PROSITE entry PS00420
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General information about the entry
| Entry name [info] | SRCR_1 |
| Accession [info] | PS00420 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00348 |
Name and characterization of the entry
| Description [info] | SRCR domain signature. |
| Pattern [info] |
[GNRVM]-x(5)-[GLKA]-x(2)-[EQ]-x(6)-[WPS]-[GLKH]-x(2)-C-x(3)-[FYW]-x(8)- [CM]-x(3)-G. |
Numerical results [info]
| Total number of hits | 183 in 82 different sequences |
| Number of true positive hits | 183 in 82 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 21 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 89.71 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 13 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
82 sequences
BARK_DROME (M9NDE3), C163A_BOVIN (P85521), C163A_CANLF (Q2VLG6), C163A_CHLAE (Q2VLG4), C163A_HUMAN (Q86VB7), C163A_MOUSE (Q2VLH6), C163A_PIG (Q2VL90), C163B_HUMAN (Q9NR16), CD5L_HUMAN (O43866), CD5L_MOUSE (Q9QWK4), CD6_HUMAN (P30203), CORIN_HUMAN (Q9Y5Q5), CORIN_MOUSE (Q9Z319), CORIN_RAT (Q80YN4), DMBT1_HUMAN (Q9UGM3), DMBT1_MOUSE (Q60997), DMBT1_PIG (Q4A3R3), DMBT1_RABIT (Q95218), DMBT1_RAT (Q8CIZ5), DMBTL_MOUSE (Q8BZE1), ENTK_BOVIN (P98072), ENTK_MOUSE (P97435), ENTK_PIG(P98074), HIPL1_HUMAN (Q96JK4), HIPL1_MOUSE (Q14DK5), L3BPA_DANRE (Q24JV9), L3BPB_DANRE (Q6NY73), LG3BP_BOVIN (A7E3W2), LG3BP_HUMAN (Q08380), LG3BP_MESAU (P70117), LG3BP_MOUSE (Q07797), LG3BP_PONAB (Q5RDA4), LG3BP_RAT (O70513), LOL2A_DANRE (F1QQC3), LOL2B_DANRE (A1L1V4), LOX3A_DANRE (F1RD85), LOX3B_DANRE (B8A4W9), LOXL2_BOVIN (A6H737), LOXL2_CHICK (E1C3U7), LOXL2_HUMAN (Q9Y4K0), LOXL2_MOUSE (P58022), LOXL2_PONAB (Q5RFQ6), LOXL2_RAT (B5DF27), LOXL2_XENLA (Q08B63), LOXL2_XENTR (B4F6N6), LOXL3_HUMAN (P58215), LOXL3_MOUSE (Q9Z175), LOXL4_BOVIN (Q8MJ24), LOXL4_HUMAN (Q96JB6), LOXL4_MOUSE (Q924C6), MARCO_HUMAN (Q9UEW3), MARCO_MESAU (Q9WUB9), MARCO_MOUSE (Q60754), MSRE_BOVIN (P21758), MSRE_HUMAN (P21757), MSRE_MOUSE (P30204), MSRE_RABIT (Q05585), NETR_GORGO (Q5G270), NETR_HUMAN (P56730), NETR_MACMU (Q5G267), NETR_MOUSE (O08762), NETR_NOMLE (Q5G268), NETR_PANTR (Q5G271), NETR_PONPY (Q5G269), NETR_RAT(G3V801), NETR_SAGLB (Q5G265), NETR_TRAPH (Q5G266), SCAR5_BOVIN (A5PJQ2), SCAR5_DANRE (Q5RFW0), SCAR5_HUMAN (Q6ZMJ2), SCAR5_MOUSE (Q8K299), SPER_STRPU (P16264), SRB4D_HUMAN (Q8WTU2), SRB4D_MOUSE (A1L0T3), SRCR1_PATPE (F7J220), SRCRL_HUMAN (A1L4H1), SRCRL_MOUSE (Q8BV57), SRCRM_HUMAN (Q4G0T1), TMPS3_HUMAN (P57727), TMPS5_HUMAN (Q9H3S3), TMPS5_MOUSE (Q9ER04), WC11_BOVIN (P30205)» more
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| UniProtKB/Swiss-Prot False negative sequences |
21 sequences
CD5_BOVIN (P19238), CD5_HUMAN (P06127), CD5_MOUSE (P13379), CD5_RAT (P51882), CD6_MOUSE (Q61003), CFAI_HUMAN (P05156), CFAI_MOUSE (Q61129), CFAI_PONAB (Q5R5A4), CFAI_RAT(Q9WUW3), ENTK_HUMAN (P98073), HEPS_HUMAN (P05981), HEPS_MOUSE (O35453), HEPS_PONAB (Q5R5E8), HEPS_RAT(Q05511), SVH1_CAEEL (Q17800), TMPS2_HUMAN (O15393), TMPS2_MOUSE (Q9JIQ8), TMPS4_HUMAN (Q9NRS4), TMPS4_MOUSE (Q8VCA5), TMPSD_HUMAN (Q9BYE2), TMPSD_MOUSE (Q5U405)» more |
| PDB [Detailed view] |
16 PDB
1BY2; 2OY3; 2OYA; 5A2E; 5ZE3; 6H8M; 6J02; 6SA4; 6SA5; 6SAN; 7BZZ; 7C00; 7DPX; 8H7J; 8J8D; 8J8T » more |