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Entry: PS00353 |
Entry name [info] | HMG_BOX_1 |
Accession [info] | PS00353 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00305 |
Description [info] | HMG box A DNA-binding domain signature. |
Pattern [info] |
[FI]-S-[KR]-K-C-x-[EK]-R-W-K-T-[MV]. |
Total number of hits | 25 in 25 different sequences |
Number of true positive hits | 25 in 25 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 29 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 46.30 % |
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
25 sequences
HMG2_DROME (Q24537 ), HMGB1_BOVIN (P10103 ), HMGB1_CALJA (B0CM99 ), HMGB1_CANLF (Q6YKA4 ), HMGB1_CHICK (Q9YH06 ), HMGB1_CRIGR (P07156 ), HMGB1_HORSE (Q08IE6 ), HMGB1_HUMAN (P09429 ), HMGB1_MACFA (Q4R844 ), HMGB1_MOUSE (P63158 ), HMGB1_PAPAN (A9RA84 ), HMGB1_PIG (P12682 ), HMGB1_PLEMO (B1MTB0 ), HMGB1_RAT (P63159 ), HMGB2_BOVIN (P40673 ), HMGB2_CHICK (P26584 ), HMGB2_HUMAN (P26583 ), HMGB2_MOUSE (P30681 ), HMGB2_PIG (P17741 ), HMGB2_RAT (P52925 ), HMGB3_BOVIN (Q32L31 ), HMGB3_CHICK (P40618 ), HMGB3_HUMAN (O15347 ), HMGB3_MOUSE (O54879 ), HMGT_ONCMY (P07746 )» more
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UniProtKB/Swiss-Prot False negative sequences |
29 sequences
HGB1A_HUMAN (B2RPK0 ), HM20A_CHICK (Q5ZKF4 ), HM20A_HUMAN (Q9NP66 ), HM20A_MOUSE (Q9DC33 ), HM20A_XENLA (Q6AZF8 ), HM20A_XENTR (Q6DIJ5 ), HM20B_BOVIN (Q32L68 ), HM20B_HUMAN (Q9P0W2 ), HM20B_MOUSE (Q9Z104 ), HMGB4_BOVIN (Q32L34 ), HMGB4_HUMAN (Q8WW32 ), HMGB4_MOUSE (Q6P8W9 ), HMO1_YEAST (Q03973 ), MATA2_CANAL (Q71U11 ), MATA2_KLULA (Q9HG13 ), MATA2_YARLL (O93958 ), MATB_NEUCS (P36981 ), MATD_NEUCR (Q10116 ), NHP10_YEAST (Q03435 ), SMCE1_HUMAN (Q969G3 ), SMCE1_MOUSE (O54941 ), SMCE1_RAT (Q56A18 ), SOX21_MOUSE (Q811W0 ), TOX3_HUMAN (O15405 ), TOX3_MOUSE (Q80W03 ), TOX3_RAT (B7SBD2 ), TOX_HUMAN (O94900 ), TOX_MOUSE (Q66JW3 ), VF401_IIV3 (Q196Z2 )» more |
PDB [Detailed view] |
21 PDB
1AAB; 1CKT; 1J3X; 2EQZ; 2LY4; 2RTU; 2YRQ; 4QR9; 5ZDZ; 5ZE0; 5ZE1; 5ZE2; 6CG0; 6CIJ; 6CIK; 6CIL; 6CIM; 6OEM; 6OEN; 6OEO; 6OER » more |