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Entry: PS00392 |
Entry name [info] | DDC_GAD_HDC_YDC |
Accession [info] | PS00392 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE; 13-FEB-2019 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00329 |
Description [info] | DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. |
Pattern [info] |
S-[LIVMFYW]-x-{KG}-x(3)-K-[LIVMFYWGH]-[LIVMFYWG]-x-{R}-x-[LIVMFYW]-{V}- [CA]-x(2)-[LIVMFYWQ]-{K}-x-[RK]. |
Total number of hits | 111 in 111 different sequences |
Number of true positive hits | 101 in 101 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 10 in 10 different sequences |
Number of false negative sequences | 46 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 90.99 % |
Recall (true positives / (true positives + false negatives)) | 68.71 % |
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | pyridoxal_phosphate at position 6 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
101 sequences
CSAD_MOUSE (Q9DBE0 ), CSAD_RAT (Q64611 ), DCE1_BOVIN (Q0VCA1 ), DCE1_CANLF (A0PA85 ), DCE1_FELCA (P14748 ), DCE1_HUMAN (Q99259 ), DCE1_MOUSE (P48318 ), DCE1_PANTR (Q5IS68 ), DCE1_PIG (P48319 ), DCE1_PONAB (Q5R7S7 ), DCE1_RAT (P18088 ), DCE2_CANLF (Q4PRC2 ), DCE2_HUMAN (Q05329 ), DCE2_MOUSE (P48320 ), DCE2_PIG (P48321 ), DCE2_RAT (Q05683 ), DCEA_ECO57 (P58228 ), DCEA_ECOL6 (P69909 ), DCEA_ECOLI (P69908 ), DCEA_SHIFL (Q83PR1 ), DCEB_ECO57 (P69911 ), DCEB_ECOL6 (Q8FHG5 ), DCEB_ECOLI (P69910 ), DCEB_SHIFL (P69912 ), DCE_DROME (P20228 ), DCHS_ACIB3 (B7GZJ8 ), DCHS_ACIB5 (B7I459 ), DCHS_ACIBC (B2HVG6 ), DCHS_ACIBT (A3M7A4 ), DCHS_ACIBY (B0VBU8 ), DCHS_BOVIN (Q5EA83 ), DCHS_DROME (Q05733 ), DCHS_HUMAN (P19113 ), DCHS_KLEAE (P28577 ), DCHS_MORMO (P05034 ), DCHS_MOUSE (P23738 ), DCHS_PSEE4 (Q1IAK7 ), DCHS_PSEFL (P95477 ), DCHS_RAOOR (Q8L0Z4 ), DCHS_RAOPL (P28578 ), DCHS_RAT (P16453 ), DCHS_SOLLC (P54772 ), DCHS_VIBA7 (Q56581 ), DCHS_VIBCB (A7MVI6 ), DDC_ACIBA (Q43908 ), DDC_BOVIN (P27718 ), DDC_CATRO (P17770 ), DDC_CAVPO (P22781 ), DDC_DROLE (O96571 ), DDC_DROME (P05031 ), DDC_DROSI (O96567 ), DDC_HAEIN (P71362 ), DDC_HUMAN (P20711 ), DDC_MANSE (P48861 ), DDC_MOUSE (O88533 ), DDC_PIG (P80041 ), DDC_RAT (P14173 ), DHAPP_DROLE (O96569 ), DHAPP_DROME (P18486 ), DHAPP_DROSI (P81893 ), DHPAA_AEDAE (Q16S21 ), GADL1_BOVIN (A6QM00 ), GADL1_HUMAN (Q6ZQY3 ), GADL1_MOUSE (Q80WP8 ), GADL1_XENTR (Q28D99 ), MFNA_ARCFU (O28275 ), MFNA_META3 (A6UVR4 ), MFNA_METLZ (A2STQ3 ), MFNA_METM5 (A4G060 ), MFNA_METM7 (A6VIC0 ), MFNA_METMJ (A3CWM4 ), MFNA_METMP (Q6M0Y7 ), MFNA_METPE (B8GDM7 ), MFNA_METS3 (A5ULW4 ), MFNA_METTP (A0B9M9 ), MFNA_METVS (A6URB4 ), MFNA_PYRAB (Q9UZD5 ), MFNA_PYRFU (Q8U1P6 ), MFNA_PYRHO (O58679 ), MFNA_THEGJ (C5A2X8 ), MFNA_THEKO (Q5JJ82 ), RHBB_RHIME (Q9Z3R1 ), SDC1_ARATH (Q9MA74 ), SDC1_ORYSJ (Q6ESZ9 ), SDC2_ORYSJ (Q8RV06 ), SDC3_ORYSJ (Q7X8D4 ), TDC1_CAEEL (Q95ZS2 ), TDC1_CAMAC (P93082 ), TDC1_ORYSJ (Q6ZJK7 ), TDC2_CAMAC (P93083 ), TDC2_ORYSJ (Q7XHL3 ), TRPDC_RUMGV (A7B1V0 ), TYDC1_ARATH (Q8RY79 ), TYDC1_PAPSO (P54768 ), TYDC1_PETCR (Q06085 ), TYDC2_PAPSO (P54769 ), TYDC2_PETCR (Q06086 ), TYDC3_PAPSO (P54770 ), TYDC3_PETCR (Q06087 ), TYDC4_PETCR (Q06088 ), TYDC5_PAPSO (P54771 )» more
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UniProtKB/Swiss-Prot False negative sequences |
46 sequences
CSAD_HUMAN (Q9Y600 ), DCE1_ARATH (Q42521 ), DCE2_ARATH (Q42472 ), DCEA_LISMO (Q9F5P3 ), DCEB_LISIN (Q928R9 ), DCEB_LISMO (Q9EYW9 ), DCEC_LISIN (Q928K4 ), DCEC_LISMO (Q8Y4K4 ), DCE_LACLA (Q9CG20 ), DCE_LACLM (O30418 ), DCE_PETHY (Q07346 ), DCE_SOLLC (P54767 ), DCE_YEAST (Q04792 ), DCHS_RHILO (Q98A07 ), DDC_CAEEL (P34751 ), GADA_DICDI (Q54VQ5 ), GADB_DICDI (Q54IJ3 ), MFNA_HALMA (Q5V1B4 ), MFNA_HALS3 (B0R349 ), MFNA_HALSA (Q9HSA3 ), MFNA_METAC (Q8TUQ9 ), MFNA_METAR (Q0W498 ), MFNA_METB6 (A7IAB9 ), MFNA_METBF (Q46DU3 ), MFNA_METBU (Q12VA2 ), MFNA_METHJ (Q2FSD2 ), MFNA_METJA (Q60358 ), MFNA_METKA (Q8TV92 ), MFNA_METMA (Q8PXA5 ), MFNA_METST (Q2NHY7 ), MFNA_METTH (O27188 ), MFNA_NATPD (Q3IT46 ), PDXD1_HUMAN (Q6P996 ), PDXD1_MOUSE (Q99K01 ), PDXD1_XENLA (Q6DF78 ), PDXD2_HUMAN (Q6P474 ), SGPL1_HUMAN (O95470 ), SGPL1_MOUSE (Q8R0X7 ), SGPL1_PONAB (Q5R4G0 ), SGPL1_RAT (Q8CHN6 ), SGPL_ARATH (Q9C509 ), SGPL_CAEEL (Q9Y194 ), SGPL_DROME (Q9V7Y2 ), SGPL_YEAST (Q05567 ), TRPDC_CLOS1 (J7SZ64 ), TYDC2_ARATH (Q9M0G4 )» more |
UniProtKB/Swiss-Prot False positive sequences |
10 sequences
ATG1B_ARATH (F4JBP3 ), CCME_EHRCJ (Q3YSH2 ), CCME_EHRCR (Q2GG46 ), CCME_EHRRG (Q5FHG0 ), CCME_EHRRW (Q5HBM4 ), CH101_VIBCH (Q9KNR6 ), HS7C4_DICDI (Q54BD8 ), MMS1_YEAST (Q06211 ), NUOD_SPHAL (Q1GTK0 ), RMT2_YARLI (Q6CBX2 )» more |
PDB [Detailed view] |
18 PDB
1JS3; 1JS6; 1PMM; 1PMO; 1XEY; 2DGK; 2DGL; 2DGM; 3FZ6; 3FZ7; 3FZ8; 3RBF; 3RBL; 3RCH; 4E1O; 4OBU; 4OBV; 6ENZ » more |