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PROSITE entry PS00398


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General information about the entry

Entry name [info] RECOMBINASES_2
Accession [info] PS00398
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00334

Name and characterization of the entry

Description [info] Site-specific recombinases signature 2.
Pattern [info] 
G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.


Total number of hits 37 in 37 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 86.49 %
Recall (true positives / (true positives + false negatives)) 80.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 32 sequences 

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 

CIN_BPP1(P10311), CIN_BPP7(P21703), GIN_BPD10   (Q38199), 
GIN_BPMU(P03015), HIN_SALAE   (Q02869), HIN_SALTY   (P03013), 
PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), PINQ_ECOLI  (P77170), 
PINR_ECOL6  (P0ADI1), PINR_ECOLI  (P0ADI0), RES4_ECOLX  (P13606), 
RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), 
TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), 
TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), 
TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), TNR7_ECOLX  (P0C1G2), 
TNR7_ENTFL  (P06693), TNR7_PSEPU  (P0C1G3), UVP1_ECOLX  (P18957), 
Y4CG_SINFN  (P55389), Y4LS_SINFN  (P55559)
» more

UniProtKB/Swiss-Prot
False negative sequences		 8 sequences 

CISA_BACSU  (P17867), ISTA_PSEAI  (P15025), TNR6_ENTFC  (Q06237), 

YL103_MIMIV (Q5UPI1), YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006), 
YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

PINH_ECOLI  (P76611)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			5 sequences
			


			
ABCE_ASPFU  (Q4WA92), FOLD_ALCBS  (Q0VQ92), KMT2D_HUMAN (O14686), 

			
NTE1_CANGA  (Q6FKJ1), SP4A_CLOD6  (Q182W3)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3; 4M6F; 
			
				5C31; 5C32; 5C34; 5C35; 5CY1; 5CY2
			
			

			» more