PROSITE logo

PROSITE entry PS00397


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] RECOMBINASES_1
Accession [info] PS00397
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-1991 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00334
Associated ProRule [info] PRU10137

Name and characterization of the entry

Description [info] Site-specific recombinases active site.
Pattern [info] 
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 91.67 %
Recall (true positives / (true positives + false negatives)) 80.49 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 33 sequences 

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 

CIN_BPP1(P10311), CIN_BPP7(P21703), CISA_BACSU  (P17867), 
GIN_BPD10   (Q38199), GIN_BPMU(P03015), HIN_SALAE   (Q02869), 
HIN_SALTY   (P03013), PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), 
RES4_ECOLX  (P13606), RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), 
STBA_PSEUB  (Q52563), TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), 
TNR1_ECOLI  (P03012), TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), 
TNR3_KLEPN  (P0ADI3), TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), 
TNR6_ENTFC  (Q06237), TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), 
TNR7_PSEPU  (P0C1G3), Y4CG_SINFN  (P55389), YIM3_BPPH1  (P10427), 
YL103_MIMIV (Q5UPI1), YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

ISTA_PSEAI  (P15025), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 

PINR_ECOLI  (P0ADI0), UVP1_ECOLX  (P18957), Y4LS_SINFN  (P55559), 
YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

PINH_ECOLI  (P76611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			3 sequences
			


			
CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE  (P29786)


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ; 4M6F; 
			
				5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2
			
			

			» more