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Entry: PS00397 |
Entry name [info] | RECOMBINASES_1 |
Accession [info] | PS00397 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-DEC-1991 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00334 |
Associated ProRule [info] | PRU10137 |
Description [info] | Site-specific recombinases active site. |
Pattern [info] |
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q. |
Total number of hits | 36 in 36 different sequences |
Number of true positive hits | 33 in 33 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 3 in 3 different sequences |
Number of false negative sequences | 8 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 91.67 % |
Recall (true positives / (true positives + false negatives)) | 80.49 % |
Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Site [info] | active_site at position 5 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
33 sequences
BIN3_STAAU (P20384 ), BINL_STAAU (P18358 ), BINR_STAAU (P19241 ), CIN_BPP1 (P10311 ), CIN_BPP7 (P21703 ), CISA_BACSU (P17867 ), GIN_BPD10 (Q38199 ), GIN_BPMU (P03015 ), HIN_SALAE (Q02869 ), HIN_SALTY (P03013 ), PARA4_ECOLX (P22996 ), PINE_ECOLI (P03014 ), RES4_ECOLX (P13606 ), RES_CLOPE (Q93MD2 ), RES_CLOPF (P07945 ), STBA_PSEUB (Q52563 ), TNPT_PSEPU (P30739 ), TNR0_ECOLX (P05823 ), TNR1_ECOLI (P03012 ), TNR2_ECOLX (P04130 ), TNR3_ECOLX (P0ADI2 ), TNR3_KLEPN (P0ADI3 ), TNR4_KLEPN (P21424 ), TNR5_PSEAI (P06691 ), TNR6_ENTFC (Q06237 ), TNR7_ECOLX (P0C1G2 ), TNR7_ENTFL (P06693 ), TNR7_PSEPU (P0C1G3 ), Y4CG_SINFN (P55389 ), YIM3_BPPH1 (P10427 ), YL103_MIMIV (Q5UPI1 ), YR080_MIMIV (Q5UPF4 ), YR771_MIMIV (Q5UPQ7 )» more
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UniProtKB/Swiss-Prot False negative sequences |
8 sequences
ISTA_PSEAI (P15025 ), PINQ_ECOLI (P77170 ), PINR_ECOL6 (P0ADI1 ), PINR_ECOLI (P0ADI0 ), UVP1_ECOLX (P18957 ), Y4LS_SINFN (P55559 ), YNEB_BACSU (Q45057 ), YOKA_BACSU (O32006 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
PINH_ECOLI (P76611 ) |
UniProtKB/Swiss-Prot False positive sequences |
3 sequences
CCKNA_XENLA (P50144 ), CCKNB_XENLA (P50145 ), TRY3_AEDAE (P29786 ) |
PDB [Detailed view] |
18 PDB
1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ; 4M6F; 5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2 » more |