PROSITE entry PS00356
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General information about the entry
| Entry name [info] | HTH_LACI_1 |
| Accession [info] | PS00356 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-NOV-1995 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00366 |
Name and characterization of the entry
| Description [info] | LacI-type HTH domain signature. |
| Pattern [info] |
[LIVM]-x-[DE]-[LIVM]-A-x(2)-[STAGV]-x-V-[GSTP]-x(2)-[STAG]-[LIVMA]-x(2)- [LIVMFYAN]-[LIVMC]. |
Numerical results [info]
| Total number of hits | 185 in 185 different sequences |
| Number of true positive hits | 179 in 179 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 6 in 6 different sequences |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 96.76 % |
| Recall (true positives / (true positives + false negatives)) | 94.21 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
179 sequences
ASCG_ECOLI (P24242), CCPA_BACSU (P25144), CCPA_PRIMG (P46828), CCPA_STAAC (Q5HF38), CCPA_STAAM (P67655), CCPA_STAAN (P99175), CCPA_STAAR (Q6GFX2), CCPA_STAAS (Q6G8J1), CCPA_STAAW (Q8NW33), CCPA_STAEQ (Q5HNH3), CCPA_STAES (Q8CNV8), CCPA_STAXY (Q56194), CCPA_STRMU (O07329), CCPB_BACSU (P37517), CRA_ECO57 (P0ACP3), CRA_ECOL6 (P0ACP2), CRA_ECOLI (P0ACP1), CRA_SALTI (P0A2P9), CRA_SALTY (P0A2P8), CRA_SHIFL (P0ACP4), CSCR_ECOLX (P62604), CSCR_SHIFL (P62572), CYTR_ECO57 (P0ACN9), CYTR_ECOL6 (P0ACN8), CYTR_ECOLI (P0ACN7), CYTR_SHIFL (P0ACP0), DEGA_BACSU (P37947), EBGR_ECOLI (P06846), ENDR_PAEPO (P27871), EXUR_BACSU (Q9JMQ1), FRUR_VIBCH (Q9KM69), GALR_ECOLI (P03024), GALR_HAEIN (P31766), GALR_LACCA (O84905), GALR_SALTS (E1WAQ4), GALR_SALTY (P0CL11), GALR_STRTR (Q9ZB11), GALS_ECOLI (P25748), GALS_SALTY (P41030), GLK_BURL3 (Q39IQ1), GLK_BURO1 (Q1BYA7), GLK_BURP1 (Q3JPP0), GLK_BURPS (Q63RQ7), GLK_BURTA (Q2SYA5), GLK_PARXL (Q143F8), GNTR_ECOL6 (P0ACP6), GNTR_ECOLI (P0ACP5), GNTR_PSEAE (Q9I1F6), IDNR_ECOLI (P39343), IRRE_DEIDV (C1CZ84), IRRE_DEIRA (Q9RXY7), KDGR_BACSU (P50844), LACI_ECOLI (P03023), LACI_KLEPN (P06220), MALI_ECOLI (P18811), MALI_VIBFU (P96158), MALR_CLOBU (O05103), MALR_STAXY (Q56201), MALR_STRCO (P72396), MALR_STRPN (P0A4T1), MALR_STRR6 (P0A4T2), MELR_BACSU (O34829), NFXB_PSEAE (P32265), PEPR_LACDL (Q48544), PTXS_PSEDL (A0A167V873), PTXS_PSEPK (Q88HH7), PURR_ACTP2 (A3N0H9), PURR_ACTP7 (B3H1F6), PURR_ACTPJ (B0BP99), PURR_ACTSZ (A6VNL0), PURR_ALIF1 (Q5E4H9), PURR_ALIFM (B5FF00), PURR_ALISL (B6EH86), PURR_CROS8 (A7MFD3), PURR_ECO24 (A7ZMC4), PURR_ECO27 (B7URZ9), PURR_ECO45 (B7MA12), PURR_ECO55 (B7L5L1), PURR_ECO57 (P0ACP8), PURR_ECO5E (B5Z492), PURR_ECO7I (B7NTX5), PURR_ECO81 (B7MVD4), PURR_ECO8A (B7M0L5), PURR_ECOBW (C4ZYC2), PURR_ECOHS (A8A0K5), PURR_ECOK1 (A1ABJ9), PURR_ECOL5 (Q0THG9), PURR_ECOL6 (Q8FH72), PURR_ECOLC (B1IQ96), PURR_ECOLI (P0ACP7), PURR_ECOLU (B7NBB1), PURR_ECOSE (B6IB98), PURR_ECOSM (B1LEM6), PURR_ECOUT (Q1RBD7), PURR_EDWI9 (C5BE45), PURR_ERWT9 (B2VEM5), PURR_ESCF3 (B7LQA9), PURR_GLAP5 (B8F4D0), PURR_HAEDU (Q7VL44), PURR_HAEI8 (Q4QL70), PURR_HAEIE (A5UCM9), PURR_HAEIG (A5UIZ0), PURR_HAEIN (P46456), PURR_HAES1 (Q0I4B4), PURR_HISS2 (B0UUN7), PURR_KLEP3 (B5XWL8), PURR_KLEP7 (A6TA06), PURR_MANSM (Q65TP0), PURR_PASMU (Q9CN88), PURR_PECAS (Q6D5W3), PURR_PECCP (C6DK36), PURR_PHOLL (Q7N3V8), PURR_PHOPR (Q6LQB9), PURR_PROMH (B4EWM9), PURR_SALA4 (B5F6L7), PURR_SALAR (A9MEJ1), PURR_SALCH (Q57PK6), PURR_SALDC (B5FIH3), PURR_SALEP (B5QV29), PURR_SALG2 (B5RAM9), PURR_SALHS (B4TH70), PURR_SALNS (B4T567), PURR_SALPA (Q5PH15), PURR_SALPB (A9N0Y2), PURR_SALPC (C0Q5V2), PURR_SALPK (B5BKD9), PURR_SALSV (B4TUY8), PURR_SALTI (Q8Z6P1), PURR_SALTY (O68446), PURR_SERP5 (A8GDV6), PURR_SHIB3 (B2U2G3), PURR_SHIBS (Q321B7), PURR_SHIDS (Q32FB3), PURR_SHIF8 (Q0T4B4), PURR_SHIFL (P0ACP9), PURR_SHISS (Q3Z213), PURR_VIBA3 (B7VMG4), PURR_VIBC1 (A7N1L2), PURR_VIBC3 (A5F7H0), PURR_VIBCH (Q9KRC1), PURR_VIBCM (C3LN44), PURR_VIBPA (Q87QW9), PURR_VIBVU (Q8DAQ5), PURR_VIBVY (Q7MJ57), PURR_YERE8 (A1JP52), PURR_YERP3 (A7FHK2), PURR_YERPA (Q1C774), PURR_YERPB (B2K5I4), PURR_YERPE (Q7CIS2), PURR_YERPG (A9QZB3), PURR_YERPN (Q1CIL0), PURR_YERPP (A4TIQ4), PURR_YERPS (Q66A32), PURR_YERPY (B1JJ59), RBSR_BACSU (P36944), RBSR_ECO57 (P0ACQ2), RBSR_ECOL6 (P0ACQ1), RBSR_ECOLI (P0ACQ0), RBSR_HAEIN (P44329), RBSR_HALH5 (Q9K6K2), RBSR_PASMU (Q9CPA2), RBSR_SHIFL (P0ACQ3), RBTR_KLEAE (P07760), REG1_STRLI (P72469), REGA_CLOAB (P58258), REGA_CLOSA (Q45831), SACR_LACLL (Q04939), SCRR_KLEPN (P37076), SCRR_PEDPE (P43472), SCRR_SALTM (P37077), SCRR_STAXY (P74892), SCRR_STRMU (Q54430), SCRR_VIBAL (P24508), TRER_ECOLI (P36673), TRER_SALTY (P36674), YAML_STRLM (P23823), YCJW_ECOLI (P77615), YKVZ_BACSU (O31690), YVDE_BACSU (O06987)» more
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| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
AGLR_RHIME (Q9Z3R4), CELR_THEFU (O87590), GANR_BACSU (O07008), IPSA_CORGL (Q8NMF0), LACR_LACHE (Q7WTB0), NTDR_BACSU (O07567), PECTR_LACP7 (A9KNI6), PTXS_PSEAE (G3XD97), RAFR_ECOLX (P21867), RBSR_LACLA (Q9CF41), Y4158_STRCO (Q05954)» more |
| UniProtKB/Swiss-Prot False positive sequences |
6 sequences
LOGH_MYCMM (B2HS63), MDH_BACTN (Q8A0W0), RPOB_GRAFK (A0M3Y9), S29A3_BOVIN (A1A4N1), Y1018_STRA3 (P67251), Y983_STRA5 (P67252)» more |
| PDB [Detailed view] |
60 PDB
1BDH; 1BDI; 1CJG; 1EFA; 1JFS; 1JFT; 1JH9; 1JWL; 1JYE; 1JYF; 1L1M; 1LBG; 1LBH; 1LBI; 1LCC; 1LCD; 1LQC; 1OSL; 1PNR; 1PRU; 1PRV; 1QP0; 1QP4; 1QP7; 1QPZ; 1QQA; 1QQB; 1RZR; 1UXC; 1UXD; 1VPW; 1WET; 1ZAY; 1ZVV; 2BJC; 2HSG; 2JCG; 2KEI; 2KEJ; 2KEK; 2LCV; 2PE5; 2PUA; 2PUB; 2PUC; 2PUD; 2PUE; 2PUF; 2PUG; 3DBI; 3DTE; 3DTI; 3DTK; 3EDC; 3OQM; 3OQN; 3OQO; 4RZS; 4RZT; 7E5W » more |