PROSITE entry PS00353
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General information about the entry
| Entry name [info] | HMG_BOX_1 |
| Accession [info] | PS00353 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00305 |
Name and characterization of the entry
| Description [info] | HMG box A DNA-binding domain signature. |
| Pattern [info] |
[FI]-S-[KR]-K-C-x-[EK]-R-W-K-T-[MV]. |
Numerical results [info]
| Total number of hits | 25 in 25 different sequences |
| Number of true positive hits | 25 in 25 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 29 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 46.30 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
25 sequences
HMG2_DROME (Q24537), HMGB1_BOVIN (P10103), HMGB1_CALJA (B0CM99), HMGB1_CANLF (Q6YKA4), HMGB1_CHICK (Q9YH06), HMGB1_CRIGR (P07156), HMGB1_HORSE (Q08IE6), HMGB1_HUMAN (P09429), HMGB1_MACFA (Q4R844), HMGB1_MOUSE (P63158), HMGB1_PAPAN (A9RA84), HMGB1_PIG (P12682), HMGB1_PLEMO (B1MTB0), HMGB1_RAT (P63159), HMGB2_BOVIN (P40673), HMGB2_CHICK (P26584), HMGB2_HUMAN (P26583), HMGB2_MOUSE (P30681), HMGB2_PIG (P17741), HMGB2_RAT (P52925), HMGB3_BOVIN (Q32L31), HMGB3_CHICK (P40618), HMGB3_HUMAN (O15347), HMGB3_MOUSE (O54879), HMGT_ONCMY (P07746)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
29 sequences
HGB1A_HUMAN (B2RPK0), HM20A_CHICK (Q5ZKF4), HM20A_HUMAN (Q9NP66), HM20A_MOUSE (Q9DC33), HM20A_XENLA (Q6AZF8), HM20A_XENTR (Q6DIJ5), HM20B_BOVIN (Q32L68), HM20B_HUMAN (Q9P0W2), HM20B_MOUSE (Q9Z104), HMGB4_BOVIN (Q32L34), HMGB4_HUMAN (Q8WW32), HMGB4_MOUSE (Q6P8W9), HMO1_YEAST (Q03973), MATA2_CANAL (Q71U11), MATA2_KLULA (Q9HG13), MATA2_YARLL (O93958), MATB_NEUCS (P36981), MATD_NEUCR (Q10116), NHP10_YEAST (Q03435), SMCE1_HUMAN (Q969G3), SMCE1_MOUSE (O54941), SMCE1_RAT (Q56A18), SOX21_MOUSE (Q811W0), TOX3_HUMAN (O15405), TOX3_MOUSE (Q80W03), TOX3_RAT(B7SBD2), TOX_HUMAN (O94900), TOX_MOUSE (Q66JW3), VF401_IIV3 (Q196Z2)» more |
| PDB [Detailed view] |
21 PDB
1AAB; 1CKT; 1J3X; 2EQZ; 2LY4; 2RTU; 2YRQ; 4QR9; 5ZDZ; 5ZE0; 5ZE1; 5ZE2; 6CG0; 6CIJ; 6CIK; 6CIL; 6CIM; 6OEM; 6OEN; 6OEO; 6OER » more |