PROSITE entry PS00327

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] BACTERIAL_OPSIN_RET
Accession [info] PS00327
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
PROSITE Doc. [info] PDOC00291

Name and characterization of the entry

Description [info] Bacterial rhodopsins retinal binding site.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.

Total number of hits 49 in 49 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 16 in 16 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 67.35 %
Recall (true positives / (true positives + false negatives)) 91.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] retinal at position 9
Version [info] 1

Cross-references [info]

True positive sequences
33 sequences

BAC3_HALVA  (Q48334    ), BACH_HALAR  (Q53461    ), BACH_HALHP  (Q48315    ), 
BACH_HALHS  (Q48314    ), BACH_HALMA  (Q5V1N0    ), BACH_HALS3  (B0R2U4    ), 
BACH_HALSA  (P0DMH7    ), BACH_HALSD  (O93742    ), BACH_HALSS  (P33742    ), 
BACH_HALVA  (P94853    ), BACH_NATPH  (P15647    ), BACR1_HALEZ (P69051    ), 
BACR1_HALMA (Q5UXY6    ), BACR1_HALSS (P69052    ), BACR1_HALWC (G0LFX8    ), 
BACR1_HALWD (Q18DH8    ), BACR2_HALS2 (P29563    ), BACR3_HALSD (P96787    ), 
BACR_HALAR  (Q57101    ), BACR_HALS4  (O93740    ), BACR_HALSA  (P02945    ), 
BACR_HALSR  (Q53496    ), BACR_HALVA  (P94854    ), BACS1_HALMA (Q5UXM9    ), 
BACS1_HALS3 (B0R633    ), BACS1_HALSA (P0DMH8    ), BACS1_HALSS (P33743    ), 
BACS2_HALMA (Q5V5V3    ), BACS2_HALSA (P71411    ), BACS2_HALVA (P42197    ), 
BACS2_NATPH (P42196    ), BACS_HALSD  (O93743    ), NOP1_NEUCR  (Q9UW81    )
» more

False negative sequences
3 sequences

PRRB_PRB02  (Q9AFF7    ), PRRG_PRB01  (Q9F7P4    ), PRRG_UNKP   (Q6J4G7    )

'Partial' sequences
4 sequences

BACH_HALHM  (P33970    ), BACR_HALHM  (P33969    ), BACR_HALHP  (P33971    ), 
BACR_HALHS  (P33972    )
» more

False positive sequences
16 sequences

EFG2_PSET1  (Q3IJW9    ), GLS24_STRP1 (Q99ZE5    ), GLS24_STRP3 (P0CZ86    ), 
GLS24_STRP6 (Q5XBW6    ), GLS24_STRP8 (Q7CN70    ), GLS24_STRPM (Q48TA2    ), 
GLS24_STRPQ (P0CZ87    ), LIS11_POSPM (B8P4B0    ), LIS12_POSPM (B8PD53    ), 
PROB_LEPIC  (Q72NQ8    ), PROB_LEPIN  (P94871    ), RAB6C_HUMAN (Q9H0N0    ), 
RAB6D_HUMAN (Q53S08    ), TRMB_CHLAA  (A9WHH4    ), TRMB_CHLAD  (B8GAY2    ), 
» more

[Detailed view]
195 PDB

1AP9; 1AT9; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0; 3WQJ; 4GYC; 4HWL; 4HYX; 4JR8; 4L35; 4MD1; 4MD2; 4OV0; 4PXK; 4QI1; 4QID; 4WAV; 4X31; 4X32; 4XXJ; 5A44; 5A45; 5AHY; 5AHZ; 5B34; 5B35; 5B6V; 5B6W; 5B6X; 5B6Y; 5B6Z; 5BR2; 5BR5; 5G36; 5H2H; 5H2I; 5H2J; 5H2K; 5H2L; 5H2M; 5H2N; 5H2O; 5H2P; 5ITC; 5ITE; 5J7A; 5JJE; 5JJF; 5JJJ; 5JJN; 5KKH; 5VN7; 5VN9; 5ZIL; 5ZIM; 5ZIN; 6G7H; 6G7I; 6G7J; 6G7K; 6G7L; 6GA1; 6GA2; 6GA3; 6GA4; 6GA5; 6GA6; 6GA7; 6GA8; 6GA9; 6GAA; 6GAB; 6GAC; 6GAD; 6GAE; 6GAF; 6GAG; 6GAH; 6GAI; 6GUX; 6GUY; 6GUZ; 6RMK; 6RNJ; 6RPH; 6RQO; 6RQP; 6S63; 6S6C; 7PNC; 7Q35; 7Q38; 7VSO; 7Z09; 7Z0A; 7Z0C; 7Z0D; 7Z0E
» more