PROSITE entry PS00311
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PURL: https://purl.expasy.org/prosite/signature/PS00311
Direct ScanProsite submission
General information about the entry
| Entry name [info] | LAMP_2 |
| Accession [info] | PS00311 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-JUN-1994 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00280 |
Name and characterization of the entry
| Description [info] | LAMP glycoproteins transmembrane and cytoplasmic domain signature. |
| Pattern [info] |
C-x(2)-D-x(3,4)-[LIVM](2)-P-[LIVM]-x-[LIVM]-G-x(2)-[LIVM]-x-G-[LIVM](2)- x-[LIVM](4)-A-[FY]-x-[LIVM]-x(2)-[KR]-[RH]-x(1,2)-[STAG](2)-Y-[EQ]. |
Numerical results [info]
| Total number of hits | 12 in 12 different sequences |
| Number of true positive hits | 12 in 12 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 1 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 92.31 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
12 sequences
CD68_HUMAN (P34810), CD68_MOUSE (P31996), LAMP1_BOVIN (Q05204),ยป more
|
| UniProtKB/Swiss-Prot False negative sequences |
1 sequence
LAMP2_CHICK (Q90617) |
| PDB [Detailed view] |
2 PDB
8FY5; 8FYF |