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PROSITE entry PS00352


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General information about the entry

Entry name [info] CSD_1
Accession [info] PS00352
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00304

Name and characterization of the entry

Description [info] Cold-shock (CSD) domain signature.
Pattern [info]
[FYKH]-G-[FL]-[IL]-x(6,7)-[DER]-[LIVM]-[FQ]-x-H-x-[STKR]-x-[LIVMFYC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 179 in 168 different sequences
Number of true positive hits 178 in 167 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 1
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 99.44 %
Recall (true positives / (true positives + false negatives)) 99.44 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
167 sequences

CAPA_PSEFR  (P72188), CAPB_PSEFR  (P0A106), CAPB_PSESM  (P0A105), 
CHSP1_HUMAN (Q9Y2V2), CHSP1_MOUSE (Q9CR86), CHSP1_RAT   (Q9WU49), 
CSDC2_HUMAN (Q9Y534), CSDC2_MOUSE (Q91YQ3), CSDC2_RAT   (Q63430), 
CSDE1_HUMAN (O75534), CSDE1_MOUSE (Q91W50), CSDE1_RAT   (P18395), 
CSP1_ARATH  (O65639), CSP1_LACPL  (P71478), CSP2_ARATH  (Q41188), 
CSP2_LACPL  (P96349), CSP3_ARATH  (Q94C69), CSP4_ARATH  (Q38896), 
CSP7_STRCL  (Q01761), CSPA_AERHY  (Q44078), CSPA_AERSA  (Q44317), 
CSPA_BACAN  (Q81TW8), CSPA_BACCE  (Q45096), CSPA_BACCR  (Q81GQ6), 
CSPA_BORBR  (P0A353), CSPA_BORPA  (P0A354), CSPA_BORPE  (P0A352), 
CSPA_CITFR  (Q46051), CSPA_ECO57  (P0A9Y1), CSPA_ECOL6  (P0A9Y0), 
CSPA_ECOLI  (P0A9X9), CSPA_KLEAK  (Q46664), CSPA_KLEPN  (Q48493), 
CSPA_LISIN  (P0A356), CSPA_LISMO  (P0A355), CSPA_MICLC  (O30875), 
CSPA_MYCBO  (P63849), CSPA_MYCS2  (A0R5E1), CSPA_MYCTO  (P9WP74), 
CSPA_MYCTU  (P9WP75), CSPA_PHOLD  (Q51929), CSPA_PHOPO  (Q52287), 
CSPA_PSEAE  (P95459), CSPA_RHIME  (Q9Z3S6), CSPA_RICBR  (Q1RHK6), 
CSPA_RICCN  (Q92GV1), CSPA_RICFE  (Q4UMU5), CSPA_RICPR  (Q9ZCP9), 
CSPA_RICTY  (Q68W69), CSPA_SALEN  (P0A9Y5), CSPA_SALTI  (P0A9Y3), 
CSPA_SALTY  (P0A9Y2), CSPA_SALVI  (Q56178), CSPA_SHEVD  (Q9S1B7), 
CSPA_SHIBO  (Q53816), CSPA_SHIFL  (P0A9Y4), CSPA_STAA3  (Q2FH36), 
CSPA_STAA8  (Q2FYN2), CSPA_STAAB  (Q2YY16), CSPA_STAAC  (Q5HG18), 
CSPA_STAAM  (Q7A2R8), CSPA_STAAN  (Q7A5P3), CSPA_STAAR  (Q6GH06), 
CSPA_STAAS  (Q6G9F9), CSPA_STAAW  (Q7A0X3), CSPA_STAEQ  (Q5HPE0), 
CSPA_STAES  (Q8CP90), CSPA_STAHJ  (Q4L6A7), CSPA_STAS1  (Q49XK3), 
CSPA_STIAD  (P72366), CSPA_STRDY  (Q53984), CSPA_STRP1  (P0C0F1), 
CSPA_STRP3  (P0DA48), CSPA_STRP6  (Q5X9L4), CSPA_STRP8  (P0A361), 
CSPA_STRPQ  (P0DA49), CSPA_STRPY  (P0C0F0), CSPA_VIBCH  (Q9KN00), 
CSPA_YEREN  (Q56922), CSPB_BACCE  (Q45097), CSPB_BACCL  (P41016), 
CSPB_BACSU  (P32081), CSPB_ECOLI  (P36995), CSPB_GEOSE  (P42016), 
CSPB_LISIN  (P0A358), CSPB_LISMO  (P0A357), CSPB_SPOGL  (P41018), 
CSPB_YEREN  (P0A363), CSPB_YERPE  (P0A362), CSPC_BACAN  (P62169), 
CSPC_BACCE  (P62170), CSPC_BACCR  (P62171), CSPC_BACSU  (P39158), 
CSPC_BUCAI  (P57407), CSPC_ECO57  (P0A9Y8), CSPC_ECOL6  (P0A9Y7), 
CSPC_ECOLI  (P0A9Y6), CSPC_ECOLW  (E0J500), CSPC_SALTI  (P0A9Z0), 
CSPC_SALTY  (P0A9Y9), CSPC_SHIFL  (Q83RI9), CSPD_BACAN  (Q81K90), 
CSPD_BACCE  (Q45099), CSPD_BACCR  (Q816H3), CSPD_BACSU  (P51777), 
CSPD_ECO57  (P0A970), CSPD_ECOL6  (P0A969), CSPD_ECOLI  (P0A968), 
CSPD_HAEIN  (P46449), CSPD_SHIFL  (P0A971), CSPD_VIBCH  (Q9KSW4), 
CSPE_BACAN  (Q81QK2), CSPE_BACCE  (Q45100), CSPE_BACCR  (Q81DK5), 
CSPE_BUCAI  (P63237), CSPE_BUCAP  (P63238), CSPE_BUCBP  (Q89A90), 
CSPE_ECO57  (P0A974), CSPE_ECOL6  (P0A973), CSPE_ECOLI  (P0A972), 
CSPE_ECOLW  (E0J1Q3), CSPE_SHIFL  (P0A975), CSPF_ECOL6  (P0A977), 
CSPF_ECOLI  (P0A976), CSPF_STRCO  (P48859), CSPG_ECO57  (P0A980), 
CSPG_ECOL6  (P0A979), CSPG_ECOLI  (P0A978), CSPG_SHEVD  (Q9S170), 
CSPG_SHIFL  (P0A981), CSPH_ECO57  (P0A984), CSPH_ECOL6  (P0A983), 
CSPH_ECOLI  (P0A982), CSPH_SALTI  (P0A1E0), CSPH_SALTY  (P0A1D9), 
CSPH_SHIFL  (P0A985), CSPI_ECOL6  (P0A987), CSPI_ECOLI  (P0A986), 
CSPJ_SALTI  (P58726), CSPJ_SALTS  (E1WGN1), CSPJ_SALTY  (P0CL01), 
CSP_AQUAE   (O67327), CSP_ARTGO   (P54584), CSP_THEMA   (O54310), 
GRP2_NICSY  (P27484), TAPA_PSEFR  (P72191), TAPB_PSEFR  (P72192), 
UNR_DROME   (B7Z0E2), Y4CH_SINFN  (P55390), Y9705_DROME (Q9VVA0), 
YB3_XENLA   (Q00436), YBOX1_BOVIN (P67808), YBOX1_CHICK (Q06066), 
YBOX1_DANRE (B5DE31), YBOX1_HUMAN (P67809), YBOX1_MOUSE (P62960), 
YBOX1_RABIT (Q28618), YBOX1_RAT   (P62961), YBOX1_XENLA (P21573), 
YBOX2_HUMAN (Q9Y2T7), YBOX2_MOUSE (Q9Z2C8), YBOX3_HUMAN (P16989), 
YBOX3_MOUSE (Q9JKB3), YBOX3_RAT   (Q62764), YBOXH_APLCA (P41824), 
YBX2A_XENLA (P21574), YBX2B_XENLA (P45441)
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

CS72_SALH5  (P0DV90)

		
UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

CSDE1_CAVPO (P29174), CSPS_STRTR  (P81622)

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

DSBB_BLOPB  (Q492M6)

		
PDB
[Detailed view]
53 PDB

1C9O; 1CSP; 1CSQ; 1G6P; 1H95; 1HZ9; 1HZA; 1HZB; 1HZC; 1I5F; 1MJC; 1NMF; 1NMG; 1WFQ; 1X65; 2ES2; 2F52; 2HAX; 2I5L; 2I5M; 2L15; 2LXJ; 2LXK; 2YTX; 2YTY; 3AQQ; 3MEF; 3PF4; 3PF5; 4QQB; 5JX4; 5YTS; 5YTT; 5YTV; 5YTX; 6A6J; 6A6L; 6KTC; 6KUG; 6LMR; 6LMS; 6SZZ; 6T00; 6Y4H; 6Y6E; 6Y6M; 7F3I; 7F3J; 7F3K; 7F3L; 7ZHH; 7ZHR; 8H1I
» more