PROSITE entry PS00327
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General information about the entry
Entry name [info] | BACTERIAL_OPSIN_RET |
Accession [info] | PS00327 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00291 |
Name and characterization of the entry
Description [info] | Bacterial rhodopsins retinal binding site. |
Pattern [info] |
[FYIV]-{ND}-[FYVG]-[LIVM]-D-[LIVMF]-x-[STA]-K-x-{K}-[FY]. |
Numerical results [info]
Total number of hits | 49 in 49 different sequences |
Number of true positive hits | 33 in 33 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 16 in 16 different sequences |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 4 |
Precision (true positives / (true positives + false positives)) | 67.35 % |
Recall (true positives / (true positives + false negatives)) | 91.67 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | retinal at position 9 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
33 sequences
BAC3_HALVA (Q48334), BACH_HALAR (Q53461), BACH_HALHP (Q48315), BACH_HALHS (Q48314), BACH_HALMA (Q5V1N0), BACH_HALS3 (B0R2U4), BACH_HALSA (P0DMH7), BACH_HALSD (O93742), BACH_HALSS (P33742), BACH_HALVA (P94853), BACH_NATPH (P15647), BACR1_HALEZ (P69051), BACR1_HALMA (Q5UXY6), BACR1_HALSS (P69052), BACR1_HALWC (G0LFX8), BACR1_HALWD (Q18DH8), BACR2_HALS2 (P29563), BACR3_HALSD (P96787), BACR_HALAR (Q57101), BACR_HALS4 (O93740), BACR_HALSA (P02945), BACR_HALSR (Q53496), BACR_HALVA (P94854), BACS1_HALMA (Q5UXM9), BACS1_HALS3 (B0R633), BACS1_HALSA (P0DMH8), BACS1_HALSS (P33743), BACS2_HALMA (Q5V5V3), BACS2_HALSA (P71411), BACS2_HALVA (P42197), BACS2_NATPH (P42196), BACS_HALSD (O93743), NOP1_NEUCR (Q9UW81)» more
|
UniProtKB/Swiss-Prot False negative sequences |
3 sequences
PRRB_PRB02 (Q9AFF7), PRRG_PRB01 (Q9F7P4), PRRG_UNKP (Q6J4G7) |
UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
BACH_HALHM (P33970), BACR_HALHM (P33969), BACR_HALHP (P33971), BACR_HALHS (P33972)» more |
UniProtKB/Swiss-Prot False positive sequences |
16 sequences
EFG2_PSET1 (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), PROB_LEPIC (Q72NQ8), PROB_LEPIN (P94871), RAB6C_HUMAN (Q9H0N0), RAB6D_HUMAN (Q53S08), TRMB_CHLAA (A9WHH4), TRMB_CHLAD (B8GAY2), TRMB_CHLSY (B9LBT1)» more |
PDB [Detailed view] |
201 PDB
1AP9; 1AT9; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0; 3WQJ; 4GYC; 4HWL; 4HYX; 4JR8; 4L35; 4MD1; 4MD2; 4OV0; 4PXK; 4QI1; 4QID; 4WAV; 4X31; 4X32; 4XXJ; 5A44; 5A45; 5AHY; 5AHZ; 5B34; 5B35; 5B6V; 5B6W; 5B6X; 5B6Y; 5B6Z; 5BR2; 5BR5; 5G36; 5H2H; 5H2I; 5H2J; 5H2K; 5H2L; 5H2M; 5H2N; 5H2O; 5H2P; 5ITC; 5ITE; 5J7A; 5JJE; 5JJF; 5JJJ; 5JJN; 5KKH; 5VN7; 5VN9; 5ZIL; 5ZIM; 5ZIN; 6G7H; 6G7I; 6G7J; 6G7K; 6G7L; 6GA1; 6GA2; 6GA3; 6GA4; 6GA5; 6GA6; 6GA7; 6GA8; 6GA9; 6GAA; 6GAB; 6GAC; 6GAD; 6GAE; 6GAF; 6GAG; 6GAH; 6GAI; 6GUX; 6GUY; 6GUZ; 6RMK; 6RNJ; 6RPH; 6RQO; 6RQP; 6S63; 6S6C; 7PNC; 7Q35; 7Q38; 7VSO; 7XJC; 7XJD; 7XJE; 7Z09; 7Z0A; 7Z0C; 7Z0D; 7Z0E; 7ZCM; 7ZY3; 8QQO » more |