We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS00397
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS00397
Direct ScanProsite submission
General information about the entry
| Entry name [info] | RECOMBINASES_1 |
| Accession [info] | PS00397 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-1991 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00334 |
| Associated ProRule [info] | PRU10137 |
Name and characterization of the entry
| Description [info] | Site-specific recombinases active site. |
| Pattern [info] |
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q. |
Numerical results [info]
| Total number of hits | 36 in 36 different sequences |
| Number of true positive hits | 33 in 33 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 3 in 3 different sequences |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 91.67 % |
| Recall (true positives / (true positives + false negatives)) | 80.49 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 5 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
33 sequences
BIN3_STAAU (P20384), BINL_STAAU (P18358), BINR_STAAU (P19241), CIN_BPP1(P10311), CIN_BPP7(P21703), CISA_BACSU (P17867), GIN_BPD10 (Q38199), GIN_BPMU(P03015), HIN_SALAE (Q02869), HIN_SALTY (P03013), PARA4_ECOLX (P22996), PINE_ECOLI (P03014), RES4_ECOLX (P13606), RES_CLOPE (Q93MD2), RES_CLOPF (P07945), STBA_PSEUB (Q52563), TNPT_PSEPU (P30739), TNR0_ECOLX (P05823), TNR1_ECOLI (P03012), TNR2_ECOLX (P04130), TNR3_ECOLX (P0ADI2), TNR3_KLEPN (P0ADI3), TNR4_KLEPN (P21424), TNR5_PSEAI (P06691), TNR6_ENTFC (Q06237), TNR7_ECOLX (P0C1G2), TNR7_ENTFL (P06693), TNR7_PSEPU (P0C1G3), Y4CG_SINFN (P55389), YIM3_BPPH1 (P10427), YL103_MIMIV (Q5UPI1), YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
ISTA_PSEAI (P15025), PINQ_ECOLI (P77170), PINR_ECOL6 (P0ADI1), PINR_ECOLI (P0ADI0), UVP1_ECOLX (P18957), Y4LS_SINFN (P55559), YNEB_BACSU (Q45057), YOKA_BACSU (O32006)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
PINH_ECOLI (P76611) |
| UniProtKB/Swiss-Prot False positive sequences |
3 sequences
CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE (P29786) |
| PDB [Detailed view] |
18 PDB
pdb_00001gdr; pdb_00001gdt; pdb_00001ght; pdb_00001hx7; pdb_00001zr2; pdb_00001zr4; pdb_00002gm4; pdb_00002gm5; pdb_00002r0q; pdb_00002rsl; pdb_00003pkz; pdb_00004m6f; pdb_00005c31; pdb_00005c32; pdb_00005c34; pdb_00005c35; pdb_00005cy1; pdb_00005cy2 » more |