Home  |  Contact
Entry: PS00380

General information about the entry

Entry name [info] RHODANESE_1
Accession [info] PS00380
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-JUL-1998 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00322

Name and characterization of the entry

Description [info] Rhodanese signature 1.
Pattern [info] 
[FY]-x(3)-H-[LIV]-P-G-A-x(2)-[LIVF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 30 in 30 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 31
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 93.75 %
Recall (true positives / (true positives + false negatives)) 49.18 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 30 sequences 

GLPE_EDWI9  (C5B970    ), GLPE_PECAS  (Q6CZL2    ), GLPE_PECCP  (C6DH73    ), 

STR2_ARATH  (Q24JL3    ), THT2_MYCBO  (Q7TWT6    ), THT2_MYCLE  (P46700    ), 
THT2_MYCTO  (P9WHF6    ), THT2_MYCTU  (P9WHF7    ), THT3_MYCTO  (P9WHF4    ), 
THT3_MYCTU  (P9WHF5    ), THTM_ECO57  (P58388    ), THTM_ECOLI  (P31142    ), 
THTM_HUMAN  (P25325    ), THTM_MOUSE  (Q99J99    ), THTM_RAT    (P97532    ), 
THTR_AZOVI  (P52197    ), THTR_BOVIN  (P00586    ), THTR_CHICK  (P25324    ), 
THTR_CORGL  (P71121    ), THTR_CRIGR  (P46635    ), THTR_DEIRA  (Q9RXT9    ), 
THTR_HUMAN  (Q16762    ), THTR_METTH  (O26719    ), THTR_MOUSE  (P52196    ), 
THTR_PSEAE  (Q9HUK9    ), THTR_RAT    (P24329    ), THTR_SACER  (P16385    ), 
THTR_SYNE7  (P27477    ), TTUD_THET2  (Q72JV2    ), YNJE_ECOLI  (P78067    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 31 sequences 

ACR21_ORYSJ (Q336V5    ), ACR22_ORYSJ (Q10SX6    ), CAS_ARATH   (Q9FN48    ), 

CDC25_ARATH (Q8GY31    ), HARC1_ARATH (Q8RUD6    ), MOCS3_ARATH (Q9ZNW0    ), 
RHODA_ALLVD (D3RPB9    ), STR10_ARATH (Q9SR92    ), STR11_ARATH (Q0WWT7    ), 
STR12_ARATH (Q93WI0    ), STR14_ARATH (Q94A65    ), STR15_ARATH (Q38853    ), 
STR16_ARATH (Q39129    ), STR17_ARATH (F4IPI4    ), STR18_ARATH (Q9FKW8    ), 
STR1_ARATH  (O64530    ), STR4A_ARATH (Q56XR7    ), STR4_ARATH  (Q9M158    ), 
STR6_ARATH  (Q94AC1    ), STR7_ARATH  (Q1JPN0    ), STR8_ARATH  (F4I933    ), 
STR9_ARATH  (O48529    ), THTM_PSEAE  (Q9I452    ), THTR1_MYCBO (P59989    ), 
THTR2_MYCBO (Q7TX80    ), THTR_HALVD  (D4GYM0    ), THTR_MYCLE  (Q50036    ), 
THTR_MYCS2  (A0R4C9    ), THTR_MYCTO  (P9WHF8    ), THTR_MYCTU  (P9WHF9    ), 
YTWF_BACSU  (O32072    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 2 sequences 

ACCH2_ARATH (Q9C5K7    ), ZN703_DANRE (Q90ZE2    )


				
	

	

		PDB
[Detailed view]		
		
			20 PDB
			


			1BOH; 1BOI; 1DP2; 1E0C; 1H4K; 1H4M; 1ORB; 1RHD; 1RHS; 1URH; 2ORA; 2WLR; 
			
				2WLX; 3HZU; 3IPO; 3IPP; 3OLH; 4JGT; 5WQJ; 5WQK
			
			

			» more

				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission