PROSITE logo

PROSITE entry PS00398


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] RECOMBINASES_2
Accession [info] PS00398
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00334

Name and characterization of the entry

Description [info] Site-specific recombinases signature 2.
Pattern [info] 
G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 37 in 37 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 86.49 %
Recall (true positives / (true positives + false negatives)) 80.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 32 sequences 

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 

CIN_BPP1(P10311), CIN_BPP7(P21703), GIN_BPD10   (Q38199), 
GIN_BPMU(P03015), HIN_SALAE   (Q02869), HIN_SALTY   (P03013), 
PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), PINQ_ECOLI  (P77170), 
PINR_ECOL6  (P0ADI1), PINR_ECOLI  (P0ADI0), RES4_ECOLX  (P13606), 
RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), 
TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), 
TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), 
TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), TNR7_ECOLX  (P0C1G2), 
TNR7_ENTFL  (P06693), TNR7_PSEPU  (P0C1G3), UVP1_ECOLX  (P18957), 
Y4CG_SINFN  (P55389), Y4LS_SINFN  (P55559)
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

CISA_BACSU  (P17867), ISTA_PSEAI  (P15025), TNR6_ENTFC  (Q06237), 

YL103_MIMIV (Q5UPI1), YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006), 
YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

PINH_ECOLI  (P76611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			5 sequences
			


			
ABCE_ASPFU  (Q4WA92), FOLD_ALCBS  (Q0VQ92), KMT2D_HUMAN (O14686), 

			
NTE1_CANGA  (Q6FKJ1), SP4A_CLOD6  (Q182W3)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3; 4M6F; 
			
				5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2
			
			

			» more