PROSITE entry PS00392
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PURL: https://purl.expasy.org/prosite/signature/PS00392
Direct ScanProsite submission
General information about the entry
| Entry name [info] | DDC_GAD_HDC_YDC |
| Accession [info] | PS00392 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00329 |
Name and characterization of the entry
| Description [info] | DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. |
| Pattern [info] |
S-[LIVMFYW]-x-{KG}-x(3)-K-[LIVMFYWGH]-[LIVMFYWG]-x-{R}-x-[LIVMFYW]-{V}-
[CA]-x(2)-[LIVMFYWQ]-{K}-x-[RK].
|
Numerical results [info]
| Total number of hits | 119 in 119 different sequences |
| Number of true positive hits | 109 in 109 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 10 in 10 different sequences |
| Number of false negative sequences | 47 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 91.60 % |
| Recall (true positives / (true positives + false negatives)) | 69.87 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | pyridoxal_phosphate at position 6 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
109 sequences
CNSB_PENEN (A0A0A2IDH4), CSAD_MOUSE (Q9DBE0), CSAD_RAT(Q64611), DCE1_BOVIN (Q0VCA1), DCE1_CANLF (A0PA85), DCE1_FELCA (P14748), DCE1_HUMAN (Q99259), DCE1_MOUSE (P48318), DCE1_PANTR (Q5IS68), DCE1_PIG(P48319), DCE1_PONAB (Q5R7S7), DCE1_RAT(P18088), DCE2_CANLF (Q4PRC2), DCE2_HUMAN (Q05329), DCE2_MOUSE (P48320), DCE2_PIG(P48321), DCE2_RAT(Q05683), DCEA_ECO57 (P58228), DCEA_ECOL6 (P69909), DCEA_ECOLI (P69908), DCEA_SHIFL (Q83PR1), DCEB_ECO57 (P69911), DCEB_ECOL6 (Q8FHG5), DCEB_ECOLI (P69910), DCEB_SHIFL (P69912), DCE_DROME (P20228), DCHS_ACIB3 (B7GZJ8), DCHS_ACIB5 (B7I459), DCHS_ACIBC (B2HVG6), DCHS_ACIBT (A3M7A4), DCHS_ACIBY (B0VBU8), DCHS_BOVIN (Q5EA83), DCHS_DROME (Q05733), DCHS_HUMAN (P19113), DCHS_KLEAE (P28577), DCHS_MORMO (P05034), DCHS_MOUSE (P23738), DCHS_PSEE4 (Q1IAK7), DCHS_PSEFL (P95477), DCHS_RAOOR (Q8L0Z4), DCHS_RAOPL (P28578), DCHS_RAT(P16453), DCHS_SOLLC (P54772), DCHS_VIBA7 (Q56581), DCHS_VIBC1 (A7MVI6), DDC_ACIBA (Q43908), DDC_BOVIN (P27718), DDC_CAVPO (P22781), DDC_DROLE (O96571), DDC_DROME (P05031), DDC_DROSI (O96567), DDC_HAEIN (P71362), DDC_HUMAN (P20711), DDC_MANSE (P48861), DDC_MOUSE (O88533), DDC_PIG (P80041), DDC_RAT (P14173), DHAPP_DROLE (O96569), DHAPP_DROME (P18486), DHAPP_DROSI (P81893), DHPAA_AEDAE (Q16S21), GADL1_BOVIN (A6QM00), GADL1_HUMAN (Q6ZQY3), GADL1_MOUSE (Q80WP8), GADL1_XENTR (Q28D99), HPAAS_PETCR (Q06086), MFNA_ARCFU (O28275), MFNA_META3 (A6UVR4), MFNA_METLZ (A2STQ3), MFNA_METM5 (A4G060), MFNA_METM7 (A6VIC0), MFNA_METMJ (A3CWM4), MFNA_METMP (Q6M0Y7), MFNA_METPE (B8GDM7), MFNA_METS3 (A5ULW4), MFNA_METTP (A0B9M9), MFNA_METVS (A6URB4), MFNA_PYRAB (Q9UZD5), MFNA_PYRFU (Q8U1P6), MFNA_PYRHO (O58679), MFNA_THEGJ (C5A2X8), MFNA_THEKO (Q5JJ82), PAAS_ARATH (Q8RY79), PAAS_PETHY (Q0ZQX0), PAAS_ROSHC (Q0ZS27), RHBB_RHIME (Q9Z3R1), SDC1_ARATH (Q9MA74), SDC1_ORYSJ (Q6ESZ9), SDC2_ORYSJ (Q8RV06), SDC3_ORYSJ (Q7X8D4), TDC1_CAEEL (Q95ZS2), TDC1_CAMAC (P93082), TDC1_ORYSJ (Q6ZJK7), TDC2_CAMAC (P93083), TDC2_ORYSJ (Q7XHL3), TDC_CATRO (P17770), TRPDC_MEDG7 (A7B1V0), TYDC1_NARPS (A0A2H5AIY0), TYDC1_PAPSO (P54768), TYDC1_PETCR (Q06085), TYDC2_LOPWI (A0AA51Z3J4), TYDC2_NARPS (A0A2H5AIY2), TYDC2_PAPSO (P54769), TYDC3_PAPSO (P54770), TYDC3_PETCR (Q06087), TYDC4_PETCR (Q06088), TYDC5_PAPSO (P54771), TYDC_PAPSO (O82415), TYRDC_ENTFC (A0A481NV25)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
47 sequences
AADC_BACAT (I0DFJ0), CSAD_HUMAN (Q9Y600), DCE1_ARATH (Q42521), DCE2_ARATH (Q42472), DCEA_LISMO (Q9F5P3), DCEB_LISIN (Q928R9), DCEB_LISMO (Q9EYW9), DCEC_LISIN (Q928K4), DCEC_LISMO (Q8Y4K4), DCE_LACLA (Q9CG20), DCE_LACLM (O30418), DCE_PETHY (Q07346), DCE_SOLLC (P54767), DCE_YEAST (Q04792), DCHS_RHILO (Q98A07), DDC_CAEEL (P34751), GADA_DICDI (Q54VQ5), GADB_DICDI (Q54IJ3), MFNA_HALMA (Q5V1B4), MFNA_HALS3 (B0R349), MFNA_HALSA (Q9HSA3), MFNA_METAC (Q8TUQ9), MFNA_METAR (Q0W498), MFNA_METB6 (A7IAB9), MFNA_METBF (Q46DU3), MFNA_METBU (Q12VA2), MFNA_METHJ (Q2FSD2), MFNA_METJA (Q60358), MFNA_METKA (Q8TV92), MFNA_METMA (Q8PXA5), MFNA_METST (Q2NHY7), MFNA_METTH (O27188), MFNA_NATPD (Q3IT46), PDXD1_HUMAN (Q6P996), PDXD1_MOUSE (Q99K01), PDXD1_XENLA (Q6DF78), PDXD2_HUMAN (Q6P474), SGPL1_HUMAN (O95470), SGPL1_MOUSE (Q8R0X7), SGPL1_PONAB (Q5R4G0), SGPL1_RAT (Q8CHN6), SGPL_ARATH (Q9C509), SGPL_CAEEL (Q9Y194), SGPL_DROME (Q9V7Y2), SGPL_YEAST (Q05567), TRPDC_CLOS1 (J7SZ64), TYDC2_ARATH (Q9M0G4)» more |
| UniProtKB/Swiss-Prot False positive sequences |
10 sequences
ATG1B_ARATH (F4JBP3), CCME_EHRCJ (Q3YSH2), CCME_EHRCR (Q2GG46), CCME_EHRRG (Q5FHG0), CCME_EHRRW (Q5HBM4), CH101_VIBCH (Q9KNR6), HS7C4_DICDI (Q54BD8), MMS1_YEAST (Q06211), NUOD_SPHAL (Q1GTK0), RMT2_YARLI (Q6CBX2)» more |
| PDB [Detailed view] |
42 PDB
pdb_00001js3; pdb_00001js6; pdb_00001pmm; pdb_00001pmo; pdb_00001xey; pdb_00002dgk; pdb_00002dgl; pdb_00002dgm; pdb_00002okj; pdb_00002okk; pdb_00003fz6; pdb_00003fz7; pdb_00003fz8; pdb_00003k40; pdb_00003rbf; pdb_00003rbl; pdb_00003rch; pdb_00003vp6; pdb_00004e1o; pdb_00004obu; pdb_00004obv; pdb_00006eei; pdb_00006eem; pdb_00006eew; pdb_00006enz; pdb_00006jrl; pdb_00006khn; pdb_00006kho; pdb_00006khp; pdb_00006liu; pdb_00006liv; pdb_00006zek; pdb_00007a0a; pdb_00007eiw; pdb_00007eix; pdb_00007eiy; pdb_00007lz6; pdb_00008jg7; pdb_00008or9; pdb_00008ora; pdb_00008x0o; pdb_00008x0p » more |