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Entry: PS00392

General information about the entry

Entry name [info] DDC_GAD_HDC_YDC
Accession [info] PS00392
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE;
13-FEB-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00329

Name and characterization of the entry

Description [info] DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
Pattern [info] 
S-[LIVMFYW]-x-{KG}-x(3)-K-[LIVMFYWGH]-[LIVMFYWG]-x-{R}-x-[LIVMFYW]-{V}-
[CA]-x(2)-[LIVMFYWQ]-{K}-x-[RK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_02 which contains 559'228 sequence entries.


Total number of hits 111 in 111 different sequences
Number of true positive hits 101 in 101 different sequences
Number of 'unknown' hits 0
Number of false positive hits 10 in 10 different sequences
Number of false negative sequences 46
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 90.99 %
Recall (true positives / (true positives + false negatives)) 68.71 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 6
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 101 sequences 

CSAD_MOUSE  (Q9DBE0    ), CSAD_RAT    (Q64611    ), DCE1_BOVIN  (Q0VCA1    ), 

DCE1_CANLF  (A0PA85    ), DCE1_FELCA  (P14748    ), DCE1_HUMAN  (Q99259    ), 
DCE1_MOUSE  (P48318    ), DCE1_PANTR  (Q5IS68    ), DCE1_PIG    (P48319    ), 
DCE1_PONAB  (Q5R7S7    ), DCE1_RAT    (P18088    ), DCE2_CANLF  (Q4PRC2    ), 
DCE2_HUMAN  (Q05329    ), DCE2_MOUSE  (P48320    ), DCE2_PIG    (P48321    ), 
DCE2_RAT    (Q05683    ), DCEA_ECO57  (P58228    ), DCEA_ECOL6  (P69909    ), 
DCEA_ECOLI  (P69908    ), DCEA_SHIFL  (Q83PR1    ), DCEB_ECO57  (P69911    ), 
DCEB_ECOL6  (Q8FHG5    ), DCEB_ECOLI  (P69910    ), DCEB_SHIFL  (P69912    ), 
DCE_DROME   (P20228    ), DCHS_ACIB3  (B7GZJ8    ), DCHS_ACIB5  (B7I459    ), 
DCHS_ACIBC  (B2HVG6    ), DCHS_ACIBT  (A3M7A4    ), DCHS_ACIBY  (B0VBU8    ), 
DCHS_BOVIN  (Q5EA83    ), DCHS_DROME  (Q05733    ), DCHS_HUMAN  (P19113    ), 
DCHS_KLEAE  (P28577    ), DCHS_MORMO  (P05034    ), DCHS_MOUSE  (P23738    ), 
DCHS_PSEE4  (Q1IAK7    ), DCHS_PSEFL  (P95477    ), DCHS_RAOOR  (Q8L0Z4    ), 
DCHS_RAOPL  (P28578    ), DCHS_RAT    (P16453    ), DCHS_SOLLC  (P54772    ), 
DCHS_VIBA7  (Q56581    ), DCHS_VIBCB  (A7MVI6    ), DDC_ACIBA   (Q43908    ), 
DDC_BOVIN   (P27718    ), DDC_CATRO   (P17770    ), DDC_CAVPO   (P22781    ), 
DDC_DROLE   (O96571    ), DDC_DROME   (P05031    ), DDC_DROSI   (O96567    ), 
DDC_HAEIN   (P71362    ), DDC_HUMAN   (P20711    ), DDC_MANSE   (P48861    ), 
DDC_MOUSE   (O88533    ), DDC_PIG     (P80041    ), DDC_RAT     (P14173    ), 
DHAPP_DROLE (O96569    ), DHAPP_DROME (P18486    ), DHAPP_DROSI (P81893    ), 
DHPAA_AEDAE (Q16S21    ), GADL1_BOVIN (A6QM00    ), GADL1_HUMAN (Q6ZQY3    ), 
GADL1_MOUSE (Q80WP8    ), GADL1_XENTR (Q28D99    ), MFNA_ARCFU  (O28275    ), 
MFNA_META3  (A6UVR4    ), MFNA_METLZ  (A2STQ3    ), MFNA_METM5  (A4G060    ), 
MFNA_METM7  (A6VIC0    ), MFNA_METMJ  (A3CWM4    ), MFNA_METMP  (Q6M0Y7    ), 
MFNA_METPE  (B8GDM7    ), MFNA_METS3  (A5ULW4    ), MFNA_METTP  (A0B9M9    ), 
MFNA_METVS  (A6URB4    ), MFNA_PYRAB  (Q9UZD5    ), MFNA_PYRFU  (Q8U1P6    ), 
MFNA_PYRHO  (O58679    ), MFNA_THEGJ  (C5A2X8    ), MFNA_THEKO  (Q5JJ82    ), 
RHBB_RHIME  (Q9Z3R1    ), SDC1_ARATH  (Q9MA74    ), SDC1_ORYSJ  (Q6ESZ9    ), 
SDC2_ORYSJ  (Q8RV06    ), SDC3_ORYSJ  (Q7X8D4    ), TDC1_CAEEL  (Q95ZS2    ), 
TDC1_CAMAC  (P93082    ), TDC1_ORYSJ  (Q6ZJK7    ), TDC2_CAMAC  (P93083    ), 
TDC2_ORYSJ  (Q7XHL3    ), TRPDC_RUMGV (A7B1V0    ), TYDC1_ARATH (Q8RY79    ), 
TYDC1_PAPSO (P54768    ), TYDC1_PETCR (Q06085    ), TYDC2_PAPSO (P54769    ), 
TYDC2_PETCR (Q06086    ), TYDC3_PAPSO (P54770    ), TYDC3_PETCR (Q06087    ), 
TYDC4_PETCR (Q06088    ), TYDC5_PAPSO (P54771    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 46 sequences 

CSAD_HUMAN  (Q9Y600    ), DCE1_ARATH  (Q42521    ), DCE2_ARATH  (Q42472    ), 

DCEA_LISMO  (Q9F5P3    ), DCEB_LISIN  (Q928R9    ), DCEB_LISMO  (Q9EYW9    ), 
DCEC_LISIN  (Q928K4    ), DCEC_LISMO  (Q8Y4K4    ), DCE_LACLA   (Q9CG20    ), 
DCE_LACLM   (O30418    ), DCE_PETHY   (Q07346    ), DCE_SOLLC   (P54767    ), 
DCE_YEAST   (Q04792    ), DCHS_RHILO  (Q98A07    ), DDC_CAEEL   (P34751    ), 
GADA_DICDI  (Q54VQ5    ), GADB_DICDI  (Q54IJ3    ), MFNA_HALMA  (Q5V1B4    ), 
MFNA_HALS3  (B0R349    ), MFNA_HALSA  (Q9HSA3    ), MFNA_METAC  (Q8TUQ9    ), 
MFNA_METAR  (Q0W498    ), MFNA_METB6  (A7IAB9    ), MFNA_METBF  (Q46DU3    ), 
MFNA_METBU  (Q12VA2    ), MFNA_METHJ  (Q2FSD2    ), MFNA_METJA  (Q60358    ), 
MFNA_METKA  (Q8TV92    ), MFNA_METMA  (Q8PXA5    ), MFNA_METST  (Q2NHY7    ), 
MFNA_METTH  (O27188    ), MFNA_NATPD  (Q3IT46    ), PDXD1_HUMAN (Q6P996    ), 
PDXD1_MOUSE (Q99K01    ), PDXD1_XENLA (Q6DF78    ), PDXD2_HUMAN (Q6P474    ), 
SGPL1_HUMAN (O95470    ), SGPL1_MOUSE (Q8R0X7    ), SGPL1_PONAB (Q5R4G0    ), 
SGPL1_RAT   (Q8CHN6    ), SGPL_ARATH  (Q9C509    ), SGPL_CAEEL  (Q9Y194    ), 
SGPL_DROME  (Q9V7Y2    ), SGPL_YEAST  (Q05567    ), TRPDC_CLOS1 (J7SZ64    ), 
TYDC2_ARATH (Q9M0G4    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 10 sequences 

ATG1B_ARATH (F4JBP3    ), CCME_EHRCJ  (Q3YSH2    ), CCME_EHRCR  (Q2GG46    ), 

CCME_EHRRG  (Q5FHG0    ), CCME_EHRRW  (Q5HBM4    ), CH101_VIBCH (Q9KNR6    ), 
HS7C4_DICDI (Q54BD8    ), MMS1_YEAST  (Q06211    ), NUOD_SPHAL  (Q1GTK0    ), 
RMT2_YARLI  (Q6CBX2    )
» more

PDB
[Detailed view]		 18 PDB

1JS3; 1JS6; 1PMM; 1PMO; 1XEY; 2DGK; 2DGL; 2DGM; 3FZ6; 3FZ7; 3FZ8; 3RBF; 3RBL; 3RCH; 4E1O; 4OBU; 4OBV; 6ENZ
» more

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