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PROSITE entry PS00327


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PURL: https://purl.expasy.org/prosite/signature/PS00327

Direct ScanProsite submission
General information about the entry

Entry name [info] BACTERIAL_OPSIN_RET
Accession [info] PS00327
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00291

Name and characterization of the entry

Description [info] Bacterial rhodopsins retinal binding site.
Pattern [info] 
[FYIV]-{ND}-[FYVG]-[LIVM]-D-[LIVMF]-x-[STA]-K-x-{K}-[FY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 49 in 49 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 16 in 16 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 67.35 %
Recall (true positives / (true positives + false negatives)) 91.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] retinal at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 33 sequences 

BAC3_HALVA  (Q48334), BACH_HALAR  (Q53461), BACH_HALHP  (Q48315), 

BACH_HALHS  (Q48314), BACH_HALMA  (Q5V1N0), BACH_HALS3  (B0R2U4), 
BACH_HALSA  (P0DMH7), BACH_HALSD  (O93742), BACH_HALSS  (P33742), 
BACH_HALVA  (P94853), BACH_NATPH  (P15647), BACR1_HALEZ (P69051), 
BACR1_HALMA (Q5UXY6), BACR1_HALSS (P69052), BACR1_HALWC (G0LFX8), 
BACR1_HALWD (Q18DH8), BACR2_HALS2 (P29563), BACR3_HALSD (P96787), 
BACR_HALAR  (Q57101), BACR_HALS4  (O93740), BACR_HALSA  (P02945), 
BACR_HALSR  (Q53496), BACR_HALVA  (P94854), BACS1_HALMA (Q5UXM9), 
BACS1_HALS3 (B0R633), BACS1_HALSA (P0DMH8), BACS1_HALSS (P33743), 
BACS2_HALMA (Q5V5V3), BACS2_HALSA (P71411), BACS2_HALVA (P42197), 
BACS2_NATPH (P42196), BACS_HALSD  (O93743), NOP1_NEUCR  (Q9UW81)
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

PRRB_PRB02  (Q9AFF7), PRRG_PRB01  (Q9F7P4), PRRG_UNKP   (Q6J4G7)


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			4 sequences
			


			
BACH_HALHM  (P33970), BACR_HALHM  (P33969), BACR_HALHP  (P33971), 

			
BACR_HALHS  (P33972)


			
			» more
			


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			16 sequences
			


			
EFG2_PSET1  (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), 

			
GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), 
GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), 
PROB_LEPIC  (Q72NQ8), PROB_LEPIN  (P94871), RAB6C_HUMAN (Q9H0N0), 
RAB6D_HUMAN (Q53S08), TRMB_CHLAA  (A9WHH4), TRMB_CHLAD  (B8GAY2), 
TRMB_CHLSY  (B9LBT1)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			214 PDB
			


			pdb_00001ap9; pdb_00001at9; pdb_00001bct; pdb_00001bm1; pdb_00001brd; pdb_00001brr; pdb_00001brx; pdb_00001c3w; pdb_00001c8r; pdb_00001c8s; pdb_00001cwq; pdb_00001dze; 
			
				pdb_00001e0p; pdb_00001e12; pdb_00001f4z; pdb_00001f50; pdb_00001fbb; pdb_00001gu8; pdb_00001gue; pdb_00001h2s; pdb_00001h68; pdb_00001iw6; pdb_00001iw9; pdb_00001ixf; 
				pdb_00001jgj; pdb_00001jv7; pdb_00001kg8; pdb_00001kg9; pdb_00001kgb; pdb_00001kme; pdb_00001m0k; pdb_00001m0l; pdb_00001m0m; pdb_00001mgy; pdb_00001o0a; pdb_00001p8h; 
				pdb_00001p8u; pdb_00001pxr; pdb_00001pxs; pdb_00001py6; pdb_00001q5i; pdb_00001q5j; pdb_00001qhj; pdb_00001qko; pdb_00001qkp; pdb_00001qm8; pdb_00001r2n; pdb_00001r84; 
				pdb_00001s51; pdb_00001s52; pdb_00001s53; pdb_00001s54; pdb_00001s8j; pdb_00001s8l; pdb_00001tn0; pdb_00001tn5; pdb_00001uaz; pdb_00001ucq; pdb_00001vgo; pdb_00001vjm; 
				pdb_00001x0i; pdb_00001x0k; pdb_00001x0s; pdb_00001xji; pdb_00002at9; pdb_00002brd; pdb_00002ei4; pdb_00002f93; pdb_00002f95; pdb_00002i1x; pdb_00002i20; pdb_00002i21; 
				pdb_00002jaf; pdb_00002jag; pdb_00002ntu; pdb_00002ntw; pdb_00002wjk; pdb_00002wjl; pdb_00002z55; pdb_00002zfe; pdb_00002zzl; pdb_00003coc; pdb_00003cod; pdb_00003han; 
				pdb_00003hao; pdb_00003hap; pdb_00003haq; pdb_00003har; pdb_00003has; pdb_00003mbv; pdb_00003ns0; pdb_00003nsb; pdb_00003qap; pdb_00003qdc; pdb_00003t45; pdb_00003utv; 
				pdb_00003utw; pdb_00003utx; pdb_00003uty; pdb_00003vhz; pdb_00003vi0; pdb_00003wqj; pdb_00004gyc; pdb_00004hwl; pdb_00004hyx; pdb_00004jr8; pdb_00004l35; pdb_00004md1; 
				pdb_00004md2; pdb_00004ov0; pdb_00004pxk; pdb_00004qi1; pdb_00004qid; pdb_00004wav; pdb_00004x31; pdb_00004x32; pdb_00004xxj; pdb_00005a44; pdb_00005a45; pdb_00005ahy; 
				pdb_00005ahz; pdb_00005b34; pdb_00005b35; pdb_00005b6v; pdb_00005b6w; pdb_00005b6x; pdb_00005b6y; pdb_00005b6z; pdb_00005br2; pdb_00005br5; pdb_00005g36; pdb_00005h2h; 
				pdb_00005h2i; pdb_00005h2j; pdb_00005h2k; pdb_00005h2l; pdb_00005h2m; pdb_00005h2n; pdb_00005h2o; pdb_00005h2p; pdb_00005itc; pdb_00005ite; pdb_00005j7a; pdb_00005jje; 
				pdb_00005jjf; pdb_00005jjj; pdb_00005jjn; pdb_00005kkh; pdb_00005vn7; pdb_00005vn9; pdb_00005zil; pdb_00005zim; pdb_00005zin; pdb_00006g7h; pdb_00006g7i; pdb_00006g7j; 
				pdb_00006g7k; pdb_00006g7l; pdb_00006ga1; pdb_00006ga2; pdb_00006ga3; pdb_00006ga4; pdb_00006ga5; pdb_00006ga6; pdb_00006ga7; pdb_00006ga8; pdb_00006ga9; pdb_00006gaa; 
				pdb_00006gab; pdb_00006gac; pdb_00006gad; pdb_00006gae; pdb_00006gaf; pdb_00006gag; pdb_00006gah; pdb_00006gai; pdb_00006gux; pdb_00006guy; pdb_00006guz; pdb_00006rmk; 
				pdb_00006rnj; pdb_00006rph; pdb_00006rqo; pdb_00006rqp; pdb_00006s63; pdb_00006s6c; pdb_00007pnc; pdb_00007q35; pdb_00007q38; pdb_00007vso; pdb_00007xjc; pdb_00007xjd; 
				pdb_00007xje; pdb_00007z09; pdb_00007z0a; pdb_00007z0c; pdb_00007z0d; pdb_00007z0e; pdb_00007zcm; pdb_00007zy3; pdb_00008pwg; pdb_00008pwi; pdb_00008pwj; pdb_00008pwp; 
				pdb_00008pwq; pdb_00009f9b; pdb_00009f9c; pdb_00009f9d; pdb_00009f9e; pdb_00009f9f; pdb_00009f9g; pdb_00009f9h; pdb_00009f9i; pdb_00009f9j
			
			

			» more