PROSITE entry PS00398
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General information about the entry
Entry name [info] | RECOMBINASES_2 |
Accession [info] | PS00398 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00334 |
Name and characterization of the entry
Description [info] | Site-specific recombinases signature 2. |
Pattern [info] |
G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA]. |
Numerical results [info]
Total number of hits | 37 in 37 different sequences |
Number of true positive hits | 32 in 32 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 5 in 5 different sequences |
Number of false negative sequences | 8 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 86.49 % |
Recall (true positives / (true positives + false negatives)) | 80.00 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
32 sequences
BIN3_STAAU (P20384), BINL_STAAU (P18358), BINR_STAAU (P19241), CIN_BPP1(P10311), CIN_BPP7(P21703), GIN_BPD10 (Q38199), GIN_BPMU(P03015), HIN_SALAE (Q02869), HIN_SALTY (P03013), PARA4_ECOLX (P22996), PINE_ECOLI (P03014), PINQ_ECOLI (P77170), PINR_ECOL6 (P0ADI1), PINR_ECOLI (P0ADI0), RES4_ECOLX (P13606), RES_CLOPE (Q93MD2), RES_CLOPF (P07945), STBA_PSEUB (Q52563), TNPT_PSEPU (P30739), TNR0_ECOLX (P05823), TNR1_ECOLI (P03012), TNR2_ECOLX (P04130), TNR3_ECOLX (P0ADI2), TNR3_KLEPN (P0ADI3), TNR4_KLEPN (P21424), TNR5_PSEAI (P06691), TNR7_ECOLX (P0C1G2), TNR7_ENTFL (P06693), TNR7_PSEPU (P0C1G3), UVP1_ECOLX (P18957), Y4CG_SINFN (P55389), Y4LS_SINFN (P55559)» more
|
UniProtKB/Swiss-Prot False negative sequences |
8 sequences
CISA_BACSU (P17867), ISTA_PSEAI (P15025), TNR6_ENTFC (Q06237), YL103_MIMIV (Q5UPI1), YNEB_BACSU (Q45057), YOKA_BACSU (O32006), YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
PINH_ECOLI (P76611) |
UniProtKB/Swiss-Prot False positive sequences |
5 sequences
ABCE_ASPFU (Q4WA92), FOLD_ALCBS (Q0VQ92), KMT2D_HUMAN (O14686), NTE1_CANGA (Q6FKJ1), SP4A_CLOD6 (Q182W3)» more |
PDB [Detailed view] |
18 PDB
1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3; 4M6F; 5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2 » more |