP2_CRIGR (P49130 ), LAMP2_HUMAN (P13473 ), LAMP2_MOUSE (P17047 ), LAMP2_RAT (P17046 ), LAMP5_BOVIN (A4FV27 ), LAMP5_DANRE (A8WFR0 ), LAMP5_HUMAN (Q9UJQ1 ), LAMP5_MOUSE (Q9D387 ), LAMP5_PONAB (Q5R5V2 ), LAMP5_RAT (Q5PPI4 ), LAMP5_XENTR (A4IGL3 )» more
|
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
FTSW_IDILO (Q5R0M2 ), MTMRA_MOUSE (Q7TPM9 ), MTRAA_XENLA (Q5U581 ), MTRAB_XENLA (Q6NU08 ), SCP43_ARATH (Q84W27 )» more |
| PDB [Detailed view] |
2 PDB
5GV0; 5GV3 |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission