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PROSITE entry PS00397


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General information about the entry

Entry name [info] RECOMBINASES_1
Accession [info] PS00397
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-1991 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00334
Associated ProRule [info] PRU10137

Name and characterization of the entry

Description [info] Site-specific recombinases active site.
Pattern [info] 
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 91.67 %
Recall (true positives / (true positives + false negatives)) 80.49 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 33 sequences 

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 

CIN_BPP1(P10311), CIN_BPP7(P21703), CISA_BACSU  (P17867), 
GIN_BPD10   (Q38199), GIN_BPMU(P03015), HIN_SALAE   (Q02869), 
HIN_SALTY   (P03013), PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), 
RES4_ECOLX  (P13606), RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), 
STBA_PSEUB  (Q52563), TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), 
TNR1_ECOLI  (P03012), TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), 
TNR3_KLEPN  (P0ADI3), TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), 
TNR6_ENTFC  (Q06237), TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), 
TNR7_PSEPU  (P0C1G3), Y4CG_SINFN  (P55389), YIM3_BPPH1  (P10427), 
YL103_MIMIV (Q5UPI1), YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

ISTA_PSEAI  (P15025), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 

PINR_ECOLI  (P0ADI0), UVP1_ECOLX  (P18957), Y4LS_SINFN  (P55559), 
YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

PINH_ECOLI  (P76611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			3 sequences
			


			
CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE  (P29786)


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ; 4M6F; 
			
				5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2
			
			

			» more