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| Entry: PS00352 |
General information about the entry
| Entry name [info] | CSD_1 |
| Accession [info] | PS00352 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00304 |
Name and characterization of the entry
| Description [info] | Cold-shock (CSD) domain signature. |
| Pattern [info] |
[FYKH]-G-[FL]-[IL]-x(6,7)-[DER]-[LIVM]-[FQ]-x-H-x-[STKR]-x-[LIVMFYC]. |
Numerical results [info]
| Total number of hits | 176 in 167 different sequences |
| Number of true positive hits | 175 in 166 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 2 |
| Precision (true positives / (true positives + false positives)) | 99.43 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 4 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
166 sequences
CAPA_PSEFR (P72188 ), CAPB_PSEFR (P0A106 ), CAPB_PSESM (P0A105 ), CHSP1_HUMAN (Q9Y2V2 ), CHSP1_MOUSE (Q9CR86 ), CHSP1_RAT (Q9WU49 ), CSDC2_HUMAN (Q9Y534 ), CSDC2_MOUSE (Q91YQ3 ), CSDC2_RAT (Q63430 ), CSDE1_HUMAN (O75534 ), CSDE1_MOUSE (Q91W50 ), CSDE1_RAT (P18395 ), CSP1_ARATH (O65639 ), CSP1_LACPL (P71478 ), CSP2_ARATH (Q41188 ), CSP2_LACPL (P96349 ), CSP3_ARATH (Q94C69 ), CSP4_ARATH (Q38896 ), CSP7_STRCL (Q01761 ), CSPA_AERHY (Q44078 ), CSPA_AERSA (Q44317 ), CSPA_BACAN (Q81TW8 ), CSPA_BACCE (Q45096 ), CSPA_BACCR (Q81GQ6 ), CSPA_BORBR (P0A353 ), CSPA_BORPA (P0A354 ), CSPA_BORPE (P0A352 ), CSPA_CITFR (Q46051 ), CSPA_ECO57 (P0A9Y1 ), CSPA_ECOL6 (P0A9Y0 ), CSPA_ECOLI (P0A9X9 ), CSPA_KLEAK (Q46664 ), CSPA_KLEPN (Q48493 ), CSPA_LISIN (P0A356 ), CSPA_LISMO (P0A355 ), CSPA_MICLC (O30875 ), CSPA_MYCBO (P63849 ), CSPA_MYCS2 (A0R5E1 ), CSPA_MYCTO (P9WP74 ), CSPA_MYCTU (P9WP75 ), CSPA_PHOLD (Q51929 ), CSPA_PHOPO (Q52287 ), CSPA_PSEAE (P95459 ), CSPA_RHIME (Q9Z3S6 ), CSPA_RICBR (Q1RHK6 ), CSPA_RICCN (Q92GV1 ), CSPA_RICFE (Q4UMU5 ), CSPA_RICPR (Q9ZCP9 ), CSPA_RICTY (Q68W69 ), CSPA_SALEN (P0A9Y5 ), CSPA_SALTI (P0A9Y3 ), CSPA_SALTY (P0A9Y2 ), CSPA_SALVI (Q56178 ), CSPA_SHEVD (Q9S1B7 ), CSPA_SHIBO (Q53816 ), CSPA_SHIFL (P0A9Y4 ), CSPA_STAA3 (Q2FH36 ), CSPA_STAA8 (Q2FYN2 ), CSPA_STAAB (Q2YY16 ), CSPA_STAAC (Q5HG18 ), CSPA_STAAM (Q7A2R8 ), CSPA_STAAN (Q7A5P3 ), CSPA_STAAR (Q6GH06 ), CSPA_STAAS (Q6G9F9 ), CSPA_STAAW (Q7A0X3 ), CSPA_STAEQ (Q5HPE0 ), CSPA_STAES (Q8CP90 ), CSPA_STAHJ (Q4L6A7 ), CSPA_STAS1 (Q49XK3 ), CSPA_STIAD (P72366 ), CSPA_STRDY (Q53984 ), CSPA_STRP1 (P0C0F1 ), CSPA_STRP3 (P0DA48 ), CSPA_STRP6 (Q5X9L4 ), CSPA_STRP8 (P0A361 ), CSPA_STRPQ (P0DA49 ), CSPA_STRPY (P0C0F0 ), CSPA_VIBCH (Q9KN00 ), CSPA_YEREN (Q56922 ), CSPB_BACCE (Q45097 ), CSPB_BACCL (P41016 ), CSPB_BACSU (P32081 ), CSPB_ECOLI (P36995 ), CSPB_GEOSE (P42016 ), CSPB_LISIN (P0A358 ), CSPB_LISMO (P0A357 ), CSPB_SPOGL (P41018 ), CSPB_YEREN (P0A363 ), CSPB_YERPE (P0A362 ), CSPC_BACAN (P62169 ), CSPC_BACCE (P62170 ), CSPC_BACCR (P62171 ), CSPC_BACSU (P39158 ), CSPC_BUCAI (P57407 ), CSPC_ECO57 (P0A9Y8 ), CSPC_ECOL6 (P0A9Y7 ), CSPC_ECOLI (P0A9Y6 ), CSPC_ECOLW (E0J500 ), CSPC_SALTI (P0A9Z0 ), CSPC_SALTY (P0A9Y9 ), CSPC_SHIFL (Q83RI9 ), CSPD_BACAN (Q81K90 ), CSPD_BACCE (Q45099 ), CSPD_BACCR (Q816H3 ), CSPD_BACSU (P51777 ), CSPD_ECO57 (P0A970 ), CSPD_ECOL6 (P0A969 ), CSPD_ECOLI (P0A968 ), CSPD_HAEIN (P46449 ), CSPD_SHIFL (P0A971 ), CSPD_VIBCH (Q9KSW4 ), CSPE_BACAN (Q81QK2 ), CSPE_BACCE (Q45100 ), CSPE_BACCR (Q81DK5 ), CSPE_BUCAI (P63237 ), CSPE_BUCAP (P63238 ), CSPE_BUCBP (Q89A90 ), CSPE_ECO57 (P0A974 ), CSPE_ECOL6 (P0A973 ), CSPE_ECOLI (P0A972 ), CSPE_ECOLW (E0J1Q3 ), CSPE_SHIFL (P0A975 ), CSPF_ECOL6 (P0A977 ), CSPF_ECOLI (P0A976 ), CSPF_STRCO (P48859 ), CSPG_ECO57 (P0A980 ), CSPG_ECOL6 (P0A979 ), CSPG_ECOLI (P0A978 ), CSPG_SHEVD (Q9S170 ), CSPG_SHIFL (P0A981 ), CSPH_ECO57 (P0A984 ), CSPH_ECOL6 (P0A983 ), CSPH_ECOLI (P0A982 ), CSPH_SALTI (P0A1E0 ), CSPH_SALTY (P0A1D9 ), CSPH_SHIFL (P0A985 ), CSPI_ECOL6 (P0A987 ), CSPI_ECOLI (P0A986 ), CSPJ_SALTI (P58726 ), CSPJ_SALTS (E1WGN1 ), CSPJ_SALTY (P0CL01 ), CSP_AQUAE (O67327 ), CSP_ARTGO (P54584 ), CSP_THEMA (O54310 ), GRP2_NICSY (P27484 ), TAPA_PSEFR (P72191 ), TAPB_PSEFR (P72192 ), Y4CH_SINFN (P55390 ), Y9705_DROME (Q9VVA0 ), YB3_XENLA (Q00436 ), YBOX1_BOVIN (P67808 ), YBOX1_CHICK (Q06066 ), YBOX1_DANRE (B5DE31 ), YBOX1_HUMAN (P67809 ), YBOX1_MOUSE (P62960 ), YBOX1_RABIT (Q28618 ), YBOX1_RAT (P62961 ), YBOX1_XENLA (P21573 ), YBOX2_HUMAN (Q9Y2T7 ), YBOX2_MOUSE (Q9Z2C8 ), YBOX3_HUMAN (P16989 ), YBOX3_MOUSE (Q9JKB3 ), YBOX3_RAT (Q62764 ), YBOXH_APLCA (P41824 ), YBX2A_XENLA (P21574 ), YBX2B_XENLA (P45441 )» more
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| UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
CSDE1_CAVPO (P29174 ), CSPS_STRTR (P81622 ) |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
DSBB_BLOPB (Q492M6 ) |
| PDB [Detailed view] |
38 PDB
1C9O; 1CSP; 1CSQ; 1G6P; 1H95; 1HZ9; 1HZA; 1HZB; 1HZC; 1I5F; 1MJC; 1NMF; 1NMG; 1WFQ; 1X65; 2ES2; 2F52; 2HAX; 2I5L; 2I5M; 2L15; 2LXJ; 2LXK; 2YTX; 2YTY; 3AQQ; 3MEF; 3PF4; 3PF5; 5JX4; 5YTS; 5YTT; 5YTV; 5YTX; 6A6J; 6A6L; 6KTC; 6KUG » more |
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