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PROSITE entry PS00310


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General information about the entry

Entry name [info] LAMP_1
Accession [info] PS00310
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-APR-1990 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00280

Name and characterization of the entry

Description [info] Lysosome-associated membrane glycoproteins duplicated domain signature.
Pattern [info] 
[STA]-C-[LIVM]-[LIVMFYW]-A-x-[LIVMFYW]-x(3)-[LIVMFYW]-x(3)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 28 in 23 different sequences
Number of true positive hits 23 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 82.14 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] disulfide at position 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 18 sequences 

LAMP1_BOVIN (Q05204), LAMP1_CHICK (P05300), LAMP1_CRIGR (P49129), 

LAMP1_HUMAN (P11279), LAMP1_MOUSE (P11438), LAMP1_RAT   (P14562), 
LAMP2_CHICK (Q90617), LAMP2_CRIGR (P49130), LAMP2_HUMAN (P13473), 
LAMP2_MOUSE (P17047), LAMP2_RAT   (P17046), LAMP5_BOVIN (A4FV27), 
LAMP5_DANRE (A8WFR0), LAMP5_HUMAN (Q9UJQ1), LAMP5_MOUSE (Q9D387), 
LAMP5_PONAB (Q5R5V2), LAMP5_RAT   (Q5PPI4), LAMP5_XENTR (A4IGL3)
» more

UniProtKB/Swiss-Prot
False positive sequences		 5 sequences 

FTSW_IDILO  (Q5R0M2), MTMRA_MOUSE (Q7TPM9), MTRAA_XENLA (Q5U581), 

MTRAB_XENLA (Q6NU08), SCP43_ARATH (Q84W27)
» more

PDB
[Detailed view]		 5 PDB

5GV0; 5GV3; 8ATH; 8FY5; 8FYF