PROSITE entry PS00333
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General information about the entry
| Entry name [info] | DNA_LIGASE_A2 |
| Accession [info] | PS00333 |
| Entry type [info] | PATTERN |
| Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00295 |
Name and characterization of the entry
| Description [info] | ATP-dependent DNA ligase signature 2. |
| Pattern [info] |
E-G-[LIVMA]-[LIVM]-[LIVMA]-[KR]-x(5,8)-[YW]-[QNEKTI]-x(2,6)-[KRH]-x(3,5)- K-[LIVMFY]-K. |
Numerical results [info]
| Total number of hits | 106 in 106 different sequences |
| Number of true positive hits | 106 in 106 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 54 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 66.25 % |
Comments [info]
| Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
106 sequences
DNLI1_ARATH (Q42572 ), DNLI1_CAEEL (Q27474 ), DNLI1_DICDI (Q869E1 ), DNLI1_DROME (Q9W1H4 ), DNLI1_HALWD (Q18HT7 ), DNLI1_HUMAN (P18858 ), DNLI1_KORCO (B1L3K8 ), DNLI1_MOUSE (P37913 ), DNLI1_RAT (Q9JHY8 ), DNLI1_SCHPO (P12000 ), DNLI1_XENLA (P51892 ), DNLI1_YEAST (P04819 ), DNLI2_KORCO (B1L3V2 ), DNLI3_DICDI (Q54QM4 ), DNLI3_HUMAN (P49916 ), DNLI3_MOUSE (P97386 ), DNLI4_ARATH (Q9LL84 ), DNLI4_CANAL (P52496 ), DNLI4_CHICK (Q90YB1 ), DNLI4_COPC7 (A8N936 ), DNLI4_COPCI (Q7Z7W5 ), DNLI4_CRIGR (G3GTP0 ), DNLI4_CRYNB (P0CN09 ), DNLI4_CRYNJ (P0CN08 ), DNLI4_HUMAN (P49917 ), DNLI4_MOUSE (Q8BTF7 ), DNLI4_ORYSJ (Q7X7E9 ), DNLI4_PONAB (Q5R6L3 ), DNLI4_YEAST (Q08387 ), DNLI_ACIAM (Q02093 ), DNLI_AERPE (Q9YD18 ), DNLI_ANAD2 (B8JBM1 ), DNLI_ANADE (Q2IH69 ), DNLI_ANADF (A7HID3 ), DNLI_ANASK (B4UIS1 ), DNLI_ARCFU (O29632 ), DNLI_ASFB7 (P35970 ), DNLI_ASFK5 (P0C992 ), DNLI_ASFM2 (P26813 ), DNLI_ASFP4 (P0C990 ), DNLI_ASFWA (P0C991 ), DNLI_BEUC1 (C5BW79 ), DNLI_BPT3 (P07717 ), DNLI_BPT4 (P00970 ), DNLI_BPT6 (P19088 ), DNLI_BPT7 (P00969 ), DNLI_DICT6 (B5YD88 ), DNLI_DICTD (B8DZX8 ), DNLI_HAEIN (P44121 ), DNLI_HYPBU (A2BJX6 ), DNLI_IGNH4 (A8AB20 ), DNLI_META3 (A6UVC4 ), DNLI_METB6 (A7IAA9 ), DNLI_METHJ (Q2FTH4 ), DNLI_METJA (Q57635 ), DNLI_METKA (Q8TWN3 ), DNLI_METM5 (A4FY19 ), DNLI_METM6 (A9AAX4 ), DNLI_METM7 (A6VFQ9 ), DNLI_METMJ (A3CWP1 ), DNLI_METMP (Q6LYM1 ), DNLI_METS3 (A5UKX2 ), DNLI_METS5 (A4YD25 ), DNLI_METTF (P54875 ), DNLI_METTH (Q50566 ), DNLI_METTP (A0B7F9 ), DNLI_METVS (A6UNY0 ), DNLI_MONPV (A0A7H0DNE6), DNLI_MYCA1 (A0QJL0 ), DNLI_MYCGI (A4TDS2 ), DNLI_MYCPA (Q73V97 ), DNLI_MYCS2 (A0QUP1 ), DNLI_MYCSJ (A3PXE2 ), DNLI_MYCSK (A1UDY9 ), DNLI_MYCSS (Q1BB26 ), DNLI_MYCVP (A1T6P2 ), DNLI_NITMS (A9A3K1 ), DNLI_NOCSJ (A1SKL2 ), DNLI_OPITP (B1ZZL9 ), DNLI_PYRAB (P0CL75 ), DNLI_PYRAY (P0CL74 ), DNLI_PYRFU (P56709 ), DNLI_PYRHO (O59288 ), DNLI_SACS2 (Q980T8 ), DNLI_SACSH (Q9P9K9 ), DNLI_SORC5 (A9GU24 ), DNLI_STAMF (A3DP49 ), DNLI_SULAC (Q4JAM1 ), DNLI_SULIA (C3MZR1 ), DNLI_SULIK (C4KIZ2 ), DNLI_SULIL (C3MJ14 ), DNLI_SULIM (C3MYD2 ), DNLI_SULIN (C3NF77 ), DNLI_SULIY (C3N834 ), DNLI_SULTO (Q976G4 ), DNLI_SULZI (D2CJS7 ), DNLI_THEAC (Q9HJ26 ), DNLI_THEFM (Q9HH07 ), DNLI_THEKO (Q9HHC4 ), DNLI_THEON (B6YTR4 ), DNLI_THEVO (Q979A1 ), DNLI_VACCA (O57250 ), DNLI_VACCC (P20492 ), DNLI_VACCW (P16272 ), DNLI_VAR67 (P0DOO3 ), DNLI_VARV (P0DOO4 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
54 sequences
DNLI1_METAC (Q8TSR7 ), DNLI1_METBF (Q46C04 ), DNLI1_METMA (Q8PVR7 ), DNLI1_THEPD (A1RXA6 ), DNLI2_HALWD (Q18GX5 ), DNLI2_METAC (Q8TMT1 ), DNLI2_METBF (Q46BA3 ), DNLI2_METMA (Q8PTK1 ), DNLI2_THEPD (A1RY72 ), DNLI3_SCHPO (Q9C1W9 ), DNLI4_SCHPO (O74833 ), DNLI_AQUAE (O67398 ), DNLI_CALMQ (A8MDU6 ), DNLI_CENSY (A0RWD6 ), DNLI_FOWPN (Q67480 ), DNLI_HALLT (B9LUZ9 ), DNLI_HALMA (Q5V4R0 ), DNLI_HALS3 (B0R4C9 ), DNLI_HALSA (Q9HR35 ), DNLI_HALVD (D4GYZ4 ), DNLI_KINRD (A6WG40 ), DNLI_KORVE (Q1II25 ), DNLI_METAR (Q0W0X1 ), DNLI_METBU (Q12X08 ), DNLI_METLZ (A2SR38 ), DNLI_METPE (B8GGB8 ), DNLI_METST (Q2NHF9 ), DNLI_MYCBO (Q7TTR7 ), DNLI_MYCBP (A1KN60 ), DNLI_MYCBT (C1AGI1 ), DNLI_MYCMM (B2HHE1 ), DNLI_MYCTA (A5U776 ), DNLI_MYCTO (P9WNV4 ), DNLI_MYCTU (P9WNV5 ), DNLI_MYCUA (A0PTC0 ), DNLI_NANEQ (Q74M64 ), DNLI_NATPD (Q3IPX0 ), DNLI_NOCFA (Q5YNY7 ), DNLI_NPVLD (Q9YMV2 ), DNLI_PERMH (C0QSL7 ), DNLI_PICTO (Q6L195 ), DNLI_PSECP (B8HCE1 ), DNLI_PYRAE (O93723 ), DNLI_PYRAR (A4WH24 ), DNLI_PYRCJ (A3MS62 ), DNLI_PYRIL (A1RTK4 ), DNLI_PYRNV (B1YA52 ), DNLI_RHOJR (Q0SG75 ), DNLI_RHOOB (C1AX87 ), DNLI_SACEN (A4F870 ), DNLI_STRAW (Q826P6 ), DNLI_STRCO (Q9FCB1 ), DNLI_STRGG (B1W5J2 ), LIGD_BACSU (O34398 )» more |
| PDB [Detailed view] |
38 PDB
1A0I; 1X9N; 2CFM; 2HIV; 2HIX; 3GDE; 3L2P; 3W1B; 3W1G; 3W5O; 6BKF; 6BKG; 6DT1; 6IMJ; 6IMK; 6IML; 6IMN; 6P09; 6P0A; 6P0B; 6P0C; 6P0D; 6P0E; 6Q1V; 7KR3; 7KR4; 7L34; 7L35; 7LSY; 7LT3; 7NFC; 7NFE; 7RPO; 7RPW; 7RPX; 7SUM; 7SX5; 7SXE » more |