PROSITE entry PS00333
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General information about the entry
Entry name [info] | DNA_LIGASE_A2 |
Accession [info] | PS00333 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00295 |
Name and characterization of the entry
Description [info] | ATP-dependent DNA ligase signature 2. |
Pattern [info] |
E-G-[LIVMA]-[LIVM]-[LIVMA]-[KR]-x(5,8)-[YW]-[QNEKTI]-x(2,6)-[KRH]-x(3,5)- K-[LIVMFY]-K. |
Numerical results [info]
Total number of hits | 106 in 106 different sequences |
Number of true positive hits | 106 in 106 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 54 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 66.25 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
106 sequences
DNLI1_ARATH (Q42572), DNLI1_CAEEL (Q27474), DNLI1_DICDI (Q869E1), DNLI1_DROME (Q9W1H4), DNLI1_HALWD (Q18HT7), DNLI1_HUMAN (P18858), DNLI1_KORCO (B1L3K8), DNLI1_MOUSE (P37913), DNLI1_RAT (Q9JHY8), DNLI1_SCHPO (P12000), DNLI1_XENLA (P51892), DNLI1_YEAST (P04819), DNLI2_KORCO (B1L3V2), DNLI3_DICDI (Q54QM4), DNLI3_HUMAN (P49916), DNLI3_MOUSE (P97386), DNLI4_ARATH (Q9LL84), DNLI4_CANAL (P52496), DNLI4_CHICK (Q90YB1), DNLI4_COPC7 (A8N936), DNLI4_COPCI (Q7Z7W5), DNLI4_CRIGR (G3GTP0), DNLI4_CRYNB (P0CN09), DNLI4_CRYNJ (P0CN08), DNLI4_HUMAN (P49917), DNLI4_MOUSE (Q8BTF7), DNLI4_ORYSJ (Q7X7E9), DNLI4_PONAB (Q5R6L3), DNLI4_YEAST (Q08387), DNLI_ACIAM (Q02093), DNLI_AERPE (Q9YD18), DNLI_ANAD2 (B8JBM1), DNLI_ANADE (Q2IH69), DNLI_ANADF (A7HID3), DNLI_ANASK (B4UIS1), DNLI_ARCFU (O29632), DNLI_ASFB7 (P35970), DNLI_ASFK5 (P0C992), DNLI_ASFM2 (P26813), DNLI_ASFP4 (P0C990), DNLI_ASFWA (P0C991), DNLI_BEUC1 (C5BW79), DNLI_BPT3 (P07717), DNLI_BPT4 (P00970), DNLI_BPT6 (P19088), DNLI_BPT7 (P00969), DNLI_DICT6 (B5YD88), DNLI_DICTD (B8DZX8), DNLI_HAEIN (P44121), DNLI_HYPBU (A2BJX6), DNLI_IGNH4 (A8AB20), DNLI_META3 (A6UVC4), DNLI_METB6 (A7IAA9), DNLI_METHJ (Q2FTH4), DNLI_METJA (Q57635), DNLI_METKA (Q8TWN3), DNLI_METM5 (A4FY19), DNLI_METM6 (A9AAX4), DNLI_METM7 (A6VFQ9), DNLI_METMJ (A3CWP1), DNLI_METMP (Q6LYM1), DNLI_METS3 (A5UKX2), DNLI_METS5 (A4YD25), DNLI_METTF (P54875), DNLI_METTH (Q50566), DNLI_METTP (A0B7F9), DNLI_METVS (A6UNY0), DNLI_MONPV (A0A7H0DNE6), DNLI_MYCA1 (A0QJL0), DNLI_MYCGI (A4TDS2), DNLI_MYCPA (Q73V97), DNLI_MYCS2 (A0QUP1), DNLI_MYCSJ (A3PXE2), DNLI_MYCSK (A1UDY9), DNLI_MYCSS (Q1BB26), DNLI_MYCVP (A1T6P2), DNLI_NITMS (A9A3K1), DNLI_NOCSJ (A1SKL2), DNLI_OPITP (B1ZZL9), DNLI_PYRAB (P0CL75), DNLI_PYRAY (P0CL74), DNLI_PYRFU (P56709), DNLI_PYRHO (O59288), DNLI_SACS2 (Q980T8), DNLI_SACSH (Q9P9K9), DNLI_SORC5 (A9GU24), DNLI_STAMF (A3DP49), DNLI_SULAC (Q4JAM1), DNLI_SULIA (C3MZR1), DNLI_SULIK (C4KIZ2), DNLI_SULIL (C3MJ14), DNLI_SULIM (C3MYD2), DNLI_SULIN (C3NF77), DNLI_SULIY (C3N834), DNLI_SULTO (Q976G4), DNLI_SULZI (D2CJS7), DNLI_THEAC (Q9HJ26), DNLI_THEFM (Q9HH07), DNLI_THEKO (Q9HHC4), DNLI_THEON (B6YTR4), DNLI_THEVO (Q979A1), DNLI_VACCA (O57250), DNLI_VACCC (P20492), DNLI_VACCW (P16272), DNLI_VAR67 (P0DOO3), DNLI_VARV (P0DOO4)» more
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UniProtKB/Swiss-Prot False negative sequences |
54 sequences
DNLI1_METAC (Q8TSR7), DNLI1_METBF (Q46C04), DNLI1_METMA (Q8PVR7), DNLI1_THEPD (A1RXA6), DNLI2_HALWD (Q18GX5), DNLI2_METAC (Q8TMT1), DNLI2_METBF (Q46BA3), DNLI2_METMA (Q8PTK1), DNLI2_THEPD (A1RY72), DNLI3_SCHPO (Q9C1W9), DNLI4_SCHPO (O74833), DNLI_AQUAE (O67398), DNLI_CALMQ (A8MDU6), DNLI_CENSY (A0RWD6), DNLI_FOWPN (Q67480), DNLI_HALLT (B9LUZ9), DNLI_HALMA (Q5V4R0), DNLI_HALS3 (B0R4C9), DNLI_HALSA (Q9HR35), DNLI_HALVD (D4GYZ4), DNLI_KINRD (A6WG40), DNLI_KORVE (Q1II25), DNLI_METAR (Q0W0X1), DNLI_METBU (Q12X08), DNLI_METLZ (A2SR38), DNLI_METPE (B8GGB8), DNLI_METST (Q2NHF9), DNLI_MYCBO (Q7TTR7), DNLI_MYCBP (A1KN60), DNLI_MYCBT (C1AGI1), DNLI_MYCMM (B2HHE1), DNLI_MYCTA (A5U776), DNLI_MYCTO (P9WNV4), DNLI_MYCTU (P9WNV5), DNLI_MYCUA (A0PTC0), DNLI_NANEQ (Q74M64), DNLI_NATPD (Q3IPX0), DNLI_NOCFA (Q5YNY7), DNLI_NPVLD (Q9YMV2), DNLI_PERMH (C0QSL7), DNLI_PICTO (Q6L195), DNLI_PSECP (B8HCE1), DNLI_PYRAE (O93723), DNLI_PYRAR (A4WH24), DNLI_PYRCJ (A3MS62), DNLI_PYRIL (A1RTK4), DNLI_PYRNV (B1YA52), DNLI_RHOJR (Q0SG75), DNLI_RHOOB (C1AX87), DNLI_SACEN (A4F870), DNLI_STRAW (Q826P6), DNLI_STRCO (Q9FCB1), DNLI_STRGG (B1W5J2), LIGD_BACSU (O34398)» more |
PDB [Detailed view] |
46 PDB
1A0I; 1X9N; 2CFM; 2HIV; 2HIX; 3GDE; 3L2P; 3W1B; 3W1G; 3W5O; 6BKF; 6BKG; 6DT1; 6IMJ; 6IMK; 6IML; 6IMN; 6P09; 6P0A; 6P0B; 6P0C; 6P0D; 6P0E; 6Q1V; 7KR3; 7KR4; 7L34; 7L35; 7LSY; 7LT3; 7NFC; 7NFE; 7QNZ; 7QO1; 7RPO; 7RPW; 7RPX; 7SUM; 7SX5; 7SXE; 8BH3; 8BHV; 8BHY; 8BOT; 8EZA; 8EZB » more |